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Aliases for IQCF4 Gene

Aliases for IQCF4 Gene

  • IQ Motif Containing F5 Pseudogene 3 5

External Ids for IQCF4 Gene

Summaries for IQCF4 Gene

GeneCards Summary for IQCF4 Gene

IQCF4 (IQ Motif Containing F5 Pseudogene) is a Pseudogene.

Additional gene information for IQCF4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IQCF4 Gene

Genomics for IQCF4 Gene

GeneHancer (GH) Regulatory Elements for IQCF4 Gene

Promoters and enhancers for IQCF4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I051903 Promoter 0.6 EPDnew 11.1 +85.8 85770 0.1 CREB1 IQCF1 IQCF5 IQCF5-AS1 RN7SL504P IQCF3 IQCF4 GPR62 PCBP4 RRP9
GH03I051902 Enhancer 0.6 ENCODE 11.1 +85.0 84957 0.2 ZNF639 KLF1 SP3 INSM2 ZNF223 KLF17 TSHZ1 JUND ZNF629 FOS IQCF1 IQCF5 IQCF5-AS1 RN7SL504P IQCF3 IQCF4 GPR62 PCBP4 IQCF2
GH03I051861 Promoter 0.5 EPDnew 11 +44.0 43993 0.1 IQCF2 IQCF3 IQCF4 IQCF6 GPR62 PCBP4 GC03P051793
GH03I051794 Enhancer 0.2 ENCODE 11.3 -23.2 -23233 0.2 GC03P051793 IQCF3 IQCF4 IQCF5 ABHD14A-ACY1 ABHD14B PCBP4 ABHD14A LOC105377087
GH03I051857 Enhancer 0.2 Ensembl 11.1 +40.0 39998 0.4 IQCF3 IQCF4 IQCF5-AS1 IQCF2 GC03P051793
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IQCF4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IQCF4 Gene

Genomic Locations for IQCF4 Gene
chr3:51,817,603-51,819,635
(GRCh38/hg38)
Size:
2,033 bases
Orientation:
Plus strand
chr3:51,851,619-51,853,651
(GRCh37/hg19)

Genomic View for IQCF4 Gene

Genes around IQCF4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IQCF4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IQCF4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IQCF4 Gene

Proteins for IQCF4 Gene

Post-translational modifications for IQCF4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IQCF4 Gene

Domains & Families for IQCF4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IQCF4 Gene

Function for IQCF4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IQCF4 Gene

Localization for IQCF4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IQCF4 Gene

Pathways & Interactions for IQCF4 Gene

SuperPathways for IQCF4 Gene

No Data Available

Interacting Proteins for IQCF4 Gene

Gene Ontology (GO) - Biological Process for IQCF4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IQCF4 Gene

Drugs & Compounds for IQCF4 Gene

No Compound Related Data Available

Transcripts for IQCF4 Gene

mRNA/cDNA for IQCF4 Gene

(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IQCF4 Gene

IQ motif containing F5 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IQCF4 Gene

No ASD Table

Relevant External Links for IQCF4 Gene

GeneLoc Exon Structure for
IQCF4

Expression for IQCF4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IQCF4 Gene

mRNA differential expression in normal tissues according to GTEx for IQCF4 Gene

This gene is overexpressed in Testis (x51.9).

SOURCE GeneReport for Unigene cluster for IQCF4 Gene:

Hs.254808
genes like me logo Genes that share expression patterns with IQCF4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IQCF4 Gene

Orthologs for IQCF4 Gene

Evolution for IQCF4 Gene

ENSEMBL:
Gene Tree for IQCF4 (if available)
TreeFam:
Gene Tree for IQCF4 (if available)

No data available for Orthologs for IQCF4 Gene

Paralogs for IQCF4 Gene

No data available for Paralogs for IQCF4 Gene

Variants for IQCF4 Gene

Sequence variations from dbSNP and Humsavar for IQCF4 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000678214 -- 51,815,918(+) C/T upstream_transcript_variant
rs1000897370 -- 51,816,201(+) G/T upstream_transcript_variant
rs1000909488 -- 51,818,492(+) A/T downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1001349892 -- 51,818,726(+) T/C downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1002356093 -- 51,817,171(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for IQCF4 Gene

Variant ID Type Subtype PubMed ID
nsv1139789 CNV duplication 24896259
nsv520211 CNV gain 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for IQCF4 Gene

Disorders for IQCF4 Gene

Additional Disease Information for IQCF4

No disorders were found for IQCF4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IQCF4 Gene

Publications for IQCF4 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for IQCF4 Gene

Sources for IQCF4 Gene

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