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Aliases & Descriptions for IRF4
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| IRF-4 3 | | LSIRF 1, 2, 3, 5 | | MUM1 2, 3 | | NF-EM5 3 | | OTTHUMP00000017905 2 |
| | | Descriptions |
|---|
| Lymphocyte-specific interferon regulatory factor 3 | | Multiple myeloma oncogene 1 2, 3 | | interferon regulatory factor 4 2 |
|
| | Search outside databases for aliases for IRF4 genePrevious GC identifers: GC06U990070 GC06P000377 |
Summaries for IRF4(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: IRF4_HUMAN, Q15306Function: Transcriptional activator. Binds to the interferon-stimulated response element (ISRE) of the MHC class I promoter. Binds the immunoglobulin lambda light chain enhancer, together with PU.1. Probably plays a role in ISRE-targeted signal transduction mechanisms specific to lymphoid cellsGene Wiki entry for IRF4 |
Genomic Location for IRF4
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the IRF4 gene 
Entrez Gene cytogenetic band: 6p25-p23 Ensembl cytogenetic band: 6p25.3 HGNC cytogenetic band: 6p25-p23IRF4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06P000336:
(about GC identifiers)
Start:
|
336,760 bp from pter |
End:
|
356,193 bp from pter |
Size:
|
19,434 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000006.10 NT_034880.3
| Proteins for IRF4
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: IRF4_HUMAN, Q15306 (See
protein sequence)Recommended Name: Interferon regulatory factor 4 Size: 451 amino acids; 51772 Da
Subunit: Interacts with SPIB and DEF6
Subcellular location: Nucleus
PDB structures from and Proteopedia :2DLL (3D)
 
Secondary accessions: Q5VUI7 Q99660Alternative splicing: 2 isoforms: Q15306-1 Q15306-2 REFSEQ proteins: NP_002451.2
ENSEMBL proteins: ENSP00000370343
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for IRF4: Assays for IRF4: | Protein
Domains/ Families for IRF4(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q15306
ProtoNet protein and cluster: Q15306 1 Blocks protein family: IPB001346 Interferon regulatory factor
UniProtKB/Swiss-Prot: IRF4_HUMAN, Q15306Similarity: Belongs to the IRF familySimilarity: Contains 1 tryptophan pentad repeat DNA-binding domain | Gene Function for IRF4
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): BC015752
Applied Biosystems Silencer® siRNAs for IRF4
Sigma-Aldrich siRNA for IRF4  Sigma-Aldrich shRNA Panels and shRNA for IRF4  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002460                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002460                                  untagged cDNA clones in CMV expression vector (see all 2): BC015752 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: BC015752
UniProtKB/Swiss-Prot: IRF4_HUMAN, Q15306Function: Transcriptional activator. Binds to the interferon-stimulated response element (ISRE) of the MHC class I promoter. Binds the immunoglobulin lambda light chain enhancer, together with PU.1. Probably plays a role in ISRE-targeted signal transduction mechanisms specific to lymphoid cellsInduction: Not induced by interferonsGenatlas biochemistry entry for IRF4:interferon regulatory factor 4,lymphocyte-specific, controlling the B-cell proliferation and differentiation,protooncogene deregulated in multiple myeloma with translocation t(6;14)(p25;q32) (see MUM1)3 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Irf4):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for IRF4
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for IRF4 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for IRF4 
5/60 Interacting proteins for IRF4 (ENSP000003703433) via UniProtKB, MINT, and/or STRING (see all 60
)About this table
5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9
): About this table
|
Drugs & Compounds for IRF4(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for IRF4
|
Transcripts for IRF4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): BC015752
Sigma-Aldrich siRNA for IRF4  Sigma-Aldrich shRNA Panels and shRNA for IRF4  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002460 REFSEQ mRNAs for IRF4 gene: NM_002460.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002460               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002460                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002460                                  untagged cDNA clones in CMV expression vector (see all 2): BC015752  Additional cDNA sequence: AK130762.1 AK310149.1 BC015752.1 D78261.1 U52682.1 U63738.1 7 DOTS entries: DT.95373806 DT.415498 DT.101954966 DT.101967303 DT.100027176 DT.121369596 DT.121369597 24/202 AceView cDNA sequences (see all 202
):BG230623 AI125911 BM466161 AI224170 BM472499 BP338226 AA377285 BQ213771 BX112230 BX646222 AW204321 BG762018 CD520520 AW407522 BQ221956 BU838100 AW452687 BQ683656 AW448970 AA227826 BG390289 BU147350 AI824002 CD521701
highest scoring ESTs for IRF4:D78261 U52682 AA255768 BC015752 BE151052 BF128693 BM551611 BQ425272 CF137158 CF137957 Unigene Cluster for IRF4: Interferon regulatory factor 4 Hs.401013 [show with all ESTs]Unigene Representative Sequence: U52682
GeneLoc Exon Structure
5/9 Alternative Splicing Database (ASD) splice patterns (SP) for IRF4 (see all 9
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | ^ | 5a | · | 5b | ^ | 6a | · | 6b | · | 6c | · | 6d | ^ | 7 | ^ | 8a | · | 8b | · | 8c | ^ | 9 | ^ | 10 | ^ | 11 | |
| SP1: | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | - |   | |   | - |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | - |   | |   | - |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | - |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | - |   | |   | - |   | - |   | |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for IRF4
1 Ensembl transcript including schematic representation: ENST00000380956
|
Expression for IRF4
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| IRF4 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for IRF4
1 / 2 / 3 10 probe-sets matching IRF4 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.401013
Expression variation in blood from EXPOLDB for IRF4 UniProtKB/Swiss-Prot: IRF4_HUMAN, Q15306Tissue specificity: Lymphoid cells |
Orthologs for IRF4
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for IRF4 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for IRF4
ENSEMBL Gene Tree for IRF4 | Paralogs for IRF4(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for IRF4 gene
- IRF82 IRF92 IRF52 IRF62
|
SNPs/Variants for IRF4(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for IRF4 (up to first 250kb)
|
Disorders & Mutations for IRF4
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 601900 UniProtKB/Swiss-Prot: IRF4_HUMAN, Q15306
A chromosomal aberration involving IRF4 may be a cause of multiple myeloma [MIM:254500]. Translocation t(6;14)(p25;q32) with the IgH locus10/18 Novoseek disease relationships for IRF4 gene (see all 18
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| lymphoma b-cell |
74.75 |
10 |
15710572 (2), 15959530 (2), 17149956 (1), 18987657 (1) (see all 7) |
| leukemia t-cell |
58.04 |
6 |
11749693 (1), 12218129 (1), 15684621 (1), 10714679 (1) |
| lymphoma |
57.20 |
10 |
18417578 (2), 17138822 (1), 19103865 (1), 17517757 (1) (see all 9) |
| plasmacytoma |
49.39 |
3 |
15507667 (1), 18089822 (1) |
| myeloma |
48.59 |
8 |
18568025 (4), 18987657 (1), 18761464 (1) |
| hodgkin disease |
41.69 |
6 |
18410414 (3), 10706878 (1) |
| lymphoma follicular |
41.55 |
3 |
17296585 (2) |
| malt lymphoma |
41.29 |
1 |
15710572 (1) |
| lymphoma non-hodgkins |
37.45 |
1 |
12594241 (1) |
| paraparesis tropical spastic |
35.44 |
1 |
11846984 (1) |
About this table
1 PharmGKB disease relationship for IRF4 geneAbout this table
Human Genome Epidemiology Navigator: IRF4 (5 documents)
|
Medical News for IRF4(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for IRF4 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/150 PubMed articles for IRF4 gene (see all 150
):- Cloning of human lymphocyte-specific interferon regulatory factor (hLSIRF/hIRF4) and mapping of the gene to 6p23-p25. (PubMed id 8921401)1, 2, 3, 4 Grossman A.... Mak T.W. (1996)
- Interferon regulatory factor 4 is involved in Epstein-Barr virus-mediated transformation of human B lymphocytes. (PubMed id 18417578)1, 2, 3 Xu D....Zhang L. (2008)
- Deregulation of MUM1/IRF4 by chromosomal translocation in multiple myeloma. (PubMed id 9326949)1, 3, 4 Iida S.... Dalla-Favera R. (1997)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)3, 4 Mungall A.J.... Beck S. (2003)
- SPI-B activates transcription via a unique proline, serine, and threonine domain and exhibits DNA binding affinity differences from PU.1. (PubMed id 10196196)3, 4 Rao S.... Simon M.C. (1999)
- Possible involvement of interferon regulatory factor 4 (IRF4) in a clinical subtype of adult T-cell leukemia. (PubMed id 11749693)1, 3 Imaizumi Y....Matsuyama T. (2001)
- Regulation of lymphocyte apoptosis by interferon regulatory factor 4 (IRF-4). (PubMed id 12566414)1, 3 Fanzo J.C....Pernis A.B. (2003)
- Modulation of T cell cytokine production by interferon regulatory factor-4. (PubMed id 12374808)1, 3 Hu C.M....Pernis A.B. (2002)
- Regulation of IFN regulatory factor 4 expression in human T cell leukemia virus-I-transformed T cells. (PubMed id 12218129)1, 3 Sharma S....Hiscott J. (2002)
|
Search for IRF4
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing IRF4
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing IRF4
(According to HUGE)
About This Section
| -- |
Specialized Databases showing IRF4(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for IRF4(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for IRF4:

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| Antibodies & Assays for IRF4  (IRF) |
| | Recombinant Proteins (MUM1) | | Antibodies (MUM1) |
| | | Search Tocris compounds for IRF4 |
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Incremental update: 13 Oct 2009
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