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Aliases for IPO4 Gene

Aliases for IPO4 Gene

  • Importin 4 2 3
  • Ran-Binding Protein 4 3 4
  • Importin-4b 3 4
  • RanBP4 3 4
  • Imp4b 3 4
  • Imp4 3 4
  • Importin-4 3

External Ids for IPO4 Gene

Previous GeneCards Identifiers for IPO4 Gene

  • GC14M018436
  • GC14M022639
  • GC14M023719
  • GC14M024649
  • GC14M004764

Summaries for IPO4 Gene

GeneCards Summary for IPO4 Gene

IPO4 (Importin 4) is a Protein Coding gene. GO annotations related to this gene include Ran GTPase binding.

UniProtKB/Swiss-Prot for IPO4 Gene

  • Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Mediates the nuclear import of RPS3A. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS.

Gene Wiki entry for IPO4 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IPO4 Gene

Genomics for IPO4 Gene

Regulatory Elements for IPO4 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for IPO4 Gene

Start:
24,180,219 bp from pter
End:
24,188,964 bp from pter
Size:
8,746 bases
Orientation:
Minus strand

Genomic View for IPO4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for IPO4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IPO4 Gene

Proteins for IPO4 Gene

  • Protein details for IPO4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TEX9-IPO4_HUMAN
    Recommended name:
    Importin-4
    Protein Accession:
    Q8TEX9
    Secondary Accessions:
    • B2RN95
    • Q2NL96
    • Q86TZ9
    • Q8NCG8
    • Q96SJ3
    • Q9BTI4
    • Q9H5L0

    Protein attributes for IPO4 Gene

    Size:
    1081 amino acids
    Molecular mass:
    118715 Da
    Quaternary structure:
    • Binds with high affinity to RPS3A. The binding is coupled to RanGTP cycles. Binds to human cytomegalovirus UL84. Found in a cytosolic complex with ASF1A, ASF1B, CDAN1 and histones H3.1 and H4.
    SequenceCaution:
    • Sequence=BAB15616.1; Type=Frameshift; Positions=234; Evidence={ECO:0000305}; Sequence=BAB55421.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=BAC11174.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAD62595.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for IPO4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for IPO4 Gene

Proteomics data for IPO4 Gene at MOPED

Post-translational modifications for IPO4 Gene

  • Ubiquitination at Lys81, Lys370, Lys401, Lys788, Lys801, and Lys875
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for IPO4 Gene

Domains for IPO4 Gene

Gene Families for IPO4 Gene

HGNC:
  • IPO :Importins

Protein Domains for IPO4 Gene

Suggested Antigen Peptide Sequences for IPO4 Gene

Graphical View of Domain Structure for InterPro Entry

Q8TEX9

UniProtKB/Swiss-Prot:

IPO4_HUMAN :
  • Q8TEX9
Domain:
  • Contains 1 importin N-terminal domain.
Family:
  • Belongs to the importin beta family.
Similarity:
  • Contains 6 HEAT repeats.
genes like me logo Genes that share domains with IPO4: view

Function for IPO4 Gene

Molecular function for IPO4 Gene

UniProtKB/Swiss-Prot Function: Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Mediates the nuclear import of RPS3A. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS.

Gene Ontology (GO) - Molecular Function for IPO4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005488 binding --
GO:0005515 protein binding IPI 17616579
GO:0008536 Ran GTPase binding IEA --
genes like me logo Genes that share ontologies with IPO4: view

Phenotypes for IPO4 Gene

GenomeRNAi human phenotypes for IPO4:
genes like me logo Genes that share phenotypes with IPO4: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for IPO4

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for IPO4 Gene

Localization for IPO4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for IPO4 Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for IPO4 Gene COMPARTMENTS Subcellular localization image for IPO4 gene
Compartment Confidence
cytosol 2
nucleus 2
cytoskeleton 1
extracellular 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for IPO4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000790 nuclear chromatin IDA 14718166
GO:0005634 nucleus --
GO:0005643 colocalizes_with nuclear pore NAS 11823430
GO:0005737 cytoplasm IEA --
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with IPO4: view

Pathways for IPO4 Gene

SuperPathways for IPO4 Gene

No Data Available

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for IPO4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006335 DNA replication-dependent nucleosome assembly IDA 14718166
GO:0006336 DNA replication-independent nucleosome assembly IDA 14718166
GO:0006886 intracellular protein transport IEA --
GO:0015031 protein transport NAS 11823430
genes like me logo Genes that share ontologies with IPO4: view

No data available for Pathways by source for IPO4 Gene

Compounds for IPO4 Gene

(1) HMDB Compounds for IPO4 Gene

Compound Synonyms Cas Number PubMed IDs
Guanosine triphosphate
  • 5'-GTP
86-01-1
genes like me logo Genes that share compounds with IPO4: view

Transcripts for IPO4 Gene

Unigene Clusters for IPO4 Gene

Importin 4:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for IPO4

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for IPO4 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4a · 4b · 4c · 4d · 4e ^ 5 ^ 6a · 6b · 6c · 6d ^ 7a · 7b ^ 8a · 8b ^ 9 ^
SP1: - - - - -
SP2: - - - - - -
SP3: - - - - - - -
SP4: - - - - - -
SP5: -
SP6:
SP7:
SP8: - - - - -
SP9: - - - -
SP10: - - - - -
SP11: - - -
SP12: - - - -
SP13:
SP14:
SP15: - - - -
SP16: - - - - - -
SP17: -
SP18:
SP19:
SP20: -

ExUns: 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17a · 17b ^ 18 ^ 19 ^ 20a · 20b ^ 21 ^ 22 ^ 23 ^ 24a · 24b ^ 25a · 25b ^ 26 ^ 27 ^ 28 ^ 29 ^ 30
SP1: - - -
SP2:
SP3:
SP4:
SP5:
SP6: -
SP7: - - -
SP8:
SP9:
SP10:
SP11:
SP12:
SP13: -
SP14:
SP15:
SP16:
SP17:
SP18:
SP19:
SP20:

Relevant External Links for IPO4 Gene

GeneLoc Exon Structure for
IPO4
ECgene alternative splicing isoforms for
IPO4

Expression for IPO4 Gene

mRNA expression in normal human tissues for IPO4 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for IPO4 Gene

SOURCE GeneReport for Unigene cluster for IPO4 Gene Hs.411865

genes like me logo Genes that share expressions with IPO4: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for IPO4 Gene

Orthologs for IPO4 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for IPO4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia IPO4 35
  • 99.35 (n)
  • 99.07 (a)
IPO4 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia IPO4 35
  • 88.25 (n)
  • 90.47 (a)
IPO4 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia IPO4 35
  • 89.05 (n)
  • 92.41 (a)
IPO4 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ipo4 35
  • 82.93 (n)
  • 81.94 (a)
Ipo4 16
Ipo4 36
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia IPO4 36
  • 72 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ipo4 35
  • 83.33 (n)
  • 83.43 (a)
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 52 (a)
OneToMany
-- 36
  • 54 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia ipo4 35
  • 55.27 (n)
  • 47.78 (a)
zebrafish
(Danio rerio)
Actinopterygii ipo4 35
  • 55.25 (n)
  • 47.63 (a)
ipo4 36
  • 47 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006942 35
  • 48.3 (n)
  • 33.27 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG32164 36
  • 28 (a)
OneToMany
CG32165 35
  • 45.31 (n)
  • 30.43 (a)
CG32165 36
  • 28 (a)
OneToMany
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AGL298C 35
  • 41.32 (n)
  • 25.41 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes KAP123 35
  • 38.47 (n)
  • 24.95 (a)
KAP123 36
  • 23 (a)
OneToOne
KAP123 38
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E20769g 35
  • 39.7 (n)
  • 27.97 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G27640 35
  • 41.11 (n)
  • 29.61 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU05650 35
  • 45.89 (n)
  • 31.16 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes kap123 35
  • 40.88 (n)
  • 28.95 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 36 (a)
OneToOne
Species with no ortholog for IPO4:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for IPO4 Gene

ENSEMBL:
Gene Tree for IPO4 (if available)
TreeFam:
Gene Tree for IPO4 (if available)

Paralogs for IPO4 Gene

No data available for Paralogs for IPO4 Gene

Variants for IPO4 Gene

Sequence variations from dbSNP and Humsavar for IPO4 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs1078207 -- 24,182,164(-) CATCA(G/T)AAACA splice-acceptor-variant
rs1543518 -- 24,183,981(-) GTGGG(C/G/T)GGGCT intron-variant
rs2025257 -- 24,185,381(-) CCTGC(G/T)GCCAT intron-variant
rs2025258 -- 24,185,283(-) GAGGT(A/G)ATGCC reference, synonymous-codon, nc-transcript-variant
rs2295977 -- 24,188,020(-) CAGAA(A/G)AATAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IPO4 Gene

Variant ID Type Subtype PubMed ID
nsv901498 CNV Loss 21882294
nsv7249 OTHER Inversion 18451855
nsv522667 CNV Loss 19592680
nsv1220 CNV Insertion 18451855

Relevant External Links for IPO4 Gene

HapMap Linkage Disequilibrium report
IPO4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IPO4 Gene

Disorders for IPO4 Gene

(1) University of Copenhagen DISEASES for IPO4 Gene

genes like me logo Genes that share disorders with IPO4: view

No data available for UniProtKB/Swiss-Prot for IPO4 Gene

Publications for IPO4 Gene

  1. Importins fulfill a dual function as nuclear import receptors and cytoplasmic chaperones for exposed basic domains. (PMID: 11823430) Jaekel S. … Goerlich D. (EMBO J. 2002) 2 3 4
  2. A nonconventional nuclear localization signal within the UL84 protein of human cytomegalovirus mediates nuclear import via the importin alpha/beta pathway. (PMID: 12610148) Lischka P. … Stamminger T. (J. Virol. 2003) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Codanin-1, mutated in the anaemic disease CDAI, regulates Asf1 function in S-phase histone supply. (PMID: 22407294) Ask K. … Groth A. (EMBO J. 2012) 3 4

Products for IPO4 Gene

Sources for IPO4 Gene

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