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Aliases for IQCF1 Gene

Aliases for IQCF1 Gene

  • IQ Motif Containing F1 2 3

External Ids for IQCF1 Gene

Summaries for IQCF1 Gene

GeneCards Summary for IQCF1 Gene

IQCF1 (IQ Motif Containing F1) is a Protein Coding gene. An important paralog of this gene is IQCF5.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IQCF1 Gene

Genomics for IQCF1 Gene

Genomic Location for IQCF1 Gene

Start:
51,894,876 bp from pter
End:
51,903,370 bp from pter
Size:
8,495 bases
Orientation:
Minus strand

Genomic View for IQCF1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for IQCF1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IQCF1 Gene

Regulatory Elements for IQCF1 Gene

Proteins for IQCF1 Gene

  • Protein details for IQCF1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N6M8-IQCF1_HUMAN
    Recommended name:
    IQ domain-containing protein F1
    Protein Accession:
    Q8N6M8
    Secondary Accessions:
    • Q8N711

    Protein attributes for IQCF1 Gene

    Size:
    205 amino acids
    Molecular mass:
    23699 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for IQCF1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for IQCF1 Gene

Proteomics data for IQCF1 Gene at MOPED

Post-translational modifications for IQCF1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for IQCF1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for IQCF1 Gene

Domains for IQCF1 Gene

Protein Domains for IQCF1 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

IQCF1_HUMAN
Domain:
  • Contains 2 IQ domains.:
    • Q8N6M8
genes like me logo Genes that share domains with IQCF1: view

No data available for Gene Families for IQCF1 Gene

Function for IQCF1 Gene

Gene Ontology (GO) - Molecular Function for IQCF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with IQCF1: view

Phenotypes for IQCF1 Gene

genes like me logo Genes that share phenotypes with IQCF1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for IQCF1 Gene

Localization for IQCF1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for IQCF1 Gene COMPARTMENTS Subcellular localization image for IQCF1 gene
Compartment Confidence
cytosol 3
nucleus 2
extracellular 1

No data available for Gene Ontology (GO) - Cellular Components for IQCF1 Gene

Pathways for IQCF1 Gene

SuperPathways for IQCF1 Gene

No Data Available

Interacting Proteins for IQCF1 Gene

Gene Ontology (GO) - Biological Process for IQCF1 Gene

None

No data available for Pathways by source for IQCF1 Gene

Transcripts for IQCF1 Gene

mRNA/cDNA for IQCF1 Gene

(3) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(12) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IQCF1 Gene

IQ motif containing F1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IQCF1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7
SP1:
SP2: -
SP3:

Relevant External Links for IQCF1 Gene

GeneLoc Exon Structure for
IQCF1
ECgene alternative splicing isoforms for
IQCF1

Expression for IQCF1 Gene

mRNA expression in normal human tissues for IQCF1 Gene

mRNA differential expression in normal tissues according to GTEx for IQCF1 Gene

This gene is overexpressed in Testis (50.7).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for IQCF1 Gene

SOURCE GeneReport for Unigene cluster for IQCF1 Gene Hs.671210

genes like me logo Genes that share expressions with IQCF1: view

Orthologs for IQCF1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for IQCF1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia IQCF1 36
  • 98.86 (n)
  • 98.05 (a)
IQCF1 37
  • 69 (a)
OneToOne
cow
(Bos Taurus)
Mammalia IQCF1 36
  • 72.55 (n)
  • 61.76 (a)
IQCF1 37
  • 57 (a)
OneToOne
dog
(Canis familiaris)
Mammalia IQCF1 36
  • 77.59 (n)
  • 63.84 (a)
IQCF1 37
  • 54 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Iqcf1 36
  • 74.3 (n)
  • 62.57 (a)
Iqcf1 16
Iqcf1 37
  • 55 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 40 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Iqcf1 36
  • 75.79 (n)
  • 62.01 (a)
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 28 (a)
OneToMany
Species with no ortholog for IQCF1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IQCF1 Gene

ENSEMBL:
Gene Tree for IQCF1 (if available)
TreeFam:
Gene Tree for IQCF1 (if available)

Paralogs for IQCF1 Gene

Paralogs for IQCF1 Gene

Selected SIMAP similar genes for IQCF1 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for IQCF1 Gene

genes like me logo Genes that share paralogs with IQCF1: view

Variants for IQCF1 Gene

Sequence variations from dbSNP and Humsavar for IQCF1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs1847677 -- 51,899,162(+) agttc(A/G)cattg intron-variant
rs1847678 -- 51,899,203(+) aaaag(G/T)gggtg intron-variant
rs1948879 -- 51,901,703(+) ggaat(A/G)ccaga intron-variant
rs4615071 -- 51,904,719(+) TGTGG(A/G)AGGAA upstream-variant-2KB
rs4687786 -- 51,897,986(+) CTACA(A/G)ATTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IQCF1 Gene

Variant ID Type Subtype PubMed ID
nsv520211 CNV Gain 19592680

Relevant External Links for IQCF1 Gene

HapMap Linkage Disequilibrium report
IQCF1

Disorders for IQCF1 Gene

No disorders were found for IQCF1 Gene.

No data available for UniProtKB/Swiss-Prot for IQCF1 Gene

Publications for IQCF1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  4. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4

Products for IQCF1 Gene

Sources for IQCF1 Gene

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