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Aliases for IQCH-AS1 Gene

Subcategory (RNA class) for IQCH-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IQCH-AS1 Gene

  • IQCH Antisense RNA 1 2 3 5
  • IQCH Antisense RNA 1 (Non-Protein Coding) 2

External Ids for IQCH-AS1 Gene

Previous GeneCards Identifiers for IQCH-AS1 Gene

  • GC15M067698

Summaries for IQCH-AS1 Gene

GeneCards Summary for IQCH-AS1 Gene

IQCH-AS1 (IQCH Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IQCH-AS1 Gene

Genomics for IQCH-AS1 Gene

Regulatory Elements for IQCH-AS1 Gene

Enhancers for IQCH-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F067540 1 ENCODE 31.5 -20.6 -20646 3.6 HDGF PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 IQCH-AS1 MAP2K5 SKOR1 PIAS1 LOC105370872 ENSG00000270964
GH15F067548 1.2 Ensembl ENCODE 31 -26.8 -26758 1.2 HDGF ARNT CREB3L1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 SLC30A9 IQCH-AS1 C15orf61 SKOR1 LOC101929076 RNU6-1 MAP2K5 GC15P067716
GH15F068275 0.2 ENCODE 28.5 -757.2 -757224 8.1 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF263 SP3 NFYC LOC105370872 IQCH-AS1 PIAS1 ENSG00000259410 ENSG00000259265 SKOR1 GC15M068298
GH15F067520 0.5 ENCODE 25.2 +0.1 88 3.1 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 IQCH-AS1 MAP2K5 C15orf61
GH15F067510 0.4 ENCODE 24.8 +10.8 10797 1.2 ZNF263 CTCF HDAC1 ZNF362 MTA2 BHLHE40 ZNF384 TFDP1 JUND GATA2 IQCH-AS1 MAP2K5 GC15P067906 C15orf61
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around IQCH-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for IQCH-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000410172 44 3201 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2

Genomic Location for IQCH-AS1 Gene

Chromosome:
15
Start:
67,403,611 bp from pter
End:
67,521,844 bp from pter
Size:
118,234 bases
Orientation:
Minus strand

Genomic View for IQCH-AS1 Gene

Genes around IQCH-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IQCH-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IQCH-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IQCH-AS1 Gene

Proteins for IQCH-AS1 Gene

Post-translational modifications for IQCH-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IQCH-AS1 Gene

Domains & Families for IQCH-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IQCH-AS1 Gene

Function for IQCH-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IQCH-AS1 Gene

Localization for IQCH-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for IQCH-AS1 Gene

Pathways & Interactions for IQCH-AS1 Gene

SuperPathways for IQCH-AS1 Gene

No Data Available

Interacting Proteins for IQCH-AS1 Gene

Gene Ontology (GO) - Biological Process for IQCH-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IQCH-AS1 Gene

Transcripts for IQCH-AS1 Gene

mRNA/cDNA for IQCH-AS1 Gene

(7) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IQCH-AS1 Gene

IQCH antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IQCH-AS1 Gene

No ASD Table

Relevant External Links for IQCH-AS1 Gene

GeneLoc Exon Structure for
IQCH-AS1
ECgene alternative splicing isoforms for
IQCH-AS1

Expression for IQCH-AS1 Gene

mRNA expression in normal human tissues for IQCH-AS1 Gene

SOURCE GeneReport for Unigene cluster for IQCH-AS1 Gene:

Hs.656245
genes like me logo Genes that share expression patterns with IQCH-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for IQCH-AS1 Gene

Orthologs for IQCH-AS1 Gene

Evolution for IQCH-AS1 Gene

ENSEMBL:
Gene Tree for IQCH-AS1 (if available)
TreeFam:
Gene Tree for IQCH-AS1 (if available)

No data available for Orthologs for IQCH-AS1 Gene

Paralogs for IQCH-AS1 Gene

No data available for Paralogs for IQCH-AS1 Gene

Variants for IQCH-AS1 Gene

Sequence variations from dbSNP and Humsavar for IQCH-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs10468041 -- 67,480,865(+) ATTAG(G/T)CATTG intron-variant
rs10468042 -- 67,480,895(+) TATTA(C/T)ACAAA intron-variant
rs10518723 -- 67,431,276(+) CTCTA(C/T)ATGAA intron-variant
rs10543291 -- 67,506,561(+) GAAAT(-/TAT)ATTCA intron-variant
rs10560261 -- 67,423,853(+) CATCT(-/A)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IQCH-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3337306 CNV insertion 20981092
esv3636789 CNV loss 21293372
nsv1129568 CNV tandem duplication 24896259
nsv569799 CNV loss 21841781
nsv827373 CNV loss 20364138

Relevant External Links for IQCH-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IQCH-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IQCH-AS1 Gene

Disorders for IQCH-AS1 Gene

Relevant External Links for IQCH-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IQCH-AS1

No disorders were found for IQCH-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IQCH-AS1 Gene

Publications for IQCH-AS1 Gene

  1. Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies. (PMID: 21102462) Elks C.E. … Murray A. (Nat. Genet. 2010) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for IQCH-AS1 Gene

Sources for IQCH-AS1 Gene

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