IQCJ-SCHIP1 Gene
protein-coding GIFtS: 26
GCID: GC03P158681
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IQCJ-SCHIP1 readthrough
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Aliases
for IQCJ-SCHIP1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| IQCJ-SCHIP1 Readthrough1 2 | | IQ Motif Containing J-Schwannomin Interacting Protein 1 Fusion Protein2 | | IQ Motif Containing J-Schwannomin Interacting Protein 1 Read-Through Transcript2 |
Export aliases for IQCJ-SCHIP1 gene to outside databasesPrevious GC identifer: GC03U901706 |
Summaries
for IQCJ-SCHIP1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for IQCJ-SCHIP1:
This locus represents naturally occurring read-through transcription from the neighboring IQ motif containing J (IQCJ)and schwannomin interacting protein 1 (SCHIP1) genes. Alternative splicing results in multiple transcript variantsthat are composed of in-frame exons from each individual gene. The resulting fusion products are thought to becomponents of the multimolecular complexes of axon initial segments and nodes of Ranvier, and they may play a role incalcium-mediated responses. (provided by RefSeq, Oct 2010)
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Genomic Views
for IQCJ-SCHIP1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for IQCJ-SCHIP1
Other transcription factors
Search SABiosciences Chromatin IP Primers for IQCJ-SCHIP1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IQCJ-SCHIP1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Ensembl cytogenetic band: 3q25.32 HGNC cytogenetic band: 3q25.33IQCJ-SCHIP1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03P158681: view genomic region
(about GC identifiers)
Start:
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158,680,024 bp from pter |
End:
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159,615,155 bp from pter |
Size:
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935,132 bases |
Orientation:
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plus strand |
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Proteins
for IQCJ-SCHIP1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/TrEMBL: C9J366 (See
protein sequence)Recommended Name: Protein IQCJ-SCHIP1 Size: 451 amino acids; 49371 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: C9J615 (See
protein sequence) Recommended Name: Protein IQCJ-SCHIP1 Size: 143 amino acids; 15206 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: C9J630 (See
protein sequence) Recommended Name: Protein IQCJ-SCHIP1 Size: 168 amino acids; 17920 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: C9JMW4 (See
protein sequence) Recommended Name: Protein IQCJ-SCHIP1 Size: 91 amino acids; 10028 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: C9JVF1 (See
protein sequence) Recommended Name: Protein IQCJ-SCHIP1 Size: 153 amino acids; 16847 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: C9JXR1 (See
protein sequence) Recommended Name: Protein IQCJ-SCHIP1 Size: 158 amino acids; 17635 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: C9K0A8 (See
protein sequence) Recommended Name: Protein IQCJ-SCHIP1 Size: 101 amino acids; 11606 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: H7C4Z1 (See
protein sequence) Recommended Name: Protein IQCJ-SCHIP1 Size: 100 amino acids; 11346 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataIQCJ-SCHIP1 Protein expression data from MOPED and PaxDb: --
REFSEQ proteins (2 alternative transcripts):
NP_001184042.1 NP_001184043.1
ENSEMBL proteins: ENSP00000419668 ENSP00000418692 ENSP00000420182 ENSP00000419349 ENSP00000419125 ENSP00000420478 ENSP00000337239 ENSP00000400942 ENSP00000436076 ENSP00000418452 ENSP00000417305 ENSP00000417080 ENSP00000418570
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
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| GO:0005737 | cytoplasm |
-- | -- |
IQCJ-SCHIP1 for ontologies About GeneDecksing
IQCJ-SCHIP1 Antibody Products:
Assay Products for IQCJ-SCHIP1: |
Protein
Domains /
Families
for IQCJ-SCHIP1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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IQCJ-SCHIP1 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry C9J366Graphical View of Domain Structure for InterPro Entry C9J615Graphical View of Domain Structure for InterPro Entry C9J630Graphical View of Domain Structure for InterPro Entry C9JMW4Graphical View of Domain Structure for InterPro Entry C9JVF1Graphical View of Domain Structure for InterPro Entry C9JXR1Graphical View of Domain Structure for InterPro Entry C9K0A8Graphical View of Domain Structure for InterPro Entry H7C4Z1ProtoNet protein and cluster: C9J366 |
Function
for IQCJ-SCHIP1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IQCJ-SCHIP1 |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005515 | protein binding |
-- | -- | | GO:0042802 | identical protein binding |
-- | -- |
IQCJ-SCHIP1 for ontologies About GeneDecksing
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Pathways & Interactions
for IQCJ-SCHIP1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for IQCJ-SCHIP1
Gene Ontology (GO): 5/13 biological process terms (GO ID links to tree view) (see all 13): About this table
IQCJ-SCHIP1 for ontologies About GeneDecksing
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Drugs & Compounds
for IQCJ-SCHIP1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for IQCJ-SCHIP1
Search CenterWatch for drugs/clinical trials and news about IQCJ-SCHIP1 
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Transcripts
for IQCJ-SCHIP1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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REFSEQ mRNAs for IQCJ-SCHIP1 gene (2 alternative transcripts): NM_001197113.1 NM_001197114.1 14 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000467442 ENST00000471575 ENST00000476809 ENST00000485419(uc003fcq.2 uc003fcr.2)
ENST00000483486 ENST00000481715 ENST00000488898 ENST00000337808(uc003fcs.2 uc003fct.2 uc021xgm.1)
ENST00000412423 ENST00000527095 ENST00000467377 ENST00000460298 ENST00000472451
ENST00000473061
GeneLoc Exon Structure
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Expression
for IQCJ-SCHIP1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| IQCJ-SCHIP1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
Genevestigator expression for IQCJ-SCHIP1
SABiosciences Custom PCR Arrays for IQCJ-SCHIP1
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat IQCJ-SCHIP1 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IQCJ-SCHIP1 | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IQCJ-SCHIP1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IQCJ-SCHIP1 |
Orthologs
for IQCJ-SCHIP1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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This gene was present in the common ancestor of animals.
Orthologs for IQCJ-SCHIP1 gene from 4/15 species (see all 15) About this table
ENSEMBL Gene Tree for IQCJ-SCHIP1 (if available)
TreeFam Gene Tree for IQCJ-SCHIP1 (if available) |
Paralogs
for IQCJ-SCHIP1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for IQCJ-SCHIP1 gene
- SCHIP12
2 SIMAP similar genes for IQCJ-SCHIP1 using alignment to 8 protein entries: C9J366_HUMAN (see all proteins):SCHIP1 IQCJ
IQCJ-SCHIP1 for paralogs About GeneDecksing
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Genomic Variants
for IQCJ-SCHIP1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 3 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for IQCJ-SCHIP1 (158680024 - 158930024 bp, first 250kb of IQCJ-SCHIP1)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for IQCJ-SCHIP1: -- | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for IQCJ-SCHIP1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for IQCJ-SCHIP1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for IQCJ-SCHIP1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with IQCJ-SCHIP1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PubMed id 20967262)1 Prakash T....Taylor T.D. (2010)
- Genome-wide association studies in an isolated founde r population from the Pacific Island of Kosrae. (PubMed id 19197348)1 Lowe J.K....Friedman J.M. (2009)
- Schwannomin-interacting protein-1 isoform IQCJ-SCHIP- 1 is a late component of nodes of Ranvier and axon initial segments. (PubMed id 18550753)1 Martin P.M....Goutebroze L. (2008)
- IQCJ-SCHIP1, a novel fusion transcript encoding a calmodulin-binding IQ motif protein. (PubMed id 17045569)1 Kwasnicka-Crawford D.A....Scherer S.W. (2006)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
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External Searches for IQCJ-SCHIP1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing IQCJ-SCHIP1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing IQCJ-SCHIP1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing IQCJ-SCHIP1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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About This Section
| Patent Information for IQCJ-SCHIP1 gene:
Search GeneIP for patents involving IQCJ-SCHIP1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for IQCJ-SCHIP1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat IQCJ-SCHIP1 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing IQCJ-SCHIP1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IQCJ-SCHIP1 | | | Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat IQCJ-SCHIP1 | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IQCJ-SCHIP1 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IQCJ-SCHIP1 |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IQCJ-SCHIP1 |
|  |  |  | | | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat IQCJ-SCHIP1 |
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