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Aliases for IQCJ-SCHIP1-AS1 Gene

Subcategory (RNA class) for IQCJ-SCHIP1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IQCJ-SCHIP1-AS1 Gene

  • IQCJ-SCHIP1 Readthrough Antisense RNA 1 2 3 5
  • IQCJ-SCHIP1 Readthrough Antisense RNA 1 (Non-Protein Coding) 2 3
  • Uaz98 3

External Ids for IQCJ-SCHIP1-AS1 Gene

Previous GeneCards Identifiers for IQCJ-SCHIP1-AS1 Gene

  • GC03M159484

Summaries for IQCJ-SCHIP1-AS1 Gene

GeneCards Summary for IQCJ-SCHIP1-AS1 Gene

IQCJ-SCHIP1-AS1 (IQCJ-SCHIP1 Readthrough Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for IQCJ-SCHIP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IQCJ-SCHIP1-AS1 Gene

Genomics for IQCJ-SCHIP1-AS1 Gene

Regulatory Elements for IQCJ-SCHIP1-AS1 Gene

Enhancers for IQCJ-SCHIP1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H159796 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.9 -29.5 -29507 4 SOX13 JUN ZNF140 ZNF664 HIC1 ZNF121 GATA3 ZBTB48 ATF7 TEAD1 IQCJ-SCHIP1-AS1 IQCJ-SCHIP1 RNU2-31P
GH03H159822 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -55.8 -55778 3 PKNOX1 NFIB SIN3A RFX5 ZNF366 ZNF350 RCOR1 FOS DEK CEBPB IL12A IQCJ-SCHIP1-AS1 LOC101928351 RNU2-31P
GH03H159828 1.5 Ensembl ENCODE dbSUPER 10.3 -61.2 -61249 2 FOXA2 FEZF1 ZNF2 YY1 ZNF121 KLF7 FOS DEK SP3 REST RPL6P8 IFT80 RNU2-31P IL12A SMC4 IQCJ-SCHIP1-AS1 LOC101928351
GH03H159813 1.2 FANTOM5 ENCODE dbSUPER 10.6 -45.8 -45835 1 FOXA2 RFX1 MNT KLF4 ETS1 FOXA1 ZNF217 JUND GATA3 CTBP1 IQCJ-SCHIP1-AS1 RNU2-31P LOC101928351
GH03H159731 0.9 Ensembl ENCODE 11.7 +35.5 35548 3 GFI1B ZKSCAN1 JUND GATA3 ZBTB48 GLIS1 MAFK ZXDB TRIM28 IQCJ-SCHIP1-AS1 LOC100420738
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IQCJ-SCHIP1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for IQCJ-SCHIP1-AS1 Gene

Chromosome:
3
Start:
159,765,382 bp from pter
End:
159,768,612 bp from pter
Size:
3,231 bases
Orientation:
Minus strand

Genomic View for IQCJ-SCHIP1-AS1 Gene

Genes around IQCJ-SCHIP1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IQCJ-SCHIP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IQCJ-SCHIP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IQCJ-SCHIP1-AS1 Gene

Proteins for IQCJ-SCHIP1-AS1 Gene

Post-translational modifications for IQCJ-SCHIP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IQCJ-SCHIP1-AS1 Gene

Domains & Families for IQCJ-SCHIP1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IQCJ-SCHIP1-AS1 Gene

Function for IQCJ-SCHIP1-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for IQCJ-SCHIP1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IQCJ-SCHIP1-AS1 Gene

Localization for IQCJ-SCHIP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IQCJ-SCHIP1-AS1 Gene

Pathways & Interactions for IQCJ-SCHIP1-AS1 Gene

SuperPathways for IQCJ-SCHIP1-AS1 Gene

No Data Available

Interacting Proteins for IQCJ-SCHIP1-AS1 Gene

Gene Ontology (GO) - Biological Process for IQCJ-SCHIP1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IQCJ-SCHIP1-AS1 Gene

Drugs & Compounds for IQCJ-SCHIP1-AS1 Gene

No Compound Related Data Available

Transcripts for IQCJ-SCHIP1-AS1 Gene

mRNA/cDNA for IQCJ-SCHIP1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for IQCJ-SCHIP1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for IQCJ-SCHIP1-AS1 Gene

No ASD Table

Relevant External Links for IQCJ-SCHIP1-AS1 Gene

GeneLoc Exon Structure for
IQCJ-SCHIP1-AS1
ECgene alternative splicing isoforms for
IQCJ-SCHIP1-AS1

Expression for IQCJ-SCHIP1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IQCJ-SCHIP1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IQCJ-SCHIP1-AS1 Gene

This gene is overexpressed in Testis (x18.7) and Brain - Spinal cord (cervical c-1) (x5.3).
genes like me logo Genes that share expression patterns with IQCJ-SCHIP1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IQCJ-SCHIP1-AS1 Gene

Orthologs for IQCJ-SCHIP1-AS1 Gene

Evolution for IQCJ-SCHIP1-AS1 Gene

ENSEMBL:
Gene Tree for IQCJ-SCHIP1-AS1 (if available)
TreeFam:
Gene Tree for IQCJ-SCHIP1-AS1 (if available)

No data available for Orthologs for IQCJ-SCHIP1-AS1 Gene

Paralogs for IQCJ-SCHIP1-AS1 Gene

No data available for Paralogs for IQCJ-SCHIP1-AS1 Gene

Variants for IQCJ-SCHIP1-AS1 Gene

Sequence variations from dbSNP and Humsavar for IQCJ-SCHIP1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000362910 -- 159,770,022(+) TGCCT(A/T)CTAAA intron-variant, upstream-variant-2KB
rs1000672371 -- 159,769,403(+) ATGTC(C/T)AGCCT intron-variant, upstream-variant-2KB
rs1000964889 -- 159,768,846(+) AATAA(A/G)TGCTT intron-variant, upstream-variant-2KB
rs1001333517 -- 159,768,553(+) GGTGG(A/G)ATTTA intron-variant
rs1001348888 -- 159,766,702(+) TGTTT(C/T)TGAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IQCJ-SCHIP1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2726108 CNV deletion 23290073
esv3598373 CNV loss 21293372

Relevant External Links for IQCJ-SCHIP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IQCJ-SCHIP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IQCJ-SCHIP1-AS1 Gene

Disorders for IQCJ-SCHIP1-AS1 Gene

Relevant External Links for IQCJ-SCHIP1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IQCJ-SCHIP1-AS1

No disorders were found for IQCJ-SCHIP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IQCJ-SCHIP1-AS1 Gene

Publications for IQCJ-SCHIP1-AS1 Gene

No publications were found for IQCJ-SCHIP1-AS1 Gene.

Products for IQCJ-SCHIP1-AS1 Gene

Sources for IQCJ-SCHIP1-AS1 Gene

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