Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

IRF9 Gene

protein-coding   GIFtS: 60
GCID: GC14P024630

interferon regulatory factor 9

(Previous names: interferon-stimulated transcription factor 3, gamma (48kD),...)
(Previous symbol: ISGF3G)
 Explore 28 diseases affiliated with
IRF9 via our new
 Human Malady Compendium 
Biological research products
for IRF9
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Interferon Regulatory Factor 91 2     IRF-92 3
ISGF3G1 2 3 5     IFN-Alpha-Responsive Transcription Factor Subunit2 3
Interferon-Stimulated Transcription Factor 3, Gamma (48kD)1 2     ISGF-3 Gamma2 3
Interferon-Stimulated Transcription Factor 3, Gamma 48kDa1 2     ISGF3 P48 Subunit2 3
Interferon-Stimulated Gene Factor 3 Gamma2 3     ISGF32 5
Transcriptional Regulator ISGF3 Subunit Gamma2 3     P481

External Ids:    HGNC: 61311   Entrez Gene: 103792   Ensembl: ENSG000002139287   OMIM: 1475745   UniProtKB: Q009783   

Export aliases for IRF9 gene to outside databases

Previous GC identifers: GC14P023702 GC14P023690 GC14P004745


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: IRF9_HUMAN, Q00978
Function: Transcription regulatory factor that mediates signaling by type I IFNs (IFN-alpha and IFN-beta). Following
type I IFN binding to cell surface receptors, Jak kinases (TYK2 and JAK1) are activated, leading to tyrosine
phosphorylation of STAT1 and STAT2. The phosphorylated STATs dimerize, associate with IRF9/ISGF3G to form a complex
termed ISGF3 transcription factor, that enters the nucleus. ISGF3 binds to the IFN stimulated response element (ISRE)
to activate the transcription of interferon stimulated genes, which drive the cell in an antiviral state

Gene Wiki entry for IRF9


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000014.8  NC_018925.1  NT_026437.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the IRF9 gene promoter:
         AML1a   STAT3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): IRF9 promoter sequence
   Search SABiosciences Chromatin IP Primers for IRF9

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IRF9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q11.2   Ensembl cytogenetic band:  14q12   HGNC cytogenetic band: 14q11.2

IRF9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
IRF9 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14P024630:  view genomic region     (about GC identifiers)

Start:
24,630,262 bp from pter      End:
24,635,774 bp from pter
Size:
5,513 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: IRF9_HUMAN, Q00978 (See protein sequence)
Recommended Name: Interferon regulatory factor 9  
Size: 393 amino acids; 43696 Da
Subunit: Interacts with STAT2 in the cytoplasm. Forms a complex with heterodimer STAT1/STAT2
Subcellular location: Cytoplasm. Nucleus. Note=Translocated into the nucleus upon activation by IFN-alpha/beta
Secondary accessions: D3DS61

Explore the universe of human proteins at neXtProt for IRF9: NX_Q00978

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q00978

  • IRF9 Protein expression data from MOPED and PaxDb:    About this image 
    IRF9 Protein Expression
    REFSEQ proteins: NP_006075.3  
    ENSEMBL proteins: 
     ENSP00000380073   ENSP00000453534   ENSP00000453974   ENSP00000453540   ENSP00000454095  
     ENSP00000454078   ENSP00000313529  
    Reactome Protein details: Q00978
    Human Recombinant Protein Products for IRF9: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein: IRF9
    OriGene Protein Over-expression Lysate: IRF9
    OriGene Custom Protein Services for IRF9 
    GenScript Custom Purified and Recombinant Proteins Services for IRF9
    Novus Biologicals IRF9 Protein
    Novus Biologicals IRF9 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for IRF9

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus TAS1630447
    GO:0005654nucleoplasm TAS--
    GO:0005737cytoplasm IDA--
    GO:0005829cytosol TAS--

    IRF9 for ontologies           About GeneDecksing



    IRF9 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    R&D Systems Antibodies for IRF9
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for IRF9 
    GenScript Custom Superior Antibodies Services for IRF9
    Novus Biologicals IRF9 Antibodies
    Abcam antibodies for IRF9 
    Uscn Antibodies for IRF9
    ThermoFisher Antibodies for IRF9

    Assay Products for IRF9: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for IRF9
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for IRF9


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    IRF9 for domains           About GeneDecksing

    5/6 InterPro domains/families (see all 6):
     IPR011991 WHTH_trsnscrt_rep_DNA-bd_dom
     IPR001346 Interferon_reg_fact_DNA-bd_dom
     IPR008984 SMAD_FHA_domain
     IPR019817 Interferon_reg_fac_CS
     IPR017855 SMAD_dom-like

    Graphical View of Domain Structure for InterPro Entry Q00978

    ProtoNet protein and cluster: Q00978

    1 Blocks protein family: IPB001346 Interferon regulatory factor

    UniProtKB/Swiss-Prot: IRF9_HUMAN, Q00978
    Similarity: Belongs to the IRF family
    Similarity: Contains 1 IRF tryptophan pentad repeat DNA-binding domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: IRF9_HUMAN, Q00978
    Function: Transcription regulatory factor that mediates signaling by type I IFNs (IFN-alpha and IFN-beta). Following
    type I IFN binding to cell surface receptors, Jak kinases (TYK2 and JAK1) are activated, leading to tyrosine
    phosphorylation of STAT1 and STAT2. The phosphorylated STATs dimerize, associate with IRF9/ISGF3G to form a complex
    termed ISGF3 transcription factor, that enters the nucleus. ISGF3 binds to the IFN stimulated response element (ISRE)
    to activate the transcription of interferon stimulated genes, which drive the cell in an antiviral state
    Induction: By IFN-alpha and IFNB1/IFN-beta

         Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000975regulatory region DNA binding IEA--
    GO:0003700sequence-specific DNA binding transcription factor activity IEA--
    GO:0005515protein binding IPI--
         
    IRF9 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for IRF9:
     Synthetic lethal with c-Myc af 

         3 MGI mutant phenotypes (inferred from 1 allele(MGI details for Irf9):
     immune system  integument  skeleton 

    IRF9 for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-out Irf9tm1Ttg for IRF9
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for IRF9 

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: IRF9
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat IRF9
    8/27 QIAGEN miScript miRNA Assays for microRNAs that regulate IRF9 (see all 27):
    hsa-miR-142-5p hsa-miR-302d hsa-miR-520e hsa-miR-520f hsa-miR-106a hsa-miR-302e hsa-miR-340 hsa-miR-373*
    SwitchGear 3'UTR luciferase reporter plasmidIRF9 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for IRF9 (see all 4)
    OriGene shRNA RFP: IRF9
    OriGene siRNA: IRF9
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat IRF9
    Sirion Biotech Custom design and validation of potent shRNA sequences against IRF9 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for IRF9
    Sirion Biotech Customized adenovirus for overexpression of IRF9 
    Sirion Biotech Customized adenovirus for potent knockdown of IRF9

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for IRF9 (see all 5)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for IRF9
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: IRF9 (NM_006084)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for IRF9
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat IRF9 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for IRF9
    Search LifeMap BioReagents cell lines for IRF9
    Sirion Biotech Customized stable knockdown cell line services for IRF9 
    Sirion Biotech Customized inducible knockdown cell line services for IRF9
    Sirion Biotech Customized stable overexpressing cell line services for IRF9
    Sirion Biotech Customized inducible overexpressing cell line services for IRF9

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IRF9


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/11 super-pathways (see all 11About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Immune response_IFN gamma signaling pathway
    Immune response_IFN gamma signaling pathway1.00
    IFN-gamma pathway0.43
    Immune response IFN gamma signaling pathway1.00
    2Cytokine Signaling in Immune system
    Cytokine Signaling in Immune system1.00
    Interferon Signaling0.61
    3Expression of IFN-induced genes
    Expression of IFN-induced genes1.00
    Interferon alpha/beta signaling0.61
    4Interferon gamma signaling
    Interferon gamma signaling1.00
    Expression of IFNG-stimulated genes0.72
    5Measles
    Measles1.00
    Influenza A0.35

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    2 EMD Millipore Pathways for IRF9
        Immune response IFN gamma signaling pathway
    Immune response IFN alpha/beta signaling pathway


    2 GeneGo (Thomson Reuters) Pathways for IRF9
        Immune response IFN gamma signaling pathway
    Immune response IFN alpha/beta signaling pathway

    2 BioSystems Pathways for IRF9 
        Type II interferon signaling (IFNG)
    IFN-gamma pathway

    5/7        Reactome Pathways for IRF9 (see all 7)
        Interferon alpha/beta signaling
    Interferon gamma signaling
    Cytokine Signaling in Immune system
    Expression of IFN-induced genes
    Expression of IFNG-stimulated genes


    5         Kegg Pathways  (Kegg details for IRF9):
        Osteoclast differentiation
    Jak-STAT signaling pathway
    Hepatitis C
    Measles
    Influenza A


    IRF9 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for IRF9

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/106 Interacting proteins for IRF9 (Q009781, 2, 3 ENSP000003800734) via UniProtKB, MINT, STRING, and/or I2D (see all 106)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ATN1P542592, 3, ENSP000003490764MINT-2873996 I2D: score=1 STRING: ENSP00000349076
    GFI1BQ5VTD92, 3, ENSP000003447824MINT-2874034 I2D: score=1 STRING: ENSP00000344782
    IFNA1P015623, ENSP000002769274I2D: score=1 STRING: ENSP00000276927
    STAT2P526301, 3, ENSP000003157684EBI-626526,EBI-1546963 I2D: score=6 STRING: ENSP00000315768
    IFNAR2P485511, 3, ENSP000003439574EBI-626526,EBI-958408 I2D: score=6 STRING: ENSP00000343957
    About this table

    Gene Ontology (GO): 5/9 biological process terms (GO ID links to tree view) (see all 9):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006355regulation of transcription, DNA-dependent ----
    GO:0006366transcription from RNA polymerase II promoter TAS1630447
    GO:0007166cell surface receptor signaling pathway TAS1630447
    GO:0009615response to virus ----
    GO:0019221cytokine-mediated signaling pathway TAS--

    IRF9 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    IRF9 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for IRF9
    8 Novoseek chemical compound relationships for IRF9 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    2',5'-oligoadenylate 70.5 3 9186002 (1), 8836915 (1), 10229853 (1)
    ifn-alpha 57.2 5 11106638 (4)
    tyrosine 53 17 1280824 (4), 9325014 (1), 12704120 (1), 19351818 (1) (see all 14)
    genistein 39.8 4 1280824 (1), 9325014 (1), 17559358 (1)
    retinoic acid 34.6 6 9186002 (3), 9669677 (1), 10435617 (1)
    cycloheximide 28.7 3 11882993 (1), 2118988 (1)
    adenine 7.14 5 1556141 (2), 2118988 (2)
    oligonucleotide 6.08 2 20038197 (1)

    Search CenterWatch for drugs/clinical trials and news about IRF9 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for IRF9 gene: 
    NM_006084.4  

    Unigene Cluster for IRF9:

    Interferon regulatory factor 9
    Hs.1706  [show with all ESTs]
    Unigene Representative Sequence: AK295467
    15 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000396864(uc010alj.3) ENST00000557894 ENST00000561342 ENST00000561009
    ENST00000560365 ENST00000561415 ENST00000559284 ENST00000560275 ENST00000561412
    ENST00000560852 ENST00000324076 ENST00000559863 ENST00000559229 ENST00000560542
    ENST00000560311

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: IRF9
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat IRF9
    8/27 QIAGEN miScript miRNA Assays for microRNAs that regulate IRF9 (see all 27):
    hsa-miR-142-5p hsa-miR-302d hsa-miR-520e hsa-miR-520f hsa-miR-106a hsa-miR-302e hsa-miR-340 hsa-miR-373*
    SwitchGear 3'UTR luciferase reporter plasmidIRF9 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for IRF9 (see all 4)
    OriGene shRNA RFP: IRF9
    OriGene siRNA: IRF9
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat IRF9
    Sirion Biotech Custom design and validation of potent shRNA sequences against IRF9 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for IRF9 (see all 5)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for IRF9
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: IRF9 (NM_006084)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for IRF9
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat IRF9 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for IRF9
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat IRF9
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IRF9
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IRF9

    Additional cDNA sequence: 

    AK295467.1 AK308347.1 BC035716.2 M87503.1 U92994.1 

    15 DOTS entries:

    DT.312276  DT.87013010  DT.91987503  DT.120772566  DT.75161376  DT.100655274  DT.75106086  DT.87016063 
    DT.120772553  DT.100851623  DT.95236944  DT.99987526  DT.100655271  DT.100712018  DT.95236945 

    24/410 AceView cDNA sequences (see all 410):

    CA305900 BM983142 BX378006 BM667985 BM696953 CR609755 BM708088 BG058600 
    CA308170 BM693231 BM906740 BF516479 BU195806 AI872365 BX477441 CB126210 
    BM826910 CD171831 BM811285 BI823840 BM807974 BM825698 BC009821 AI828982 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    IRF9 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GCTCCAGCCA
    IRF9 Expression
    About this image
    See IRF9 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for IRF9

    SOURCE GeneReport for Unigene cluster: Hs.1706
        SABiosciences Expression via Pathway-Focused PCR Arrays including IRF9: 

              Type I Interferon Response in human mouse rat
              JAK / STAT Signaling Pathway in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for IRF9
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat IRF9
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IRF9
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IRF9
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IRF9

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for IRF9 gene from 2/13 species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    --
    32(a)
    31(a)
    1 ↔ many
    1 ↔ many
    AAWZ02037623(1077-3986)
    AAWZ02036190(50-8933)
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.123082 Danio rerio clone RK124A3H10 interferon-stimulated transcription factor 3, gamma 48kDa (ISGF3G) mRNA, complete cds less 74.29(n)    AY398365.1 


    ENSEMBL Gene Tree for IRF9 (if available)
    TreeFam Gene Tree for IRF9 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for IRF9 gene
    IRF82  IRF22  IRF52  IRF32  IRF12  IRF72  IRF62  IRF42  
    7 SIMAP similar genes for IRF9 using alignment to 6 protein entries:     IRF9_HUMAN (see all proteins):
    IRF8    IRF4    IRF1    IRF3    IRF2    IRF5
    IRF7

    IRF9 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for IRF9
    PGOHUM00000247509


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/146 NCBI SNPs in IRF9 are shown (see all 146    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1862636301,2
    --24628445(+) CACCTA/GCTCGG 2 -- us2k1 int10--------
    rs726587541,2
    C,F--24628449(+) TACTCG/AGGTGG 2 -- us2k1 int12Minor allele frequency- A:0.50WA CSA 4
    rs1905875261,2
    --24628513(+) ATTGCA/GCCATT 2 -- us2k1 int10--------
    rs1481561471,2
    --24628521(+) ATTGCA/GCTCCA 2 -- us2k1 int10--------
    rs679035291,2
    C,F--24628529(+) CCAGTG/CCAGCC 2 -- int1 us2k12Minor allele frequency- C:0.50WA 4
    rs1473387021,2
    --24628531(+) AGTCCA/CGCCTG 2 -- us2k1 int10--------
    rs2011238211,2
    --24628733(+) AAAAT-/AAAAAA 2 -- int1 us2k10--------
    rs1408996031,2
    --24628914(+) TTGACA/GGCACC 2 -- us2k1 int10--------
    rs797119511,2
    --24629004(+) TGTGGA/GTATCC 2 -- int1 us2k10--------
    rs1508419051,2
    C--24629032(+) GGTCAC/TTGGCC 2 -- us2k1 int10--------

    HapMap Linkage Disequilibrium report for IRF9 (24630262 - 24635774 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for IRF9
         1 Inversion: 37155

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing IRF9
    DNA2.0 Custom Variant and Variant Library Synthesis for IRF9

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    IRF9 for disorders           About GeneDecksing

    OMIM gene information: 147574    OMIM disorders: --

    20/28 diseases for IRF9 (see all 28):    About MalaCards
    ebola hemorrhagic fever    malignant pleural mesothelioma    lymphocytic choriomeningitis    hemorrhagic fever
    transitional cell carcinoma    myeloid leukemia    kaposi's sarcoma    hepatitis b
    mumps    bronchiolitis    squamous cell carcinoma    cervical carcinoma
    multiple sclerosis    hepatitis c    stomatitis    cervicitis
    measles    hepatitis    sarcoma    carcinoma

    1 disease from the University of Copenhagen DISEASES database for IRF9:
    Ebola hemorrhagic fever

    9 Novoseek disease relationships for IRF9 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    virus infection 31.8 2 8836915 (1), 11747630 (1)
    cervical carcinoma 21.6 2 17266037 (1)
    myeloid leukemia 19.2 2 9186002 (2)
    primary tumor 0.695 1 19715403 (1)
    tumors 0 6 15187113 (1), 19715403 (1), 15714000 (1), 11739693 (1) (see all 5)
    hepatitis b 0 1 10497156 (1)
    melanoma 0 1 9748142 (1)
    cancer 0 1 8289823 (1)
    tuberculosis 0 1 10925286 (1)

    Human Genome Epidemiology (HuGE) Navigator: IRF9 (9 documents)

    Export disorders for IRF9 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for IRF9 gene, integrated from 9 sources (see all 177):
    (articles sorted by number of sources associating them with IRF9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Subunit of an alpha-interferon-responsive transcription factor is related to interferon regulatory factor and Myb families of DNA- binding proteins. (PubMed id 1630447)1, 2, 3, 9 Veals S.A.... Levy D.E. (1992)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Nuclear/cytoplasmic localization of IRFs in response to viral infection or interferon stimulation. (PubMed id 11846981)1, 2 Reich N.C. (2002)
    4. Organization of the genes encoding the human proteasome activators PA28alpha and beta. (PubMed id 10199920)1, 3 McCusker D....Trowsdale J. (1999)
    5. Viral inhibition of interferon signal transduction. (PubMed id 10702714)1, 2 Cebulla C.M.... Sedmak D.D. (1999)
    6. Role of ISGF3 in modulating the anti-hepatitis B virus activity of interferon-alpha in vitro. (PubMed id 17559358)1, 9 Zhang Q....Cong X. (2008)
    7. Interferon regulatory factor subcellular localization is determined by a bipartite nuclear localization signal in the DNA-binding domain and interaction with cytoplasmic retention factors. (PubMed id 10860992)1, 9 Lau J.F....Horvath C.M. (2000)
    8. IFN-beta-mediated inhibition of IL-8 expression requires the ISGF3 components Stat1, Stat2, and IRF-9. (PubMed id 18370868)1, 9 Laver T....Benveniste E.N. (2008)
    9. [A novel molecular mechanism of interferon alpha-regu lated expression of retinoic acid-induced gene G] (PubMed id 20403236)1, 9 Lou Y.J....Tong J.H. (2010)
    10. Role of metazoan mediator proteins in interferon-responsive transcription. (PubMed id 12509459)1, 9 Lau J.F.... Horvath C.M. (2003)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 10379 HGNC: 6131 AceView: ISGF3GandRNF31 Ensembl:ENSG00000213928 euGenes: HUgn10379
    ECgene: IRF9 Kegg: 10379 H-InvDB: IRF9

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for IRF9 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for IRF9 gene:
    Search GeneIP for patents involving IRF9

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Antibodies for IRF9 (IRF9)   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for IRF9  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for IRF9   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for IRF9  
     OriGene Protein Over-expression Lysate for IRF9   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for IRF9   OriGene 3'-UTR Clone for IRF9  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for IRF9   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for IRF9  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     OriGene Purified Protein for IRF9   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for IRF9   OriGene Custom Protein Services for IRF9  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat IRF9
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing IRF9
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IRF9
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat IRF9
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IRF9
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IRF9
     GenScript Custom Purified and Recombinant Proteins Services for IRF9 GenScript cDNA clones with any tag delivered in your preferred vector for IRF9
     GenScript Custom Assay Services for IRF9 GenScript Custom Superior Antibodies Services for IRF9
     GenScript Custom overexpressing Cell Line Services for IRF9 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in IRF9 promoter
     Search Chromatin IP Primers for IRF9
     RT2 qPCR Primer Assay in human, mouse, rat IRF9
     GNC Network for IRF9
     SABiosciences PCR Arrays including human, mouse, rat IRF9
     Search Tocris compounds for IRF9
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     IRF9 antibodies
     IRF9 proteins
     IRF9 lysates
     Antibodies for IRF9
     See all of Abcam's Antibodies, Kits and Proteins for IRF9
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     IRF9 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for IRF9
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IRF9
     SwitchGear 3'UTR luciferase reporter plasmids for IRF9
     SwitchGear Promoter luciferase reporter plasmids for IRF9
     ThermoFisher Antibodies for IRF9
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat IRF9
     inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for IRF9
    Sirion Biotech Customized:
     stable knockdown cell line services for IRF9
     inducible knockdown cell line services for IRF9
     design and validation of potent shRNA sequences against IRF9
     adenovirus for potent knockdown of IRF9
     adenovirus for overexpression of IRF9
     stable overexpressing cell line services for IRF9
     inducible overexpressing cell line services for IRF9
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013 , 14 May 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      IRF9 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 106 solr: 1.4