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Aliases for IQCJ-SCHIP1-AS1 Gene

Subcategory (RNA class) for IQCJ-SCHIP1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IQCJ-SCHIP1-AS1 Gene

  • IQCJ-SCHIP1 Readthrough Antisense RNA 1 2 3 5
  • IQCJ-SCHIP1 Readthrough Antisense RNA 1 (Non-Protein Coding) 2 3
  • Uaz98 3

External Ids for IQCJ-SCHIP1-AS1 Gene

Previous GeneCards Identifiers for IQCJ-SCHIP1-AS1 Gene

  • GC03M159484

Summaries for IQCJ-SCHIP1-AS1 Gene

GeneCards Summary for IQCJ-SCHIP1-AS1 Gene

IQCJ-SCHIP1-AS1 (IQCJ-SCHIP1 Readthrough Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for IQCJ-SCHIP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IQCJ-SCHIP1-AS1 Gene

Genomics for IQCJ-SCHIP1-AS1 Gene

GeneHancer (GH) Regulatory Elements for IQCJ-SCHIP1-AS1 Gene

Promoters and enhancers for IQCJ-SCHIP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I159768 Enhancer 0.5 dbSUPER 550.8 -0.3 -307 1.2 ZBTB6 CREB1 ATF2 ZBTB17 IQCJ-SCHIP1-AS1 RNU2-31P SCHIP1 IQCJ-SCHIP1
GH03I159796 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.9 -29.5 -29506 4.2 SOX13 TEAD1 ZNF189 JUN ATF2 HIC1 ZNF121 ZSCAN21 ZNF664 GATA3 IQCJ-SCHIP1-AS1 IQCJ-SCHIP1 RNU2-31P LOC101928351 SCHIP1
GH03I159822 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -55.8 -55778 3 PKNOX1 NFIB SIN3A RFX5 ZNF366 ZNF350 RCOR1 FOS DEK CEBPB LOC101928351 IL12A IQCJ-SCHIP1-AS1 RNU2-31P SCHIP1 IQCJ-SCHIP1
GH03I159828 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.3 -61.2 -61249 2.8 FOXA2 FEZF1 ZNF2 YY1 ZNF121 ZNF213 KLF7 FOS ZNF214 DEK IFT80 RNU2-31P IL12A SMC4 IQCJ-SCHIP1-AS1 LOC101928351 SCHIP1 IQCJ-SCHIP1
GH03I159813 Enhancer 1 FANTOM5 ENCODE dbSUPER 10.6 -45.8 -45834 1.6 FOXA2 RFX1 MNT KLF4 GABPA ETS1 FOXA1 ZNF217 CTBP1 GATA3 IQCJ-SCHIP1-AS1 RNU2-31P LOC101928351 SCHIP1 IQCJ-SCHIP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IQCJ-SCHIP1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IQCJ-SCHIP1-AS1 Gene

Genomic Locations for IQCJ-SCHIP1-AS1 Gene
chr3:159,765,382-159,768,612
(GRCh38/hg38)
Size:
3,231 bases
Orientation:
Minus strand
chr3:159,483,176-159,486,401
(GRCh37/hg19)

Genomic View for IQCJ-SCHIP1-AS1 Gene

Genes around IQCJ-SCHIP1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IQCJ-SCHIP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IQCJ-SCHIP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IQCJ-SCHIP1-AS1 Gene

Proteins for IQCJ-SCHIP1-AS1 Gene

Post-translational modifications for IQCJ-SCHIP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IQCJ-SCHIP1-AS1 Gene

Domains & Families for IQCJ-SCHIP1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IQCJ-SCHIP1-AS1 Gene

Function for IQCJ-SCHIP1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IQCJ-SCHIP1-AS1 Gene

Localization for IQCJ-SCHIP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IQCJ-SCHIP1-AS1 Gene

Pathways & Interactions for IQCJ-SCHIP1-AS1 Gene

SuperPathways for IQCJ-SCHIP1-AS1 Gene

No Data Available

Interacting Proteins for IQCJ-SCHIP1-AS1 Gene

Gene Ontology (GO) - Biological Process for IQCJ-SCHIP1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IQCJ-SCHIP1-AS1 Gene

Drugs & Compounds for IQCJ-SCHIP1-AS1 Gene

No Compound Related Data Available

Transcripts for IQCJ-SCHIP1-AS1 Gene

mRNA/cDNA for IQCJ-SCHIP1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for IQCJ-SCHIP1-AS1 Gene

No ASD Table

Relevant External Links for IQCJ-SCHIP1-AS1 Gene

GeneLoc Exon Structure for
IQCJ-SCHIP1-AS1
ECgene alternative splicing isoforms for
IQCJ-SCHIP1-AS1

Expression for IQCJ-SCHIP1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IQCJ-SCHIP1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IQCJ-SCHIP1-AS1 Gene

This gene is overexpressed in Testis (x18.7) and Brain - Spinal cord (cervical c-1) (x5.3).
genes like me logo Genes that share expression patterns with IQCJ-SCHIP1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IQCJ-SCHIP1-AS1 Gene

Orthologs for IQCJ-SCHIP1-AS1 Gene

Evolution for IQCJ-SCHIP1-AS1 Gene

ENSEMBL:
Gene Tree for IQCJ-SCHIP1-AS1 (if available)
TreeFam:
Gene Tree for IQCJ-SCHIP1-AS1 (if available)

No data available for Orthologs for IQCJ-SCHIP1-AS1 Gene

Paralogs for IQCJ-SCHIP1-AS1 Gene

No data available for Paralogs for IQCJ-SCHIP1-AS1 Gene

Variants for IQCJ-SCHIP1-AS1 Gene

Sequence variations from dbSNP and Humsavar for IQCJ-SCHIP1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000362910 -- 159,770,022(-) T/A upstream_transcript_variant
rs1000672371 -- 159,769,403(-) T/C upstream_transcript_variant
rs1000964889 -- 159,768,846(-) A/G upstream_transcript_variant
rs1001333517 -- 159,768,553(-) G/A intron_variant
rs1001348888 -- 159,766,702(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for IQCJ-SCHIP1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2726108 CNV deletion 23290073
esv3598373 CNV loss 21293372

Additional Variant Information for IQCJ-SCHIP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IQCJ-SCHIP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IQCJ-SCHIP1-AS1 Gene

Disorders for IQCJ-SCHIP1-AS1 Gene

Additional Disease Information for IQCJ-SCHIP1-AS1

No disorders were found for IQCJ-SCHIP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IQCJ-SCHIP1-AS1 Gene

Publications for IQCJ-SCHIP1-AS1 Gene

No publications were found for IQCJ-SCHIP1-AS1 Gene.

Products for IQCJ-SCHIP1-AS1 Gene

Sources for IQCJ-SCHIP1-AS1 Gene

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