ISL2 Gene
protein-coding GIFtS : 47
GCID: GC15 P076629
ISL LIM homeobox 2 (Previous names: ISL2 transcription factor, LIM/homeodomain, (islet-2) )
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Aliasesfor ISL2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases ISL LIM Homeobox 2 1 2 ISL2 Transcription Factor, LIM/Homeodomain, (Islet-2)1 2 FLJ101601 Insulin Gene Enhancer Protein ISL-22 Islet-23 Islet-23
Export aliases for ISL2 gene to outside databases Previous GC identifers: GC15P072517 GC15P069719 GC15P074205 GC15P074344 GC15P074416 GC15P053386
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Summariesfor ISL2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: ISL2_HUMAN, Q96A47 Function : Transcriptional factor that defines subclasses of motoneurons that segregate into columns in the spinal cordand select distinct axon pathways (By similarity)
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Genomic Viewsfor ISL2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000015.9 NC_018926.1 NT_010194.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ISL2 gene promoter: AML1a Pax-5 Pax-2 Pax-2a NF-kappaB N-Myc POU2F1 POU2F1a Cart-1 NF-kappaB1 Other transcription factors Search SABiosciences Chromatin IP Primers for ISL2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ISL2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 15q23 Ensembl cytogenetic band: 15q24.3 HGNC cytogenetic band: 15q24.3 ISL2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 15 GeneLoc Exon Structure
GeneLoc location for GC15P076629: view genomic region
(about GC identifiers )
Start:
76,629,065 bp from pter
End:
76,634,817 bp from pter
Size:
5,753 bases
Orientation:
plus strand
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Proteinsfor ISL2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: ISL2_HUMAN, Q96A47 (See
protein sequence )Recommended Name: Insulin gene enhancer protein ISL-2 Size : 359 amino acids; 39768 Da
Subcellular location : Nucleus (By similarity)
Secondary accessions : B3KM37Explore the universe of human proteins at neXtProt for ISL2: NX_Q96A47 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q96A47 ISL2 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_665804.1 ENSEMBL proteins: ENSP00000290759 ENSP00000453837 ENSP00000452985 Human Recombinant Protein Products for ISL2: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
ISL2 for ontologies About GeneDecksing ISL2 Antibody Products: Assay Products for ISL2:
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Protein
Domains / Familiesfor ISL2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ISL2 for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q96A47 ProtoNet protein and cluster: Q96A47
1 Blocks protein family : IPB001781 Zn-binding protein UniProtKB/Swiss-Prot: ISL2_HUMAN, Q96A47 Similarity : Contains 1 homeobox DNA-binding domainSimilarity : Contains 2 LIM zinc-binding domains
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Functionfor ISL2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: ISL2_HUMAN, Q96A47 Function : Transcriptional factor that defines subclasses of motoneurons that segregate into columns in the spinal cordand select distinct axon pathways (By similarity)
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view) : About this table
ISL2 for ontologies About GeneDecksing Phenotypes: 7 MGI mutant phenotypes (inferred from 6 alleles ) (MGI details for Isl2) :
ISL2 for phenotypes About GeneDecksing Animal Models: Mouse knock-out Isl2 tm2Slp for ISL2Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ISL2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ISL2OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: ISL2 (NM_145805 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ISL2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ISL2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ISL2
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Pathways & Interactionsfor ISL2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ISL2 STRING Interaction
Network Preview (showing 3 interactants - click image to see more details)5/8 Interacting proteins for ISL2 (Q96A47 3 ENSP00000290759 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 8 )About this table Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0021520 spinal cord motor neuron cell fate specification
IEA -- GO:0021524 visceral motor neuron differentiation
IEA -- GO:0031290 retinal ganglion cell axon guidance
IEA -- GO:0045665 negative regulation of neuron differentiation
IEA -- GO:0048663 neuron fate commitment
-- --
ISL2 for ontologies About GeneDecksing
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Drugs & Compoundsfor ISL2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for ISL2 Search CenterWatch for drugs/clinical trials and news about ISL2
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Transcriptsfor ISL2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for ISL2 gene: NM_145805.1 Unigene Cluster for ISL2:
ISL LIM homeobox 2 Hs.444677 [show with all ESTs ] Unigene Representative Sequence: AB593133 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000290759 (uc002bbw.1 uc021sqw.1 ) ENST00000558656 ENST00000558437 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ISL2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ISL2OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: ISL2 (NM_145805 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ISL2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ISL2
Additional cDNA sequence: AB593133.1 AK001022.1 BC011967.1 BC012136.1
3 DOTS entries : DT.305214 DT.75175862
DT.65287319 24 AceView cDNA sequences :
NM_145805 AK001022 BC011967 CR610026 AA459822 BQ881714 BC012136 BE783453 BX327471 BU849219 BU553385 AU118412 BM827241 BU845300 BE778146 AI936027 AL559452 AL559453 AA776817 AA459702 BX280469 BG472783 AU144983 BU553899 GeneLoc Exon Structure
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Expression for ISL2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section ISL2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ATTGCTGGGAAbout this image ISL2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See ISL2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for ISL2 SOURCE GeneReport for Unigene cluster: Hs.444677 SABiosciences Expression via Pathway-Focused PCR Array including ISL2 : Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ISL2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat ISL2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ISL2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ISL2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ISL2
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Orthologsfor ISL2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for ISL2 gene from 4/16 species (see all 16 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
F1N959_CHICK6
Uncharacterized protein
65(a)
1 ↔ 1
Z(14559796-14572244)
zebrafish (Danio rerio)
Actinopterygii
isl22
islet2
81.06(n)
 
30157 D38453.1
fruit fly (Drosophila melanogaster)
Insecta
tup3
terminal region determination specific RNA polymerase more
65(a)
 
2 37B1 --
worm (Caenorhabditis elegans)
Secernentea
lim-73
homeobox protein
36(a)
 
I(5724813-5733493) --
ENSEMBL Gene Tree for ISL2 (if available)TreeFam Gene Tree for ISL2 (if available)
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Paralogsfor ISL2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for ISL2 gene LMO2 2 ISL1 2 LHX2 2 LHX9 2 LMX1B 2 LMO1 2 LHX5 2 LMO4 2 LHX6 2 LHX1 2 LMX1A 2 LMO3 2 LHX4 2 LHX3 2 LHX8 2 18/23 SIMAP similar genes for ISL2 using alignment to 4 protein entries: ISL2_HUMAN (see all proteins )
(see all similar genes ):ISL1 LHx4 LMO1 DKFZp686P2249 LMO3 LHX4 LMO2 LHX2 LHX9 LHX8 LHX1 LHX6 LMO4 LMX1A LMX1B ABLIM1 LDB3 ABLIM2
ISL2 for paralogs About GeneDecksing
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Genomic Variantsfor ISL2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ISL2
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Disorders
/ Diseasesfor ISL2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ISL2 for disorders About GeneDecksing
OMIM gene information: 609481
OMIM disorders : --6 diseases for ISL2 : About MalaCards aphasia constipation keratoconus pharyngitis neuronitis retinitis 1 disease from the University of Copenhagen DISEASES database for ISL2 :Cortical blindness Export disorders for ISL2 gene to outside databases
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Publicationsfor ISL2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for ISL2 gene, integrated from 9 sources (see all 12 ): (articles sorted by number of sources associating them with ISL2) Utopia : connect your pdf to the dynamic world of online information
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PubMed id 21697133) 1 Oshikawa M.... Kato S. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011) Sperry versus Hebb: topographic mapping in Isl2/EphA3 mutant mice. (PubMed id 21190559) 1 Tsigankov D. and Koulakov A.A. (2010) Dynamics of cullin-RING ubiquitin ligase network revea led by systematic quantitative proteomics. (PubMed id 21145461) 1 Bennett E.J....Harper J.W. (2010) Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332) 2 Mayya V.... Han D.K. (2009) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 2 Dephoure N.... Gygi S.P. (2008) Cloning and expression of a novel human gene, Isl-2, encoded a LIM-homeodomain protein. (PubMed id 17091338) 1 Li Y....Liu M. (2007) Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935) 1 Beausoleil S.A....Gygi S.P. (2004)
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External Searches for ISL2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing ISL2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing ISL2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing ISL2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for ISL2 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for ISL2 gene: Search GeneIP for patents involving ISL2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor ISL2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for ISL2 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for ISL2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ISL2 OriGene Protein Over-expression Lysate for ISL2 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for ISL2 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ISL2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ISL2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for ISL2 OriGene Custom Protein Services for ISL2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ISL2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ISL2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ISL2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat ISL2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ISL2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ISL2
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ISL2 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ISL2
Search ThermoFisher Antibodies for ISL2
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ISL2
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Aliases for ISL2
Databases for ISL2
Disorders / Diseases for ISL2
Domains / Families for ISL2
Drugs / Compounds for ISL2
Expression for ISL2
Function for ISL2
Genomic Views for ISL2
Intellectual Property for ISL2
Orthologs for ISL2
Paralogs for ISL2
Pathways / Interactions for ISL2
Products for ISL2
Proteins for ISL2
Publications for ISL2
Search Box for ISL2
Summaries for ISL2
Transcripts for ISL2
Variants for ISL2
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