ISLR2 Gene
protein-coding GIFtS : 48
GCID: GC15 P074421
immunoglobulin superfamily containing leucine-rich repeat...
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Aliasesfor ISLR2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Immunoglobulin Superfamily Containing Leucine-Rich Repeat 2 1 2 KIAA14651 3 Leucine-Rich Repeat Domain And Immunoglobulin Domain-Containing Axon ExtensionProtein2 3 LINX2 3 Immunoglobulin Superfamily Containing Leucine-Rich Repeat Protein 22
Export aliases for ISLR2 gene to outside databases Previous GC identifers: GC15P072209 GC15P051215
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Summariesfor ISLR2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: ISLR2_HUMAN, Q6UXK2 Function : Required for axon extension during neural development (By similarity)
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Genomic Viewsfor ISLR2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000015.9 NC_018926.1 NT_010194.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ISLR2 gene promoter: FOXI1 HFH-3 AP-4 Other transcription factors Search SABiosciences Chromatin IP Primers for ISLR2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ISLR2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 15q24.1 Ensembl cytogenetic band: 15q24.1 HGNC cytogenetic band: 15q24.1 ISLR2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 15 GeneLoc Exon Structure
GeneLoc location for GC15P074421: view genomic region
(about GC identifiers )
Start:
74,392,652 bp from pter
End:
74,430,881 bp from pter
Size:
38,230 bases
Orientation:
plus strand
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Proteinsfor ISLR2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: ISLR2_HUMAN, Q6UXK2 (See
protein sequence )Recommended Name: Immunoglobulin superfamily containing leucine-rich repeat protein 2 precursor Size : 745 amino acids; 78990 Da
Subunit : Homomultimer. Interacts with NTRK1/TrkA (By similarity)
Subcellular location : Cell membrane; Single-pass membrane protein (By similarity)
Sequence caution : Sequence=BAA95989.2; Type=Erroneous initiation;
Secondary accessions : A8K352 Q9P263Explore the universe of human proteins at neXtProt for ISLR2: NX_Q6UXK2 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q6UXK2 ISLR2 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (4 alternative transcripts):
NP_001123608.1 NP_001123609.1 NP_001123610.1 NP_065902.1 ENSEMBL proteins: ENSP00000454287 ENSP00000355402 ENSP00000455531 ENSP00000454859 ENSP00000455076 ENSP00000411834 ENSP00000454259 ENSP00000458080 ENSP00000403244 ENSP00000411443 ENSP00000408872 Human Recombinant Protein Products: Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view) : About this table
ISLR2 for ontologies About GeneDecksing ISLR2 Antibody Products: Assay Products for ISLR2:
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Protein
Domains / Familiesfor ISLR2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ISLR2 for domains About GeneDecksing 5/7 InterPro domains/families (see all 7 ):
Graphical View of Domain Structure for InterPro Entry Q6UXK2 ProtoNet protein and cluster: Q6UXK2
3 Blocks protein families : IPB000372 Cysteine-rich flanking region IPB000483 Cysteine-rich flanking region IPB013098 Immunoglobulin I-set UniProtKB/Swiss-Prot: ISLR2_HUMAN, Q6UXK2 Similarity : Contains 1 Ig-like (immunoglobulin-like) domainSimilarity : Contains 5 LRR (leucine-rich) repeatsSimilarity : Contains 1 LRRCT domainSimilarity : Contains 1 LRRNT domain
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Functionfor ISLR2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: ISLR2_HUMAN, Q6UXK2 Function : Required for axon extension during neural development (By similarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ISLR2 (see all 12 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ISLR2 (see all 4 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 4 ): ISLR2 (NM_001130136 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ISLR2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ISLR2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ISLR2
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005515 protein binding
-- --
ISLR2 for ontologies About GeneDecksing Animal Models: 3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Islr2) :
ISLR2 for phenotypes About GeneDecksing
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Pathways & Interactionsfor ISLR2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ISLR2 Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0045773 positive regulation of axon extension
ISS --
ISLR2 for ontologies About GeneDecksing
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Drugs & Compoundsfor ISLR2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for ISLR2 Search CenterWatch for drugs/clinical trials and news about ISLR2
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Transcriptsfor ISLR2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for ISLR2 gene (4 alternative transcripts): NM_001130136.1 NM_001130137.1 NM_001130138.1 NM_020851.2 Unigene Cluster for ISLR2:
Immunoglobulin superfamily containing leucine-rich repeat 2 Hs.254775 [show with all ESTs ] Unigene Representative Sequence: BC152429 13 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000561975 ENST00000569886 ENST00000361742 (uc002axd.3 uc002axe.3 uc010bjf.3 )ENST00000565068 ENST00000565159 ENST00000567206 ENST00000561740 ENST00000453268 ENST00000565332 ENST00000565540 ENST00000445793 ENST00000435464 (uc010bjg.3 )ENST00000419208 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ISLR2 (see all 12 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ISLR2 (see all 4 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 4 ): ISLR2 (NM_001130136 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ISLR2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ISLR2
Additional cDNA sequence: AB040898.2 AK092297.1 AK092302.1 AK290467.1 AK309388.1 AY358316.1 BC028042.1 BC114551.1 BC152429.1
7 DOTS entries : DT.100742761 DT.95111309
DT.100016851 DT.121079860 DT.100836032 DT.121079867 DT.121079864 24/32 AceView cDNA sequences (see all 32 ):
AX747460 BX442047 AX747465 BI917487 AK092302 BC028042 AB040898 BI914695 NM_020851 AK092297 AY358316 AW007241 BM839809 BM841956 BX095860 BX441838 BX452285 BM727467 BM011358 AK096602 AL134441 BX461894 R19055 BU852293 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for ISLR2 (see all 6 ) About this scheme ExUns: 1 ^ 2a · 2b · 2c · 2d · 2e ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c · 6d · 6e SP1 :   -   -   -   -   -   -         -             SP2 :         -   -   -         -             SP3 :           -   -         -             SP4 :             -                     SP5 :                     -            
ECgene alternative splicing isoforms for ISLR2
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Expression for ISLR2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section ISLR2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CAAGACTCCA
About this image ISLR2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See ISLR2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for ISLR2 SOURCE GeneReport for Unigene cluster: Hs.254775 SABiosciences Custom PCR Arrays for ISLR2 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ISLR2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat ISLR2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ISLR2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ISLR2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ISLR2
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Orthologsfor ISLR2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for ISLR2 gene from 3/11 species (see all 11 ) About this table
ENSEMBL Gene Tree for ISLR2 (if available)TreeFam Gene Tree for ISLR2 (if available)
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Paralogsfor ISLR2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for ISLR2 gene LRRC26 2 SLIT2 2 ISLR 2 LRRC17 2 LRIT2 2 SLIT1 2 LRRC52 2 LRTM1 2 LRIT1 2 LRTM2 2 SLIT3 2 LRIT3 2 LRRC55 2 LRRC24 2 LRRC38 2 8 SIMAP similar genes for ISLR2 using alignment to 5 protein entries: ISLR2_HUMAN (see all proteins ):ISLR LRIG3 PODNL1 LRRC4 SLIT2 TLR10 LINGO3 LINGO1
ISLR2 for paralogs About GeneDecksing
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Genomic Variantsfor ISLR2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 15 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for ISLR2 (74392652 - 74430881 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for ISLR2 1 CNV : 3968 1 Inversion : 37170
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ISLR2
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Disorders
/ Diseasesfor ISLR2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ISLR2 for disorders About GeneDecksing
OMIM gene information: 614179
OMIM disorders : --1 disease for ISLR2 : About MalaCards bardet-biedl syndrome Export disorders for ISLR2 gene to outside databases
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Publicationsfor ISLR2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for ISLR2 gene integrated from 9 sources : (articles sorted by number of sources associating them with ISLR2) Utopia : connect your pdf to the dynamic world of online information
The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 , 3 Clark H.F.... Gray A.M. (2003) Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10819331) 1 , 2 , 3 Nagase T.... Ohara O. (2000) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PubMed id 12168954) 2 Nakajima D.... Nagase T. (2002)
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External Searches for ISLR2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing ISLR2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing ISLR2 gene
(According to HUGE )
About This Section
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Specialized Databases showing ISLR2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for ISLR2 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for ISLR2 gene: Search GeneIP for patents involving ISLR2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor ISLR2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for ISLR2 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for ISLR2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ISLR2 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for ISLR2 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ISLR2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ISLR2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for ISLR2 OriGene Custom Protein Services for ISLR2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ISLR2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ISLR2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ISLR2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat ISLR2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ISLR2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ISLR2
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ISLR2 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ISLR2
ThermoFisher Antibody for ISLR2
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ISLR2
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Aliases for ISLR2
Databases for ISLR2
Disorders / Diseases for ISLR2
Domains / Families for ISLR2
Drugs / Compounds for ISLR2
Expression for ISLR2
Function for ISLR2
Genomic Views for ISLR2
Intellectual Property for ISLR2
Orthologs for ISLR2
Paralogs for ISLR2
Pathways / Interactions for ISLR2
Products for ISLR2
Proteins for ISLR2
Publications for ISLR2
Search Box for ISLR2
Summaries for ISLR2
Transcripts for ISLR2
Variants for ISLR2
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