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Aliases for IQCF6 Gene

Aliases for IQCF6 Gene

  • IQ Motif Containing F6 2 3

External Ids for IQCF6 Gene

Summaries for IQCF6 Gene

GeneCards Summary for IQCF6 Gene

IQCF6 (IQ Motif Containing F6) is a Protein Coding gene. An important paralog of this gene is IQCF5.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IQCF6 Gene

Genomics for IQCF6 Gene

Regulatory Elements for IQCF6 Gene

Genomic Location for IQCF6 Gene

Start:
51,778,561 bp from pter
End:
51,779,240 bp from pter
Size:
680 bases
Orientation:
Minus strand

Genomic View for IQCF6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for IQCF6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IQCF6 Gene

Proteins for IQCF6 Gene

  • Protein details for IQCF6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MYZ5-IQCF6_HUMAN
    Recommended name:
    IQ domain-containing protein F6
    Protein Accession:
    A8MYZ5
    Secondary Accessions:

    Protein attributes for IQCF6 Gene

    Size:
    107 amino acids
    Molecular mass:
    13059 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IQCF6 Gene

Proteomics data for IQCF6 Gene at MOPED

Post-translational modifications for IQCF6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for IQCF6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for IQCF6 Gene

Domains for IQCF6 Gene

Protein Domains for IQCF6 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for IQCF6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A8MYZ5

UniProtKB/Swiss-Prot:

IQCF6_HUMAN :
  • A8MYZ5
Domain:
  • Contains 1 IQ domain.
genes like me logo Genes that share domains with IQCF6: view

No data available for Gene Families for IQCF6 Gene

Function for IQCF6 Gene

Gene Ontology (GO) - Molecular Function for IQCF6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with IQCF6: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for IQCF6 Gene

Localization for IQCF6 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for IQCF6 Gene COMPARTMENTS Subcellular localization image for IQCF6 gene
Compartment Confidence
cytosol 2
mitochondrion 2
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for IQCF6 Gene

Pathways for IQCF6 Gene

SuperPathways for IQCF6 Gene

No Data Available

Interacting Proteins for IQCF6 Gene

Gene Ontology (GO) - Biological Process for IQCF6 Gene

None

No data available for Pathways by source for IQCF6 Gene

Transcripts for IQCF6 Gene

mRNA/cDNA for IQCF6 Gene

(6) Selected AceView cDNA sequences:
(3) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IQCF6 Gene

IQ motif containing F6:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for IQCF6

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for IQCF6

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for IQCF6 Gene

No ASD Table

Relevant External Links for IQCF6 Gene

GeneLoc Exon Structure for
IQCF6
ECgene alternative splicing isoforms for
IQCF6

Expression for IQCF6 Gene

mRNA expression in normal human tissues for IQCF6 Gene

mRNA differential expression in normal tissues according to GTEx for IQCF6 Gene

This gene is overexpressed in Testis (51.7).

SOURCE GeneReport for Unigene cluster for IQCF6 Gene Hs.444316

genes like me logo Genes that share expressions with IQCF6: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for IQCF6 Gene

Orthologs for IQCF6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for IQCF6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia IQCF6 35
  • 98.75 (n)
  • 97.2 (a)
IQCF6 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia IQCF6 35
  • 95.02 (n)
  • 98.13 (a)
IQCF6 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia IQCF6 35
  • 95.28 (n)
  • 95.28 (a)
IQCF6 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Iqcf6 35
  • 86.92 (n)
  • 82.24 (a)
Iqcf6 16
Iqcf6 36
  • 56 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 46 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Iqcf6 35
  • 83.49 (n)
  • 81.31 (a)
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 21 (a)
OneToMany
Species with no ortholog for IQCF6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IQCF6 Gene

ENSEMBL:
Gene Tree for IQCF6 (if available)
TreeFam:
Gene Tree for IQCF6 (if available)

Paralogs for IQCF6 Gene

Paralogs for IQCF6 Gene

Selected SIMAP similar genes for IQCF6 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with IQCF6: view

Variants for IQCF6 Gene

Sequence variations from dbSNP and Humsavar for IQCF6 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs11130296 -- 51,778,936(+) ACGTC(C/T)GGCGC missense, reference
rs12630097 -- 51,780,782(+) cttaa(A/T)aaatg upstream-variant-2KB
rs35586812 -- 51,778,938(+) TCTGG(-/G)CGCAC reference, frameshift-variant
rs60093028 -- 51,778,675(+) CCTCA(C/T)AGTGG reference, missense
rs71297376 -- 51,778,623(+) GCGCC(C/T)TAGGT synonymous-codon, reference

Structural Variations from Database of Genomic Variants (DGV) for IQCF6 Gene

Variant ID Type Subtype PubMed ID
nsv508921 CNV Insertion 20534489
nsv520211 CNV Gain 19592680

Relevant External Links for IQCF6 Gene

HapMap Linkage Disequilibrium report
IQCF6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IQCF6 Gene

Disorders for IQCF6 Gene

No disorders were found for IQCF6 Gene.

No data available for UniProtKB/Swiss-Prot for IQCF6 Gene

Publications for IQCF6 Gene

  1. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4

Products for IQCF6 Gene

Sources for IQCF6 Gene

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