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IRF4 Gene

protein-coding   GIFtS: 63

GC06P000336
interferon regulatory factor 4
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: MUM1)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
IRF-4 3
LSIRF 1, 2, 3, 5
MUM1 2, 3
NF-EM5 3
OTTHUMP00000017905 2
Descriptions
Lymphocyte-specific interferon regulatory factor 3
Multiple myeloma oncogene 1 2, 3
interferon regulatory factor 4 2
External Ids
HGNC: 61191
Entrez Gene: 36622
UniProtKB: Q153063
Ensembl: ENSG000001372657
Search outside databases for aliases for IRF4 gene

Previous GC identifers: GC06U990070 GC06P000377

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: IRF4_HUMAN, Q15306
Function: Transcriptional activator. Binds to the interferon-stimulated response element (ISRE) of
the MHC class I promoter. Binds the immunoglobulin lambda light chain enhancer, together with
PU.1. Probably plays a role in ISRE-targeted signal transduction mechanisms specific to lymphoid
cells

Gene Wiki entry for IRF4

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the IRF4 gene  

Entrez Gene cytogenetic band: 6p25-p23   Ensembl cytogenetic band:  6p25.3   HGNC cytogenetic band: 6p25-p23

IRF4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06P000336:     (about GC identifiers)

Start:
336,760 bp from pter
End:
356,193 bp from pter
Size:
19,434 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000006.10  NT_034880.3  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: IRF4_HUMAN, Q15306 (See protein sequence)
Recommended Name: Interferon regulatory factor 4  
Size: 451 amino acids; 51772 Da
Subunit: Interacts with SPIB and DEF6
Subcellular location: Nucleus
PDB structures from and Proteopedia :
2DLL (3D)    
Secondary accessions: Q5VUI7 Q99660
Alternative splicing: 2 isoforms:  Q15306-1   Q15306-2   

REFSEQ proteins: NP_002451.2  

ENSEMBL proteins: 
ENSP00000370343 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (MUM1)
Human Recombinant Proteins from Abnova (IRF4)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005634 nucleus IC12374808
GO:0005737 cytoplasm IDA18029348
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Antibodies for IRF4: 
Invitrogen Antibodies for IRF4
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for IRF4
R&D Systems Antibodies for IRF4
Cell Signaling Technology (CST) Antibodies for IRF4  (IRF)
Antibodies from Abcam (MUM1), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (IRF4)
Novus Biologicals Antibodies for IRF4

Assays for IRF4: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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5 InterPro domains/families:
 IPR011991 Wing_hlx_DNA_bd
 IPR001346 Interferon_regulatory_factor
 IPR019817 Interferon_regulatory_fac_CS
 IPR017855 SMAD_dom-like
 IPR019471 Interferon_regulatory_factor-3


   GeneDecks  IRF4 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry Q15306

ProtoNet protein and cluster: Q15306

1 Blocks protein family: IPB001346 Interferon regulatory factor

UniProtKB/Swiss-Prot: IRF4_HUMAN, Q15306
Similarity: Belongs to the IRF family
Similarity: Contains 1 tryptophan pentad repeat DNA-binding domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (IRF4)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (IRF4)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): BC015752

              Applied Biosystems Silencer® siRNAs for IRF4

              Sigma-Aldrich siRNA for IRF4  
                     Sigma-Aldrich shRNA Panels and shRNA for IRF4  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for IRF4
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002460
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_002460
                                 untagged cDNA clones in CMV expression vector (see all 2): BC015752 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: BC015752

UniProtKB/Swiss-Prot: IRF4_HUMAN, Q15306
Function: Transcriptional activator. Binds to the interferon-stimulated response element (ISRE) of
the MHC class I promoter. Binds the immunoglobulin lambda light chain enhancer, together with
PU.1. Probably plays a role in ISRE-targeted signal transduction mechanisms specific to lymphoid
cells
Induction: Not induced by interferons

Genatlas biochemistry entry for IRF4:
interferon regulatory factor 4,lymphocyte-specific, controlling the B-cell proliferation and
differentiation,protooncogene deregulated in multiple myeloma with translocation t(6;14)(p25;q32)
(see MUM1)

3 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Irf4):

hematopoietic systemimmune systemtumorigenesis

4 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0003700 transcription factor activity NAS12374808
GO:0003702 RNA polymerase II transcription factor activity TAS8921401
GO:0008134 transcription factor binding NAS12374808
GO:0016563 transcription activator activity IDA12374808
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Millipore Pathway for IRF4
 Immune response IL-12 signaling pathway

   GeneDecks  IRF4 for the pathways selected above  
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for  IRF4  (Your Favorite Gene powered by Ingenuity) 
 Role of Pattern Recognition Receptors in Recognition of Bacteria and Viruses
 IL-4 Signaling

   GeneDecks  IRF4 for the pathways selected above  
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 Gene Network CentralTM Interacting Genes and Proteins Network for  IRF4 


5/60 Interacting proteins for IRF4 (ENSP000003703433) via UniProtKB, MINT, and/or STRING (see all 60 )
InteractantInteraction Details
GeneCardExternal ID(s)
BCL6ENSP000002320143STRING (score=.999)
NFATC2ENSP000003606223STRING (score=.997)
PRDM1ENSP000000712463STRING (score=.979)
SPI1ENSP000003677993STRING (score=.978)
MAFENSP000003270483STRING (score=.964)
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5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0006355 regulation of transcription, DNA-dependent IEA--
GO:0042110 T cell activation NAS12374808
GO:0043011 myeloid dendritic cell differentiation IEA--
GO:0045082 positive regulation of interleukin-10 biosynthetic process IDA12374808
GO:0045086 positive regulation of interleukin-2 biosynthetic process IDA12374808
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for IRF4

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (IRF4)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (IRF4)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): BC015752

              Sigma-Aldrich siRNA for IRF4  
                     Sigma-Aldrich shRNA Panels and shRNA for IRF4  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_002460  

REFSEQ mRNAs for IRF4 gene: 

NM_002460.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_002460  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002460
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_002460
                                 untagged cDNA clones in CMV expression vector (see all 2): BC015752 

Additional cDNA sequence: 

AK130762.1 AK310149.1 BC015752.1 D78261.1 U52682.1 U63738.1 

7 DOTS entries:

DT.95373806  DT.415498  DT.101954966  DT.101967303  DT.100027176  DT.121369596  DT.121369597 

24/202 AceView cDNA sequences (see all 202 ):

BG230623 AI125911 BM466161 AI224170 BM472499 BP338226 AA377285 BQ213771 
BX112230 BX646222 AW204321 BG762018 CD520520 AW407522 BQ221956 BU838100 
AW452687 BQ683656 AW448970 AA227826 BG390289 BU147350 AI824002 CD521701 

highest scoring ESTs for IRF4:

D78261 U52682 AA255768 BC015752 BE151052 BF128693 BM551611 BQ425272 CF137158 CF137957 

Unigene Cluster for IRF4:

Interferon regulatory factor 4
Hs.401013  [show with all ESTs]
Unigene Representative Sequence: U52682


GeneLoc Exon Structure

5/9 Alternative Splicing Database (ASD) splice patterns (SP) for IRF4 (see all 9 )

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c · 6d ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11
SP1:                                      -     -           -     -                 -                       -           -         
SP2:                                      -     -           -     -                 -                       -           -         
SP3:                                      -     -           -     -                 -                       -                     
SP4:                          -           -     -           -     -                 -                                             
SP5:                                                        -     -                                                               

About this scheme

ECgene alternative splicing isoforms for IRF4

1 Ensembl transcript including schematic representation:
ENST00000380956  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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IRF4 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for IRF4

1 / 2 / 3

10 probe-sets matching IRF4 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
59130_at2, 3 U95-C 1 1.00 1.00 0.89 1.19 AA866137 0.60 1.00 0.82 1

37627_g_at2, 3 U95-A 1 1.00 1.00 0.72 0.25 D78261 1.00 1.00 1.00 1

37626_at2, 3 U95-A 1 1.00 1.00 0.49 0.20 D78261 1.00 1.00 1.00 1
37625_at2, 3 U95-A 1 1.00 1.00 0.97 0.85 U52682 1.00 1.00 1.00 1

204562_at2, 3 U133-A 1 1.00 1.00 -- -- NM_002460 0.60 1.00 0.82 1

216986_s_at2, 3 U133-A 1 1.00 1.00 -- -- D78261 1.00 1.00 1.00 1

216987_at2, 3 U133-A 1 1.00 1.00 -- -- D78261 1.00 1.00 1.00 1

204562_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

216986_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

216987_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  IRF4 for binary patterns associated with the probe-sets selected above  
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Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.401013

Expression variation in blood from EXPOLDB for IRF4

UniProtKB/Swiss-Prot: IRF4_HUMAN, Q15306
Tissue specificity: Lymphoid cells

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
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Orthologs for IRF4 gene from 5/6 species (see all 6 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
chimpanzee
(Pan troglodytes)
IRF41   -- interferon regulatory factor 4 99.48(n)
99.11(a)
462386  XM_518201.2  XP_518201.2 
cow
(Bos taurus)
IRF41   -- similar to interferon regulatory factor 4 89.14(n)
93.13(a)
506141  XM_865312.2  XP_870405.2 
rat
(Rattus norvegicus)
Irf41   -- interferon regulatory factor 4 88.44(n)
91.78(a)
291100  XM_225283.4  XP_225283.4 
mouse
(Mus musculus)
Irf41, 5 135
interferon regulatory factor 41, 5 87.93(n)1
91.78(a)1
163641  NM_013674.11  NP_038702.11 
 AI3855875  AK0893195  (see all 16)
chicken
(Gallus gallus)
IRF41   -- interferon regulatory factor 4 80.41(n)
85.14(a)
374179  NM_204299.1  NP_989630.1 
About this table        Species with no ortholog for IRF4

ENSEMBL Gene Tree for IRF4
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
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Paralogs for IRF4 gene
IRF82  IRF92  IRF52  IRF62  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/193 NCBI SNPs in IRF4 are shown (see all 193 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 97)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 6 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs10509751,2
A,C,F,H,O353012(+) GTTCTA/GTAGAC 1 -- ut31 ese312Minor allele frequency- G:0.28MN NA EU EA WA 1140
rs49592481,2
A,C,F,H352882(+) AGGAAC/TTCAGA 1 -- ut31 ese36Minor allele frequency- T:0.03NA EU EA 410
rs8720711,2
A,C,F,H356064(+) AGGGGA/GCGTGA 1 -- ut31 ese314Minor allele frequency- G:0.32MN EA EU WA NA 2862
rs18771751,2
A,C,F,H355493(+) CAGTGG/AAATGA 1 -- ut3113Minor allele frequency- A:0.24MN EA NA EU WA 1150
--
rs93919971,2
A,C,F,H354119(+) TTTCTA/GATGGA 1 -- ut31 ese38Minor allele frequency- N:0.00EA NA EU WA 604
rs93925021,2
A,C,F,H355608(+) CAACTC/GTGGGA 1 -- ut31 ese35Minor allele frequency- G:0.21MN EU EA WA 594
rs77688071,2
A,C,F,H353246(+) ATTAAT/CGTATG 1 -- ut318Minor allele frequency- C:0.32EA NA EU WA 604
rs69066081,2
A,C,F,H356554(+) CAGATC/ATCCAA 1 -- ng3116Minor allele frequency- A:0.14EU EA WA 1678
rs68993341,2
C,F,H335105(+) AAATCT/CGTGAA 1 -- ng514Minor allele frequency- C:0.07EU EA WA 420
rs18771761,2
A,C,F355513(+) ACAGTG/ATTGTT 1 -- ut315Minor allele frequency- A:0.30MN EA NA 380
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HapMap Linkage Disequilibrium images for IRF4 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
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OMIM: 601900

UniProtKB/Swiss-Prot: IRF4_HUMAN, Q15306

  • A chromosomal aberration involving IRF4 may be a cause of multiple myeloma [MIM:254500].
    Translocation t(6;14)(p25;q32) with the IgH locus
  • 10/18 Novoseek disease relationships for IRF4 gene (see all 18 )

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    lymphoma b-cell 74.75 10 15710572 (2), 15959530 (2), 17149956 (1), 18987657 (1) (see all 7)
    leukemia t-cell 58.04 6 11749693 (1), 12218129 (1), 15684621 (1), 10714679 (1)
    lymphoma 57.20 10 18417578 (2), 17138822 (1), 19103865 (1), 17517757 (1) (see all 9)
    plasmacytoma 49.39 3 15507667 (1), 18089822 (1)
    myeloma 48.59 8 18568025 (4), 18987657 (1), 18761464 (1)
    hodgkin disease 41.69 6 18410414 (3), 10706878 (1)
    lymphoma follicular 41.55 3 17296585 (2)
    malt lymphoma 41.29 1 15710572 (1)
    lymphoma non-hodgkins 37.45 1 12594241 (1)
    paraparesis tropical spastic 35.44 1 11846984 (1)
    About this table

    1 PharmGKB disease relationship for IRF4 gene
    Disease PharmGKB Relations PubMed IDs for articles supporting these relationships
    Leukemia, Lymphocytic, Acute, L1FA  GN  12086872 12730115
    About this table

    Human Genome Epidemiology Navigator: IRF4 (5 documents)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/150 PubMed articles for IRF4 gene (see all 150 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 3662 HGNC: 6119 AceView: IRF4 Ensembl:ENSG00000137265 euGenes: HUgn3662
    ECgene: IRF4 H-InvDB: IRF4
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for IRF4 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for IRF4:
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     TaqMan ® Genotyping Assays
      Free SNP selection tool



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