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Aliases for IQCF1 Gene

Aliases for IQCF1 Gene

  • IQ Motif Containing F1 2 3 5

External Ids for IQCF1 Gene

Previous GeneCards Identifiers for IQCF1 Gene

  • GC03M051818
  • GC03M051903
  • GC03M051843

Summaries for IQCF1 Gene

GeneCards Summary for IQCF1 Gene

IQCF1 (IQ Motif Containing F1) is a Protein Coding gene. An important paralog of this gene is IQCF5.

UniProtKB/Swiss-Prot for IQCF1 Gene

  • Involved in sperm capacitation and acrosome reaction.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IQCF1 Gene

Genomics for IQCF1 Gene

Regulatory Elements for IQCF1 Gene

Enhancers for IQCF1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G052243 1.8 FANTOM5 ENCODE dbSUPER 13.7 -342.5 -342516 4.9 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 PBRM1 PPM1M LOC101929054 GLYCTK IQCF2 IQCF5 PHF7 IQCF6 IQCF1 WDR82
GH03G052074 0.6 FANTOM5 29.7 -171.2 -171221 0.2 CTCF NCOR1 ZMYM3 REST EP300 NR2F2 IQCF2 PHF7 IQCF5 IQCF1 IQCF6 LINC00696 POC1A
GH03G051678 1.4 FANTOM5 Ensembl ENCODE 1.6 +222.4 222407 4.1 HDAC1 ELF3 HDGF TBP PKNOX1 SIN3A ARID4B RAD21 TCF12 GATA2 IQCF6 DCAF1 RNU6ATAC29P GPR62 IQCF1 IQCF5 IQCF2 RNA5SP132 PIR41340
GH03G051902 0.7 ENCODE 0.7 +0.8 811 0.2 ZNF639 SP3 KLF1 JUN INSM2 ZNF223 KLF17 TSHZ1 JUND ZNF629 IQCF5 IQCF5-AS1 RN7SL504P IQCF3 IQCF4 GPR62 PCBP4 IQCF2 IQCF1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IQCF1 on UCSC Golden Path with GeneCards custom track

Genomic Location for IQCF1 Gene

Chromosome:
3
Start:
51,894,876 bp from pter
End:
51,903,370 bp from pter
Size:
8,495 bases
Orientation:
Minus strand

Genomic View for IQCF1 Gene

Genes around IQCF1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IQCF1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IQCF1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IQCF1 Gene

Proteins for IQCF1 Gene

  • Protein details for IQCF1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N6M8-IQCF1_HUMAN
    Recommended name:
    IQ domain-containing protein F1
    Protein Accession:
    Q8N6M8
    Secondary Accessions:
    • Q8N711

    Protein attributes for IQCF1 Gene

    Size:
    205 amino acids
    Molecular mass:
    23699 Da
    Quaternary structure:
    • Interacts with calmodulin.

    Alternative splice isoforms for IQCF1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for IQCF1 Gene

Post-translational modifications for IQCF1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for IQCF1 Gene

No data available for DME Specific Peptides for IQCF1 Gene

Domains & Families for IQCF1 Gene

Protein Domains for IQCF1 Gene

Suggested Antigen Peptide Sequences for IQCF1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IQCF1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for IQCF1 Gene

Function for IQCF1 Gene

Molecular function for IQCF1 Gene

UniProtKB/Swiss-Prot Function:
Involved in sperm capacitation and acrosome reaction.

Gene Ontology (GO) - Molecular Function for IQCF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005516 calmodulin binding IBA,IEA --
genes like me logo Genes that share ontologies with IQCF1: view
genes like me logo Genes that share phenotypes with IQCF1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IQCF1 Gene

Localization for IQCF1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for IQCF1 Gene

Cytoplasmic vesicle, secretory vesicle, acrosome.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for IQCF1 gene
Compartment Confidence
cytosol 3
nucleus 2
extracellular 1

Gene Ontology (GO) - Cellular Components for IQCF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001669 acrosomal vesicle IDA 25380116
GO:0031410 cytoplasmic vesicle IEA --
genes like me logo Genes that share ontologies with IQCF1: view

Pathways & Interactions for IQCF1 Gene

SuperPathways for IQCF1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for IQCF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0060474 positive regulation of flagellated sperm motility involved in capacitation IEA,ISS --
GO:2000344 positive regulation of acrosome reaction IEA,ISS --
genes like me logo Genes that share ontologies with IQCF1: view

No data available for Pathways by source and SIGNOR curated interactions for IQCF1 Gene

Drugs & Compounds for IQCF1 Gene

No Compound Related Data Available

Transcripts for IQCF1 Gene

mRNA/cDNA for IQCF1 Gene

(3) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(12) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IQCF1 Gene

IQ motif containing F1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for IQCF1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7
SP1:
SP2: -
SP3:

Relevant External Links for IQCF1 Gene

GeneLoc Exon Structure for
IQCF1
ECgene alternative splicing isoforms for
IQCF1

Expression for IQCF1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IQCF1 Gene

mRNA differential expression in normal tissues according to GTEx for IQCF1 Gene

This gene is overexpressed in Testis (x50.7).

Protein differential expression in normal tissues from HIPED for IQCF1 Gene

This gene is overexpressed in Plasma (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for IQCF1 Gene



Protein tissue co-expression partners for IQCF1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of IQCF1 Gene:

IQCF1

SOURCE GeneReport for Unigene cluster for IQCF1 Gene:

Hs.671210

Evidence on tissue expression from TISSUES for IQCF1 Gene

  • Nervous system(4.1)
genes like me logo Genes that share expression patterns with IQCF1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for IQCF1 Gene

Orthologs for IQCF1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for IQCF1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia IQCF1 34 35
  • 98.86 (n)
dog
(Canis familiaris)
Mammalia IQCF1 34 35
  • 77.59 (n)
rat
(Rattus norvegicus)
Mammalia Iqcf1 34
  • 75.79 (n)
mouse
(Mus musculus)
Mammalia Iqcf1 34 16 35
  • 74.3 (n)
cow
(Bos Taurus)
Mammalia IQCF1 34 35
  • 72.55 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 40 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 28 (a)
OneToMany
Species where no ortholog for IQCF1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IQCF1 Gene

ENSEMBL:
Gene Tree for IQCF1 (if available)
TreeFam:
Gene Tree for IQCF1 (if available)

Paralogs for IQCF1 Gene

Paralogs for IQCF1 Gene

(4) SIMAP similar genes for IQCF1 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for IQCF1 Gene

genes like me logo Genes that share paralogs with IQCF1: view

Variants for IQCF1 Gene

Sequence variations from dbSNP and Humsavar for IQCF1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000047768 -- 51,903,945(+) TAGTT(C/T)ATTCA upstream-variant-2KB
rs1000062819 -- 51,896,967(+) TGTTA(A/C/G)ATATG intron-variant
rs1001561934 -- 51,898,106(+) CCTAG(C/G)GGAAG intron-variant, upstream-variant-2KB
rs1001588468 -- 51,905,354(+) GAAAA(A/G)ATACC upstream-variant-2KB
rs1001734149 -- 51,898,406(+) TCAGT(A/G)TAAAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for IQCF1 Gene

Variant ID Type Subtype PubMed ID
nsv520211 CNV gain 19592680
nsv963317 CNV duplication 23825009

Variation tolerance for IQCF1 Gene

Residual Variation Intolerance Score: 87.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.47; 55.04% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for IQCF1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IQCF1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IQCF1 Gene

Disorders for IQCF1 Gene

Relevant External Links for IQCF1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IQCF1

No disorders were found for IQCF1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IQCF1 Gene

Publications for IQCF1 Gene

  1. A novel acrosomal protein, IQCF1, involved in sperm capacitation and the acrosome reaction. (PMID: 25380116) Fang P. … Qiao Z. (Andrology 2015) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64

Products for IQCF1 Gene

Sources for IQCF1 Gene

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