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Aliases for IQCJ-SCHIP1 Gene

Aliases for IQCJ-SCHIP1 Gene

  • IQCJ-SCHIP1 Readthrough 2 3

External Ids for IQCJ-SCHIP1 Gene

Summaries for IQCJ-SCHIP1 Gene

Entrez Gene Summary for IQCJ-SCHIP1 Gene

  • This locus represents naturally occurring read-through transcription from the neighboring IQ motif containing J (IQCJ) and schwannomin interacting protein 1 (SCHIP1) genes. Alternative splicing results in multiple transcript variants that are composed of in-frame exons from each individual gene. The resulting fusion products are thought to be components of the multimolecular complexes of axon initial segments and nodes of Ranvier, and they may play a role in calcium-mediated responses. [provided by RefSeq, Oct 2010]

GeneCards Summary for IQCJ-SCHIP1 Gene

IQCJ-SCHIP1 (IQCJ-SCHIP1 Readthrough) is a Protein Coding gene. An important paralog of this gene is SCHIP1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IQCJ-SCHIP1 Gene

Genomics for IQCJ-SCHIP1 Gene

Genomic Location for IQCJ-SCHIP1 Gene

Start:
158,962,235 bp from pter
End:
159,897,366 bp from pter
Size:
935,132 bases
Orientation:
Plus strand

Genomic View for IQCJ-SCHIP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for IQCJ-SCHIP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IQCJ-SCHIP1 Gene

No data available for Regulatory Elements for IQCJ-SCHIP1 Gene

Proteins for IQCJ-SCHIP1 Gene

  • Protein details for IQCJ-SCHIP1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    C9J366-C9J366
    Recommended name:
    Protein IQCJ-SCHIP1
    Protein Accession:
    C9J366
    Secondary Accessions:

    Protein attributes for IQCJ-SCHIP1 Gene

    Size:
    451 amino acids
    Molecular mass:
    49371 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IQCJ-SCHIP1 Gene

Proteomics data for IQCJ-SCHIP1 Gene at MOPED

Post-translational modifications for IQCJ-SCHIP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IQCJ-SCHIP1 Gene

Domains for IQCJ-SCHIP1 Gene

Protein Domains for IQCJ-SCHIP1 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with IQCJ-SCHIP1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for IQCJ-SCHIP1 Gene

Function for IQCJ-SCHIP1 Gene

Gene Ontology (GO) - Molecular Function for IQCJ-SCHIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0042802 identical protein binding --
genes like me logo Genes that share ontologies with IQCJ-SCHIP1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for IQCJ-SCHIP1 Gene

Localization for IQCJ-SCHIP1 Gene

Gene Ontology (GO) - Cellular Components for IQCJ-SCHIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm --
genes like me logo Genes that share ontologies with IQCJ-SCHIP1: view

Pathways for IQCJ-SCHIP1 Gene

SuperPathways for IQCJ-SCHIP1 Gene

No Data Available

Interacting Proteins for IQCJ-SCHIP1 Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000420182%0d%0a9606.ENSP00000306245%0d%0a9606.ENSP00000404860%0d%0a9606.ENSP00000344666%0d%0a
Selected Interacting proteins: ENSP00000420182 for IQCJ-SCHIP1 Gene via STRING

Gene Ontology (GO) - Biological Process for IQCJ-SCHIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process --
genes like me logo Genes that share ontologies with IQCJ-SCHIP1: view

No data available for Pathways by source for IQCJ-SCHIP1 Gene

Transcripts for IQCJ-SCHIP1 Gene

mRNA/cDNA for IQCJ-SCHIP1 Gene

(2) REFSEQ mRNAs :
(14) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IQCJ-SCHIP1 Gene

No ASD Table

Relevant External Links for IQCJ-SCHIP1 Gene

GeneLoc Exon Structure for
IQCJ-SCHIP1
ECgene alternative splicing isoforms for
IQCJ-SCHIP1

Expression for IQCJ-SCHIP1 Gene

mRNA expression in normal human tissues for IQCJ-SCHIP1 Gene

mRNA differential expression in normal tissues according to GTEx for IQCJ-SCHIP1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (4.3).
genes like me logo Genes that share expressions with IQCJ-SCHIP1: view

Orthologs for IQCJ-SCHIP1 Gene

This gene was present in the common ancestor of animals.

Orthologs for IQCJ-SCHIP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCHIP1 36
  • 98.73 (n)
  • 99.16 (a)
dog
(Canis familiaris)
Mammalia IQCJ-SCHIP1 37
  • 92 (a)
OneToOne
SCHIP1 36
  • 91.77 (n)
  • 93.07 (a)
mouse
(Mus musculus)
Mammalia Gm21949 36
  • 89.39 (n)
  • 92.13 (a)
Gm21949 16
Schip1 37
  • 90 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia IQCJ-SCHIP1 37
  • 93 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Schip1 36
  • 89.94 (n)
  • 92.68 (a)
chicken
(Gallus gallus)
Aves SCHIP1 36
  • 74.79 (n)
  • 78.81 (a)
lizard
(Anolis carolinensis)
Reptilia IQCJ-SCHIP1 37
  • 69 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii schip1 36
  • 78.62 (n)
  • 93.67 (a)
schip1 37
  • 69 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG5375 37
  • 14 (a)
OneToMany
Species with no ortholog for IQCJ-SCHIP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for IQCJ-SCHIP1 Gene

ENSEMBL:
Gene Tree for IQCJ-SCHIP1 (if available)
TreeFam:
Gene Tree for IQCJ-SCHIP1 (if available)

Paralogs for IQCJ-SCHIP1 Gene

Paralogs for IQCJ-SCHIP1 Gene

Selected SIMAP similar genes for IQCJ-SCHIP1 Gene using alignment to 8 proteins:

genes like me logo Genes that share paralogs with IQCJ-SCHIP1: view

Variants for IQCJ-SCHIP1 Gene

Sequence variations from dbSNP and Humsavar for IQCJ-SCHIP1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs2595240 -- 159,270,805(+) GTTTA(C/T)ATAAA intron-variant
rs2621286 -- 159,269,746(-) AATCA(C/T)GGAGA intron-variant
rs9283610 -- 159,269,969(+) ATTAC(A/G)TTTCT intron-variant
rs9827048 -- 159,267,284(+) AAAAA(C/T)TGTGG intron-variant
rs9848338 -- 159,271,085(+) TGCAG(A/G)GAGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IQCJ-SCHIP1 Gene

Variant ID Type Subtype PubMed ID
nsv877692 CNV Loss 21882294
nsv470971 CNV Gain 18288195
nsv877694 CNV Gain 21882294
nsv437890 CNV Loss 16468122
esv23950 CNV Loss 19812545
esv2421756 CNV Deletion 20811451
esv2726104 CNV Deletion 23290073
esv2656480 CNV Deletion 23128226
esv24169 CNV Loss 19812545
esv2516721 CNV Insertion 19546169
esv2659056 CNV Deletion 23128226
esv259484 OTHER Complex 20981092
esv259680 OTHER Complex 20981092
esv5498 CNV Gain 19470904
nsv877695 CNV Gain 21882294
nsv4082 CNV Insertion 18451855
esv2678454 CNV Deletion 23128226
dgv5281n71 CNV Gain 21882294
esv2644833 CNV Deletion 19546169
nsv519199 CNV Loss 19592680
nsv511197 CNV Loss 21212237
nsv513091 CNV Loss 21212237
nsv820265 CNV Gain 19587683
dgv834n67 CNV Loss 20364138
nsv821438 CNV Deletion 20802225
esv4370 CNV Deletion 18987735
esv2726105 CNV Deletion 23290073
esv22799 CNV Gain 19812545
esv992343 CNV Deletion 20482838
esv2657975 CNV Deletion 23128226
nsv522248 CNV Loss 19592680
esv2138340 CNV Deletion 18987734
nsv4083 CNV Insertion 18451855
esv2560522 CNV Deletion 19546169
esv1917039 CNV Deletion 18987734
esv2664613 CNV Deletion 23128226
esv993836 CNV Deletion 20482838
esv2726107 CNV Deletion 23290073
esv1616680 CNV Deletion 17803354
esv2669077 CNV Deletion 23128226
esv24925 CNV Loss 19812545
nsv818181 CNV Loss 17921354
esv2726108 CNV Deletion 23290073
nsv4084 CNV Loss 18451855
esv2674821 CNV Deletion 23128226
nsv4085 CNV Insertion 18451855
nsv877698 CNV Gain 21882294
esv23556 CNV Loss 19812545
esv259860 OTHER Complex 20981092
nsv829769 CNV Gain 17160897
nsv4086 CNV Loss 18451855
nsv4087 CNV Insertion 18451855

Relevant External Links for IQCJ-SCHIP1 Gene

HapMap Linkage Disequilibrium report
IQCJ-SCHIP1

Disorders for IQCJ-SCHIP1 Gene

No disorders were found for IQCJ-SCHIP1 Gene.

No data available for UniProtKB/Swiss-Prot for IQCJ-SCHIP1 Gene

Publications for IQCJ-SCHIP1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  2. IQCJ-SCHIP1, a novel fusion transcript encoding a calmodulin-binding IQ motif protein. (PMID: 17045569) Kwasnicka-Crawford D.A. … Scherer S.W. (Biochem. Biophys. Res. Commun. 2006) 3
  3. Schwannomin-interacting protein-1 isoform IQCJ-SCHIP-1 is a late component of nodes of Ranvier and axon initial segments. (PMID: 18550753) Martin P.M. … Goutebroze L. (J. Neurosci. 2008) 3
  4. Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae. (PMID: 19197348) Lowe J.K. … Friedman J.M. (PLoS Genet. 2009) 3
  5. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3

Products for IQCJ-SCHIP1 Gene

Sources for IQCJ-SCHIP1 Gene

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