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Aliases for IPO9-AS1 Gene

Subcategory (RNA class) for IPO9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IPO9-AS1 Gene

  • IPO9 Antisense RNA 1 2 3 5
  • IPO9 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for IPO9-AS1 Gene

Summaries for IPO9-AS1 Gene

GeneCards Summary for IPO9-AS1 Gene

IPO9-AS1 (IPO9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IPO9-AS1 Gene

Genomics for IPO9-AS1 Gene

Regulatory Elements for IPO9-AS1 Gene

Enhancers for IPO9-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F201498 1.1 FANTOM5 ENCODE 50.4 +326.4 326419 10.2 PKNOX1 CREB3L1 ZFP64 SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 FOS IPO9 IPO9-AS1 LOC102723465 RPS10P7 ENSG00000235121 NAV1 ENSG00000236390 RNU6-704P RNPEP ENSG00000273478
GH01F201772 1.2 FANTOM5 Ensembl ENCODE 48.1 +55.6 55588 3.9 PKNOX1 ZFP64 RCOR1 ZNF202 ZNF623 ZNF781 ZNF518A ZNF585B GLIS1 KDM1A IPO9-AS1 IPO9 ENSG00000235121 NAV1 MIR1231 RNU6-501P CSRP1 ENSG00000236390 LOC102723465 ENSG00000224536
GH01F201530 1.2 FANTOM5 Ensembl ENCODE 37.8 +298.1 298092 2.8 ATF1 PKNOX1 ZNF493 ZFP64 SIN3A ZNF2 YY1 ZNF121 GLIS2 ELK1 IPO9 IPO9-AS1 NAV1 ENSG00000235121 LOC102723465 ENSG00000224536 CSRP1 PHLDA3 ENSG00000224818 RNU6-501P
GH01F202157 0.9 FANTOM5 ENCODE 28.5 -332.6 -332554 8.9 HDGF PKNOX1 CREB3L1 WRNIP1 SIN3A YBX1 YY1 ZNF143 ZNF207 KLF13 IPO9-AS1 IPO9 PTPN7 RNPEP CYB5R1 ENSG00000235121 PTPRVP ENSG00000273478 RPS27P8
GH01F202189 0.7 ENCODE 28.5 -360.4 -360391 1.8 HDGF ATF1 PKNOX1 ARNT CREB3L1 ARID4B YBX1 ZNF2 GATA2 ZNF143 IPO9-AS1 IPO9 CYB5R1 ENSG00000235121 PTPRVP PTPN7 LGR6 GC01M202172
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around IPO9-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for IPO9-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000082093 -141 1801 HDGF PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143

Genomic Location for IPO9-AS1 Gene

Chromosome:
1
Start:
201,688,256 bp from pter
End:
201,829,559 bp from pter
Size:
141,304 bases
Orientation:
Minus strand

Genomic View for IPO9-AS1 Gene

Genes around IPO9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IPO9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IPO9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IPO9-AS1 Gene

Proteins for IPO9-AS1 Gene

Post-translational modifications for IPO9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IPO9-AS1 Gene

Domains & Families for IPO9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IPO9-AS1 Gene

Function for IPO9-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IPO9-AS1 Gene

Localization for IPO9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for IPO9-AS1 Gene

Pathways & Interactions for IPO9-AS1 Gene

SuperPathways for IPO9-AS1 Gene

No Data Available

Interacting Proteins for IPO9-AS1 Gene

Gene Ontology (GO) - Biological Process for IPO9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IPO9-AS1 Gene

Transcripts for IPO9-AS1 Gene

mRNA/cDNA for IPO9-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IPO9-AS1 Gene

No ASD Table

Relevant External Links for IPO9-AS1 Gene

GeneLoc Exon Structure for
IPO9-AS1
ECgene alternative splicing isoforms for
IPO9-AS1

Expression for IPO9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for IPO9-AS1 Gene

genes like me logo Genes that share expression patterns with IPO9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for IPO9-AS1 Gene

Orthologs for IPO9-AS1 Gene

Evolution for IPO9-AS1 Gene

ENSEMBL:
Gene Tree for IPO9-AS1 (if available)
TreeFam:
Gene Tree for IPO9-AS1 (if available)

No data available for Orthologs for IPO9-AS1 Gene

Paralogs for IPO9-AS1 Gene

No data available for Paralogs for IPO9-AS1 Gene

Variants for IPO9-AS1 Gene

Sequence variations from dbSNP and Humsavar for IPO9-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs879255417 Uncertain significance 201,785,346(+) AAAGG(-/G)CTCAG intron-variant, reference, frameshift-variant
rs1015144 -- 201,769,225(+) GTTCT(C/T)TTTAT intron-variant
rs10157564 -- 201,732,501(+) CTCCA(A/C)AAGTC intron-variant
rs10158381 -- 201,747,523(+) TTTGC(C/T)CCTAG intron-variant
rs10158869 -- 201,690,419(+) CCTCT(A/C)TGGCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IPO9-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv136e212 CNV loss 25503493
esv1632559 OTHER inversion 17803354
esv2666987 CNV deletion 23128226
esv2676669 CNV deletion 23128226
esv2721495 CNV deletion 23290073
esv2721506 CNV deletion 23290073
esv3588574 CNV loss 21293372
nsv1012535 CNV loss 25217958
nsv478835 CNV novel sequence insertion 20440878
nsv818766 CNV loss 17921354
nsv826187 CNV loss 20364138

Relevant External Links for IPO9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IPO9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IPO9-AS1 Gene

Disorders for IPO9-AS1 Gene

Relevant External Links for IPO9-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IPO9-AS1

No disorders were found for IPO9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IPO9-AS1 Gene

Publications for IPO9-AS1 Gene

No publications were found for IPO9-AS1 Gene.

Products for IPO9-AS1 Gene

Sources for IPO9-AS1 Gene

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