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Aliases for IPO9-AS1 Gene

Subcategory (RNA class) for IPO9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IPO9-AS1 Gene

  • IPO9 Antisense RNA 1 2 3 5
  • IPO9 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for IPO9-AS1 Gene

Summaries for IPO9-AS1 Gene

GeneCards Summary for IPO9-AS1 Gene

IPO9-AS1 (IPO9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for IPO9-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IPO9-AS1 Gene

Genomics for IPO9-AS1 Gene

Regulatory Elements for IPO9-AS1 Gene

Enhancers for IPO9-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H201498 1.8 FANTOM5 ENCODE dbSUPER 57 +326.4 326419 10.2 PKNOX1 FOXA2 ZFP64 SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF766 ZNF143 IPO9-AS1 IPO9 ELF3-AS1 RNPEP ENSG00000273478 RPS10P7 NAV1 DDX59 ENSG00000235121 LMOD1
GH01H201435 1.6 Ensembl ENCODE dbSUPER 41.3 +393.6 393591 0.9 HDGF ARNT ZFP64 SIN3A FEZF1 ZNF2 ZBTB7B ZNF302 ZNF207 ZNF143 IPO9 IPO9-AS1 ENSG00000224818 DDX59 ENSG00000235121 CAMSAP2 RNPEP ENSG00000273478 PHLDA3 LAD1
GH01H201550 1.9 FANTOM5 Ensembl ENCODE dbSUPER 23.3 +276.5 276454 4.6 PKNOX1 ATF1 ARNT ZNF121 ZNF766 ELK1 ZNF416 FOS ATF7 SP3 IPO9 RNPEP ENSG00000273478 IPO9-AS1 DDX59 ELF3-AS1 RPS27P8 NAV1 LMOD1 GC01M201547
GH01H202157 1.9 FANTOM5 Ensembl ENCODE dbSUPER 18.6 -332.6 -332554 8.9 HDGF PKNOX1 ARNT YBX1 YY1 ZNF766 CBX5 ZNF143 REST SMARCB1 IPO9 KDM5B RNPEP ENSG00000273478 IPO9-AS1 PTPN7 CYB5R1 PTPRVP HNRNPA1P59 ENSG00000235121
GH01H201941 1.5 Ensembl ENCODE dbSUPER 18.6 -112.4 -112363 1.5 HDGF PKNOX1 ARNT TCF12 ZNF121 GTF3C2 ZNF766 GATA2 NCOA1 REST IPO9-AS1 RNPEP IPO9 ENSG00000273478 ELF3-AS1 HNRNPA1P59 KDM5B LOC100506672 ENSG00000235121 LMOD1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IPO9-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for IPO9-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000018194 -141 1401 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF207

Genomic Locations for IPO9-AS1 Gene

Genomic Locations for IPO9-AS1 Gene
chr1:201,688,256-201,829,559
(GRCh38/hg38)
Size:
141,304 bases
Orientation:
Minus strand
chr1:201,657,387-201,798,687
(GRCh37/hg19)

Genomic View for IPO9-AS1 Gene

Genes around IPO9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IPO9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IPO9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IPO9-AS1 Gene

Proteins for IPO9-AS1 Gene

Post-translational modifications for IPO9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IPO9-AS1 Gene

Domains & Families for IPO9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IPO9-AS1 Gene

Function for IPO9-AS1 Gene

Phenotypes From GWAS Catalog for IPO9-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IPO9-AS1 Gene

Localization for IPO9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IPO9-AS1 Gene

Pathways & Interactions for IPO9-AS1 Gene

SuperPathways for IPO9-AS1 Gene

No Data Available

Interacting Proteins for IPO9-AS1 Gene

Gene Ontology (GO) - Biological Process for IPO9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IPO9-AS1 Gene

Drugs & Compounds for IPO9-AS1 Gene

No Compound Related Data Available

Transcripts for IPO9-AS1 Gene

mRNA/cDNA for IPO9-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for IPO9-AS1 Gene

No ASD Table

Relevant External Links for IPO9-AS1 Gene

GeneLoc Exon Structure for
IPO9-AS1
ECgene alternative splicing isoforms for
IPO9-AS1

Expression for IPO9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IPO9-AS1 Gene

genes like me logo Genes that share expression patterns with IPO9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IPO9-AS1 Gene

Orthologs for IPO9-AS1 Gene

Evolution for IPO9-AS1 Gene

ENSEMBL:
Gene Tree for IPO9-AS1 (if available)
TreeFam:
Gene Tree for IPO9-AS1 (if available)

No data available for Orthologs for IPO9-AS1 Gene

Paralogs for IPO9-AS1 Gene

No data available for Paralogs for IPO9-AS1 Gene

Variants for IPO9-AS1 Gene

Sequence variations from dbSNP and Humsavar for IPO9-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs879255417 Uncertain significance 201,785,346(+) AAAGG(-/G)CTCAG intron-variant, reference, frameshift-variant
rs1000005685 -- 201,810,932(+) CTTCT(C/T)CTTTC intron-variant
rs1000034943 -- 201,719,525(+) CCCCA(A/C)GCCCC intron-variant, nc-transcript-variant
rs1000094957 -- 201,827,513(+) CCTGT(A/G)GTTCT intron-variant, upstream-variant-2KB
rs1000110306 -- 201,735,532(+) AAGAC(A/C)CAGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IPO9-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv826187 CNV loss 20364138
nsv818766 CNV loss 17921354
nsv478835 CNV novel sequence insertion 20440878
nsv1012535 CNV loss 25217958
esv3588574 CNV loss 21293372
esv2721506 CNV deletion 23290073
esv2721495 CNV deletion 23290073
esv2676669 CNV deletion 23128226
esv2666987 CNV deletion 23128226
esv1632559 OTHER inversion 17803354
dgv136e212 CNV loss 25503493

Relevant External Links for IPO9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IPO9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IPO9-AS1 Gene

Disorders for IPO9-AS1 Gene

Relevant External Links for IPO9-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IPO9-AS1

No disorders were found for IPO9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IPO9-AS1 Gene

Publications for IPO9-AS1 Gene

No publications were found for IPO9-AS1 Gene.

Products for IPO9-AS1 Gene

Sources for IPO9-AS1 Gene

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