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IRGQ Gene

protein-coding   GIFtS: 42
GCID: GC19M044090

Immunity-Related GTPase Family, Q

(Previous names: immunity-related GTPase family, Q1)
(Previous symbol: IRGQ1)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Immunity-Related GTPase Family, Q1 2
IRGQ11 2 3
Immunity-Related GTPase Family, Q11 2
Immunity-Related GTPase Family Q Protein2

External Ids:    HGNC: 248681   Entrez Gene: 1262982   Ensembl: ENSG000001673787   UniProtKB: Q8WZA93   

Export aliases for IRGQ gene to outside databases

Previous GC identifers: GC19M048792 GC19M040519


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for IRGQ Gene:
IRGQ (immunity-related GTPase family, Q) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000019.9  NT_011109.17  NC_018930.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the IRGQ gene promoter:
         CUTL1   AP-2gamma   CBF-C   CBF-B   CBF-A   COMP1   c-Myb   CP1C   CP1A   NF-Y   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): IRGQ promoter sequence
   Search Chromatin IP Primers for IRGQ

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat IRGQ


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.31   Ensembl cytogenetic band:  19q13.31   HGNC cytogenetic band: 19q13.31

IRGQ Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
IRGQ gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M044090:  view genomic region     (about GC identifiers)

Start:
44,088,519 bp from pter      End:
44,100,287 bp from pter
Size:
11,769 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: IRGQ_HUMAN, Q8WZA9 (See protein sequence)
Recommended Name: Immunity-related GTPase family Q protein  
Size: 623 amino acids; 62717 Da
Secondary accessions: B2RNP3

Explore the universe of human proteins at neXtProt for IRGQ: NX_Q8WZA9

Explore proteomics data for IRGQ at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See IRGQ Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001007562.1  
    ENSEMBL proteins: 
     ENSP00000472250   ENSP00000470686   ENSP00000387535  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    ProtoNet protein and cluster: Q8WZA9


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for IRGQ

    miRNA
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    miRTarBase miRNAs that target IRGQ:
    hsa-mir-423-3p (MIRT042460), hsa-mir-744-5p (MIRT037718), hsa-mir-29c-3p (MIRT020385), hsa-mir-92a-3p (MIRT049672), hsa-mir-18a-5p (MIRT050730), hsa-mir-331-3p (MIRT043468), hsa-mir-34a-5p (MIRT025346), hsa-let-7e-5p (MIRT051680)

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    Selected qRT-PCR Assays for microRNAs that regulate IRGQ (see all 33):
    hsa-let-7d hsa-miR-29a hsa-miR-486-3p hsa-miR-3921 hsa-miR-766 hsa-miR-3167 hsa-let-7g hsa-let-7a
    SwitchGear 3'UTR luciferase reporter plasmidIRGQ 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    nucleus2
    plasma membrane2
    mitochondrion1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for IRGQ
    Interactions:

        Search GeneGlobe Interaction Network for IRGQ

    2 Interacting proteins for IRGQ (Q8WZA93) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    GABARAPL2P605203I2D: score=3 
    --Q6FG913I2D: score=1 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for IRGQ



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for IRGQ gene: 
    NM_001007561.2  

    Unigene Cluster for IRGQ:

    Immunity-related GTPase family, Q
    Hs.6217  [show with all ESTs]
    Unigene Representative Sequence: NM_001007561
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000596409 ENST00000601520 ENST00000602269 ENST00000598324 ENST00000422989(uc002oww.2 uc010eiv.2)

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    Selected qRT-PCR Assays for microRNAs that regulate IRGQ (see all 33):
    hsa-let-7d hsa-miR-29a hsa-miR-486-3p hsa-miR-3921 hsa-miR-766 hsa-miR-3167 hsa-let-7g hsa-let-7a
    SwitchGear 3'UTR luciferase reporter plasmidIRGQ 3' UTR sequence
    Inhib. RNA
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      QuantiFast Probe-based Assays in human, mouse, rat IRGQ

    Additional mRNA sequence: 

    AF322648.1 AK022583.1 AK096168.1 AK124786.1 AK128554.1 BC137020.1 BC137021.1 BC144451.1 

    7 DOTS entries:

    DT.452174  DT.95350758  DT.421587  DT.207782  DT.95367690  DT.40235939  DT.87016288 

    Selected AceView cDNA sequences (see all 374):

    AI125175 BM831688 BQ720645 BQ066716 AK124786 BQ068180 BM928576 F05480 
    AL134428 BE252183 CR610347 BM802866 F13079 CR600609 BQ058190 BF940405 
    BM698936 BG258140 CR617745 AI983314 F08201 BM831569 F06425 BI768932 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    IRGQ expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AAGGACACAT
    IRGQ Expression
    About this image

    IRGQ Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    IRGQ Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.6217
        Custom PCR Arrays for IRGQ
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IRGQ

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for IRGQ gene from Selected species (see all 5)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Irgq1 , 5 immunity-related GTPase family, Q1, 5 79.61(n)1
    83.68(a)1
      7 (11.32 cM)5
    2101461  NM_153134.31  NP_694774.31 
     245306485 


    ENSEMBL Gene Tree for IRGQ (if available)
    TreeFam Gene Tree for IRGQ (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for IRGQ (see all 208)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1381049411,2
    --44088048(+) AGGAGA/GACCAC 1 -- int10--------
    rs1495561811,2
    C--44088261(+) TCCAGC/TCTGGG 1 -- int10--------
    rs1432476901,2
    --44088281(+) GAGACC/TCTGTC 1 -- int10--------
    rs787434341,2
    F--44088326(+) TGAATG/ATGGCC 1 -- int11Minor allele frequency- A:0.01WA 118
    rs1834292091,2
    --44088351(+) AGGAAC/GTCTAC 1 -- int10--------
    rs1849245321,2
    --44088367(+) GTAATC/TACATG 1 -- int10--------
    rs1468251961,2
    C--44088374(+) ATGCT-/GTGA  
     CCCAGAA
    GTGAC
    1 -- int10--------
    rs4052001,2
    C--44088380(-) TATTAA/TGTCAC 1 -- int10--------
    rs744769721,2
    C--44088380(+) TGACA-/CAGAAGTGACT
    /CT/GAAGTGACT
    TAATA
    2 -- int1 cds10--------
    rs1483160201,2
    --44088397(+) ACTGGA/GTGGAG 1 -- int10--------

    HapMap Linkage Disequilibrium report for IRGQ (44088519 - 44100287 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for IRGQ:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv833839CNV Loss17160897

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing IRGQ
    DNA2.0 Custom Variant and Variant Library Synthesis for IRGQ

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    Find genes that share disorders with IRGQ           About GenesLikeMe

    Genetic Association Database (GAD): IRGQ
    Human Genome Epidemiology (HuGE) Navigator: IRGQ (1 document)

    Export disorders for IRGQ gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for IRGQ gene, integrated from 10 sources (see all 11):
    (articles sorted by number of sources associating them with IRGQ)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. (PubMed id 19773279)1, 4 Hosgood H.D....Lan Q. (Occup Environ Med 2009)
    2. The interferon-inducible p47 (IRG) GTPases in vertebrates: loss of the cell autonomous resistance mechanism in the human lineage. (PubMed id 16277747)1, 3 Bekpen C.... Howard J.C. (Genome Biol. 2005)
    3. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
    4. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008)
    5. Large-scale mapping of human protein-protein interactions by mass spectrometry. (PubMed id 17353931)1 Ewing R.M....Figeys D. (Mol. Syst. Biol. 2007)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    7. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)
    8. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PubMed id 15146197)1 Brandenberger R.... Stanton L.W. (Nat. Biotechnol. 2004)
    9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    10. Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)1 Bonaldo M.F.... Soares M.B. (Genome Res. 1996)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 126298 HGNC: 24868 AceView: XRCC1 Ensembl:ENSG00000167378 euGenes: HUgn126298
    ECgene: IRGQ H-InvDB: IRGQ

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for IRGQ Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for IRGQ gene:
    Search GeneIP for patents involving IRGQ

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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