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Aliases for INTS6P1 Gene

Aliases for INTS6P1 Gene

  • Integrator Complex Subunit 6 Pseudogene 1 2 3 5

External Ids for INTS6P1 Gene

Summaries for INTS6P1 Gene

GeneCards Summary for INTS6P1 Gene

INTS6P1 (Integrator Complex Subunit 6 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for INTS6P1 Gene

Genomics for INTS6P1 Gene

Regulatory Elements for INTS6P1 Gene

Enhancers for INTS6P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G039716 1.1 Ensembl ENCODE 0.7 +4.8 4836 0.7 FOXA2 ZSCAN9 RAD21 RFX5 YY1 GATA2 MIXL1 THAP11 CEBPB REST INTS6P1 CCDC11P1
GH05G039759 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -39.4 -39391 3.6 GTF2F1 TAF1 JUN MAX RAD21 RFX5 GTF3C2 RCOR1 FOS TCF7L2 LINC02104 OSMR-AS1 INTS6P1 GCSHP1
GH05G039711 1.1 Ensembl ENCODE 0.4 +8.1 8096 2.9 ATF1 FOXA2 BRCA1 RAD21 RFX5 RARA FOS ZHX1 ZNF654 CEBPB INTS6P1 CCDC11P1
GH05G039755 1.3 Ensembl ENCODE dbSUPER 0.3 -34.8 -34831 2.6 JUN BACH1 RFX5 FOSL1 ZNF316 GATA3 NFE2 FOS TRIM24 MAFK LINC02104 INTS6P1 GCSHP1
GH05G039774 1.1 Ensembl ENCODE dbSUPER 0.2 -54.1 -54140 1.6 SMARCC1 JUN CEBPB EP300 JUND MAFF STAT3 FOS MAFK INTS6P1 GCSHP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around INTS6P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for INTS6P1 Gene

Chromosome:
5
Start:
39,718,984 bp from pter
End:
39,721,513 bp from pter
Size:
2,530 bases
Orientation:
Minus strand

Genomic View for INTS6P1 Gene

Genes around INTS6P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
INTS6P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for INTS6P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for INTS6P1 Gene

Proteins for INTS6P1 Gene

Post-translational modifications for INTS6P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for INTS6P1 Gene

Domains & Families for INTS6P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for INTS6P1 Gene

Function for INTS6P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for INTS6P1 Gene

Localization for INTS6P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for INTS6P1 Gene

Pathways & Interactions for INTS6P1 Gene

SuperPathways for INTS6P1 Gene

No Data Available

Interacting Proteins for INTS6P1 Gene

Gene Ontology (GO) - Biological Process for INTS6P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for INTS6P1 Gene

Transcripts for INTS6P1 Gene

mRNA/cDNA for INTS6P1 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for INTS6P1 Gene

No ASD Table

Relevant External Links for INTS6P1 Gene

GeneLoc Exon Structure for
INTS6P1
ECgene alternative splicing isoforms for
INTS6P1

Expression for INTS6P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for INTS6P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of INTS6P1 Gene:

INTS6P1
genes like me logo Genes that share expression patterns with INTS6P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for INTS6P1 Gene

Orthologs for INTS6P1 Gene

Evolution for INTS6P1 Gene

ENSEMBL:
Gene Tree for INTS6P1 (if available)
TreeFam:
Gene Tree for INTS6P1 (if available)

No data available for Orthologs for INTS6P1 Gene

Paralogs for INTS6P1 Gene

No data available for Paralogs for INTS6P1 Gene

Variants for INTS6P1 Gene

Relevant External Links for INTS6P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
INTS6P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for INTS6P1 Gene

Disorders for INTS6P1 Gene

Relevant External Links for INTS6P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
INTS6P1

No disorders were found for INTS6P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for INTS6P1 Gene

Publications for INTS6P1 Gene

  1. Pseudogene integrator complex subunit 6 pseudogene 1 (INTS6P1) as a novel plasma-based biomarker for hepatocellular carcinoma screening. (PMID: 26286832) Lui K.Y. … Lu M.Q. (Tumour Biol. 2016) 3 64
  2. Pseudogene INTS6P1 regulates its cognate gene INTS6 through competitive binding of miR-17-5p in hepatocellular carcinoma. (PMID: 25686840) Peng H. … Selaru F.M. (Oncotarget 2015) 3 64
  3. Promoter CpG hypermethylation and downregulation of DICE1 expression in prostate cancer. (PMID: 16007164) Roepke A. … Wieacker P.F. (Oncogene 2005) 3 64

Products for INTS6P1 Gene

Sources for INTS6P1 Gene

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