IRX6 Gene
protein-coding GIFtS : 46
GCID: GC16 P055357
iroquois homeobox 6 (Previous names: iroquois homeobox protein 7, iroquois homeobox protein... ) (Previous symbol: IRX7 )
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Aliasesfor IRX6 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Iroquois Homeobox 6 1 2 Iroquois Homeobox Protein 71 2 IRX71 2 3 5 Homeodomain Protein IRXB32 3 Iroquois Homeobox Protein 61 2 3 IRXB32 3 IRX-31 2 Iroquois-Class Homeodomain Protein IRX-62
Export aliases for IRX6 gene to outside databases Previous GC identifers: GC16M055413 GC16P055096 GC16P055137 GC16P055136 GC16P053915 GC16P041244
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Summariesfor IRX6 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Gene Wiki entry for IRX6
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Genomic Viewsfor IRX6 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000016.9 NC_018927.1 NT_010498.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the IRX6 gene promoter: Bach1 HFH-3 POU3F1 AP-2gamma FOXL1 FOXI1 SRY Nkx6-1 ATF6 Other transcription factors Search SABiosciences Chromatin IP Primers for IRX6 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat IRX6
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 16q12.2 Ensembl cytogenetic band: 16q12.2 HGNC cytogenetic band: 16q12.2 IRX6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16P055357: view genomic region
(about GC identifiers )
Start:
55,357,672 bp from pter
End:
55,364,672 bp from pter
Size:
7,001 bases
Orientation:
plus strand
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Proteinsfor IRX6 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: IRX6_HUMAN, P78412 (See
protein sequence )Recommended Name: Iroquois-class homeodomain protein IRX-6 Size : 446 amino acids; 48240 Da
Subcellular location : Nucleus (Probable)
Secondary accessions : B2RN06 Q7Z2K0Explore the universe of human proteins at neXtProt for IRX6: NX_P78412 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P78412 IRX6 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_077311.2 ENSEMBL proteins: ENSP00000290552 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
IRX6 for ontologies About GeneDecksing IRX6 Antibody Products: Assay Products for IRX6:
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Protein
Domains / Familiesfor IRX6 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
IRX6 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P78412 ProtoNet protein and cluster: P78412
1 Blocks protein family : IPB003893 Iroquois-class homeodomain protein UniProtKB/Swiss-Prot: IRX6_HUMAN, P78412 Similarity : Belongs to the TALE/IRO homeobox familySimilarity : Contains 1 homeobox DNA-binding domain
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Functionfor IRX6 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for IRX6 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for IRX6OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: IRX6 (NM_024335 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for IRX6 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat IRX6
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IRX6
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003700 sequence-specific DNA binding transcription factor activity
IEA -- GO:0043565 sequence-specific DNA binding
IEA --
IRX6 for ontologies About GeneDecksing Animal Models: 2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Irx6) :
IRX6 for phenotypes About GeneDecksing
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Pathways & Interactionsfor IRX6 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for IRX6
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Drugs & Compoundsfor IRX6 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for IRX6 Search CenterWatch for drugs/clinical trials and news about IRX6
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Transcriptsfor IRX6 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for IRX6 gene: NM_024335.2 Unigene Cluster for IRX6:
Iroquois homeobox 6 Hs.369907 [show with all ESTs ] Unigene Representative Sequence: AK125053 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000290552 (uc002ehx.3 uc002ehy.3 ) ENST00000558315 (uc010ccb.1 )Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for IRX6 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for IRX6OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: IRX6 (NM_024335 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for IRX6 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat IRX6
Additional cDNA sequence: AK125053.1 AK309149.1 AY335937.1 BC136573.1 BC136576.1
1 DOTS entry : DT.101980181
22 AceView cDNA sequences :
BM929891 AI792465 AY335937 NM_024335 AI185773 AI820799 AI792142 BM724662 AK125053 BM667197 AI263887 BM698030 AI821795 BG739786 AW449920 BX114798 BU741332 AW149016 AI191445 AJ707304 U90305 BF204113 GeneLoc Exon Structure
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Expression for IRX6 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section IRX6 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CTTGGAGAAA
About this image IRX6 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See IRX6 Protein Expression from SPIRE MOPED and PaxDB SOURCE GeneReport for Unigene cluster: Hs.369907 SABiosciences Custom PCR Arrays for IRX6 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for IRX6Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat IRX6 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat IRX6 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat IRX6 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IRX6
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Orthologsfor IRX6 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for IRX6 gene from 4/19 species (see all 19 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
F1NHU5_CHICK6
Uncharacterized protein
96(a)
possible ortholog
11(3852180-3852389)
lizard (Anolis carolinensis)
Reptilia
IRX66
--
89(a)
1 ↔ 1
LGc(2125168-2125383)
zebrafish (Danio rerio)
Actinopterygii
irx6a1
iroquois homeobox protein 6a
63.23(n) 58.79(a)
 
474317 NM_001023575.1 NP_001018869.1
fruit fly (Drosophila melanogaster)
Insecta
mirr1
mirror
49.43(n) 41.38(a)
 
39441 NM_168505.1 NP_729818.1
ENSEMBL Gene Tree for IRX6 (if available)TreeFam Gene Tree for IRX6 (if available)
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Paralogsfor IRX6 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for IRX6 gene IRX1 2 IRX3 2 IRX5 2 MKX 2 IRX2 2 IRX4 2 4 SIMAP similar genes for IRX6 using alignment to 1 protein entry: IRX6_HUMAN :TGIF1 IRX4 IRX1 IRX3
IRX6 for paralogs About GeneDecksing
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Genomic Variantsfor IRX6 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 16 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for IRX6 (55357672 - 55364672 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for IRX6 1 CNV : 4956
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing IRX6
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Disorders
/ Diseasesfor IRX6 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
IRX6 for disorders About GeneDecksing
OMIM gene information: 606196
OMIM disorders : --3 diseases for IRX6 : About MalaCards brugada syndrome astigmatism keratoconus 1 disease from the University of Copenhagen DISEASES database for IRX6 :Astigmatism Export disorders for IRX6 gene to outside databases
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Publicationsfor IRX6 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for IRX6 gene, integrated from 9 sources (see all 11 ): (articles sorted by number of sources associating them with IRX6) Utopia : connect your pdf to the dynamic world of online information
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. (PubMed id 22589738) 1 Fox C.S....Borecki I.B. (2012) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Cloning and chromosome mapping of human and chicken Iroquois (IRX) genes. (PubMed id 11435706) 1 Ogura K.... Ogura T. (2001) Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id ) 2 Aoki H.... Hino O. (2000) Regulated expression patterns of IRX-2, an Iroquois-class homeobox gene, in the human breast. (PubMed id 10370142) 1 Lewis M.T.... Daniel C.W. (1999) Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548) 1 Bonaldo M.F.... Soares M.B. (1996) Irx3 is differentially up-regulated in female gonads during sex determination. (PubMed id 15963769) 9 Jorgensen J.S. and Gao L. (2005) Identification of biomarkers in Dupuytren's disease by comparative analysis of fibroblasts versus tissue biopsies in disease-specific phenotypes. (PubMed id 19121738) 9 Shih B....Bayat A. (2009)
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External Searches for IRX6 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing IRX6 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing IRX6 gene
(According to HUGE )
About This Section --
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Specialized Databases showing IRX6 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for IRX6 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for IRX6 gene: Search GeneIP for patents involving IRX6 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor IRX6 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for IRX6 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for IRX6 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for IRX6 OriGene Protein Over-expression Lysate for IRX6 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for IRX6 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for IRX6 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for IRX6 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for IRX6 OriGene Custom Protein Services for IRX6 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat IRX6 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing IRX6 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat IRX6 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat IRX6 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat IRX6 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat IRX6
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IRX6 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IRX6
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat IRX6
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