Free for academic non-profit institutions. Other users need a Commercial license

Aliases for IQCH-AS1 Gene

Subcategory (RNA class) for IQCH-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IQCH-AS1 Gene

  • IQCH Antisense RNA 1 2 3 5
  • IQCH Antisense RNA 1 (Non-Protein Coding) 2

External Ids for IQCH-AS1 Gene

Previous GeneCards Identifiers for IQCH-AS1 Gene

  • GC15M067698

Summaries for IQCH-AS1 Gene

GeneCards Summary for IQCH-AS1 Gene

IQCH-AS1 (IQCH Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for IQCH-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IQCH-AS1 Gene

Genomics for IQCH-AS1 Gene

GeneHancer (GH) Regulatory Elements for IQCH-AS1 Gene

Promoters and enhancers for IQCH-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I067520 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 575.2 +0.1 87 3 HDGF PKNOX1 CLOCK SMAD1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 IQCH-AS1 C15orf61 MAP2K5
GH15I068275 Promoter/Enhancer 2.6 EPDnew Ensembl ENCODE dbSUPER 28.9 -757.6 -757567 8.8 ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 SP3 ENSG00000260657 FEM1B SKOR1 IQCH-AS1 PIAS1 CORO2B MAP2K5 SPESP1 NOX5 GC15M068298
GH15I068053 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE 29.7 -533.2 -533215 3.6 HDGF PKNOX1 SMAD1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 PIAS1 IQCH-AS1 ENSG00000260657 CLN6 LOC105370871
GH15I067540 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 23 -20.6 -20645 3.6 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 ZNF207 MAP2K5 ENSG00000270964 IQCH-AS1 SKOR1 PIAS1 ENSG00000260657
GH15I067037 Enhancer 1.4 Ensembl ENCODE dbSUPER 28.4 +480.1 480066 7.6 ARID4B SIN3A ZNF2 ZNF207 FOS DEK ZC3H11A ZNF662 REST ZNF592 ENSG00000260773 IQCH-AS1 TIPIN SKOR1 SMAD3 RPL35AP32 ZWILCH SNAPC5 SNORD16 MAP2K5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IQCH-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IQCH-AS1 Gene

Genomic Locations for IQCH-AS1 Gene
chr15:67,403,611-67,521,844
(GRCh38/hg38)
Size:
118,234 bases
Orientation:
Minus strand
chr15:67,695,949-67,814,182
(GRCh37/hg19)

Genomic View for IQCH-AS1 Gene

Genes around IQCH-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IQCH-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IQCH-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IQCH-AS1 Gene

Proteins for IQCH-AS1 Gene

Post-translational modifications for IQCH-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IQCH-AS1 Gene

Domains & Families for IQCH-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IQCH-AS1 Gene

Function for IQCH-AS1 Gene

Phenotypes From GWAS Catalog for IQCH-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IQCH-AS1 Gene

Localization for IQCH-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IQCH-AS1 Gene

Pathways & Interactions for IQCH-AS1 Gene

SuperPathways for IQCH-AS1 Gene

No Data Available

Interacting Proteins for IQCH-AS1 Gene

Gene Ontology (GO) - Biological Process for IQCH-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IQCH-AS1 Gene

Drugs & Compounds for IQCH-AS1 Gene

No Compound Related Data Available

Transcripts for IQCH-AS1 Gene

mRNA/cDNA for IQCH-AS1 Gene

(7) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IQCH-AS1 Gene

IQCH antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IQCH-AS1 Gene

No ASD Table

Relevant External Links for IQCH-AS1 Gene

GeneLoc Exon Structure for
IQCH-AS1
ECgene alternative splicing isoforms for
IQCH-AS1

Expression for IQCH-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IQCH-AS1 Gene

SOURCE GeneReport for Unigene cluster for IQCH-AS1 Gene:

Hs.656245
genes like me logo Genes that share expression patterns with IQCH-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IQCH-AS1 Gene

Orthologs for IQCH-AS1 Gene

Evolution for IQCH-AS1 Gene

ENSEMBL:
Gene Tree for IQCH-AS1 (if available)
TreeFam:
Gene Tree for IQCH-AS1 (if available)

No data available for Orthologs for IQCH-AS1 Gene

Paralogs for IQCH-AS1 Gene

No data available for Paralogs for IQCH-AS1 Gene

Variants for IQCH-AS1 Gene

Sequence variations from dbSNP and Humsavar for IQCH-AS1 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000031142 -- 67,436,569(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000055887 -- 67,485,419(-) A/G genic_downstream_transcript_variant, intron_variant
rs1000102937 -- 67,500,119(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000107719 -- 67,446,795(-) A/T genic_downstream_transcript_variant, intron_variant
rs1000115106 -- 67,482,779(-) C/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for IQCH-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3337306 CNV insertion 20981092
esv3636789 CNV loss 21293372
nsv1129568 CNV tandem duplication 24896259
nsv569799 CNV loss 21841781
nsv827373 CNV loss 20364138

Additional Variant Information for IQCH-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IQCH-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IQCH-AS1 Gene

Disorders for IQCH-AS1 Gene

Additional Disease Information for IQCH-AS1

No disorders were found for IQCH-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IQCH-AS1 Gene

Publications for IQCH-AS1 Gene

  1. Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies. (PMID: 21102462) Elks CE … Murray A (Nature genetics 2010) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for IQCH-AS1 Gene

Sources for IQCH-AS1 Gene

Content
Loading form....