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Aliases for IPW Gene

Subcategory (RNA class) for IPW Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for IPW Gene

  • Imprinted In Prader-Willi Syndrome (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 2 2 3
  • NCRNA00002 3

External Ids for IPW Gene

Previous GeneCards Identifiers for IPW Gene

  • GC15U990031
  • GC15P022909
  • GC15P022912
  • GC15P025361
  • GC15P003497

Summaries for IPW Gene

Entrez Gene Summary for IPW Gene

  • This gene is non-protein coding, is expressed exclusively from the paternal allele, and may play a role in the imprinting process. Mutations in this gene are associated with Prader-Willi syndrome. [provided by RefSeq, May 2010]

GeneCards Summary for IPW Gene

IPW (Imprinted In Prader-Willi Syndrome (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with IPW include Prader-Willi Syndrome and Chromosomal Disease.

Additional gene information for IPW Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IPW Gene

Genomics for IPW Gene

Genomic Location for IPW Gene

Chromosome:
15
Start:
25,116,545 bp from pter
End:
25,122,476 bp from pter
Size:
5,932 bases
Orientation:
Plus strand

Genomic View for IPW Gene

Genes around IPW on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IPW Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IPW Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IPW Gene

Proteins for IPW Gene

Post-translational modifications for IPW Gene

No Post-translational modifications

No data available for DME Specific Peptides for IPW Gene

Domains & Families for IPW Gene

Gene Families for IPW Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IPW: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IPW Gene

Function for IPW Gene

Molecular function for IPW Gene

GENATLAS Biochemistry:
paternally expressed gene,imprinted in Prader-Willi region,may be the same as Par-1 or 7 (see PWCR)

Phenotypes for IPW Gene

GenomeRNAi human phenotypes for IPW:
genes like me logo Genes that share phenotypes with IPW: view

Human Phenotype Ontology for IPW Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for IPW
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IPW Gene

Localization for IPW Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for IPW gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IPW Gene

Pathways & Interactions for IPW Gene

No Data Available

Interacting Proteins for IPW Gene

Gene Ontology (GO) - Biological Process for IPW Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IPW Gene

Drugs & Compounds for IPW Gene

No Compound Related Data Available

Transcripts for IPW Gene

mRNA/cDNA for IPW Gene

(1) Selected AceView cDNA sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for IPW
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for IPW Gene

No ASD Table

Relevant External Links for IPW Gene

GeneLoc Exon Structure for
IPW
ECgene alternative splicing isoforms for
IPW

Expression for IPW Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IPW Gene

NURSA nuclear receptor signaling pathways regulating expression of IPW Gene:

IPW
genes like me logo Genes that share expression patterns with IPW: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IPW Gene

Orthologs for IPW Gene

No data available for Orthologs and Evolution for IPW Gene

Paralogs for IPW Gene

No data available for Paralogs for IPW Gene

Variants for IPW Gene

Sequence variations from dbSNP and Humsavar for IPW Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000114017 -- 25,117,601(+) TGATG(A/T)CATTT intron-variant
rs1000157874 -- 25,117,020(+) TGACA(C/T)ACAAA nc-transcript-variant
rs1000528301 -- 25,117,918(+) ATTGT(C/T)TTGAG intron-variant
rs1000548373 -- 25,115,401(+) CCCAC(A/G)CCCCT upstream-variant-2KB
rs1000970268 -- 25,122,918(+) TAAAT(A/G)CATTG downstream-variant-500B

Relevant External Links for IPW Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IPW

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IPW Gene

Disorders for IPW Gene

MalaCards: The human disease database

(2) MalaCards diseases for IPW Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
prader-willi syndrome
  • prader willi syndrome
chromosomal disease
  • chromosomal disorders
- elite association - COSMIC cancer census association via MalaCards
Search IPW in MalaCards View complete list of genes associated with diseases

Relevant External Links for IPW

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IPW
genes like me logo Genes that share disorders with IPW: view

No data available for UniProtKB/Swiss-Prot and Genatlas for IPW Gene

Publications for IPW Gene

  1. Imprinted genes in the Prader-Willi deletion. (PMID: 9601023) Francke U (Novartis Foundation symposium 1998) 2 3 22 60
  2. Identification of a novel paternally expressed gene in the Prader-Willi syndrome region. (PMID: 7849716) Wevrick R … Francke U (Human molecular genetics 1994) 2 3 60
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 60
  4. Clonal maintenance of imprinted expression of SNRPN and IPW in normal lymphocytes: correlation with allele-specific methylation of SNRPN intron 1 but not intron 7. (PMID: 11281449) Balmer D … LaSalle JM (Human genetics 2001) 22 60
  5. Association of acetylated histones with paternally expressed genes in the Prader--Willi deletion region. (PMID: 11230184) Fulmer-Smentek SB … Francke U (Human molecular genetics 2001) 22 60

Products for IPW Gene

Sources for IPW Gene

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