Free for academic non-profit institutions. Other users need a Commercial license

Aliases for INTS6L-AS1 Gene

Subcategory (RNA class) for INTS6L-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for INTS6L-AS1 Gene

  • INTS6L Antisense RNA 1 2 3 5
  • DDX26B Antisense RNA 1 (Non-Protein Coding) 2 3
  • DDX26B Antisense RNA 1 2
  • DDX26B-AS1 3

External Ids for INTS6L-AS1 Gene

Previous HGNC Symbols for INTS6L-AS1 Gene

  • DDX26B-AS1

Summaries for INTS6L-AS1 Gene

GeneCards Summary for INTS6L-AS1 Gene

INTS6L-AS1 (INTS6L Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for INTS6L-AS1 Gene

Genomics for INTS6L-AS1 Gene

Regulatory Elements for INTS6L-AS1 Gene

Enhancers for INTS6L-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG135519 1.1 ENCODE 0.7 -1.3 -1333 5.0 PKNOX1 CREB3L1 ARNT WRNIP1 SIN3A YY1 ZNF766 ZNF143 ZNF263 SP3 INTS6L INTS6L-AS1 PIR34853
GH0XG135536 0.7 ENCODE 0.4 -16.4 -16385 0.7 SIN3A MAFG DPF2 RAD21 JUND GATA3 ZNF316 NFE2 FOS EMSY INTS6L INTS6L-AS1 PIR34853
GH0XG135527 0.5 ENCODE 0.4 -7.5 -7508 0.9 E2F5 IKZF1 HMBOX1 INTS6L INTS6L-AS1 PIR34853
GH0XG135544 0.6 ENCODE 0.3 -23.5 -23457 0.2 CTCF ESRRA ZNF580 ZEB2 ZNF24 RAD21 INTS6L-AS1 PIR34853
GH0XG135545 0.4 Ensembl 0.3 -23.9 -23927 0.4 ZNF341 ZNF24 INTS6L-AS1 PIR34853
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around INTS6L-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for INTS6L-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000249015 -826 3001 PKNOX1 CREB3L1 ARNT WRNIP1 SIN3A YY1 ZNF766 ZNF143 ZNF263 SP3

Genomic Location for INTS6L-AS1 Gene

Chromosome:
X
Start:
135,520,083 bp from pter
End:
135,520,674 bp from pter
Size:
592 bases
Orientation:
Minus strand

Genomic View for INTS6L-AS1 Gene

Genes around INTS6L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
INTS6L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for INTS6L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for INTS6L-AS1 Gene

Proteins for INTS6L-AS1 Gene

Post-translational modifications for INTS6L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for INTS6L-AS1 Gene

Domains & Families for INTS6L-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for INTS6L-AS1 Gene

Function for INTS6L-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for INTS6L-AS1 Gene

Localization for INTS6L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for INTS6L-AS1 Gene

Pathways & Interactions for INTS6L-AS1 Gene

SuperPathways for INTS6L-AS1 Gene

No Data Available

Interacting Proteins for INTS6L-AS1 Gene

Gene Ontology (GO) - Biological Process for INTS6L-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for INTS6L-AS1 Gene

Drugs & Compounds for INTS6L-AS1 Gene

No Compound Related Data Available

Transcripts for INTS6L-AS1 Gene

mRNA/cDNA for INTS6L-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for INTS6L-AS1 Gene

No ASD Table

Relevant External Links for INTS6L-AS1 Gene

GeneLoc Exon Structure for
INTS6L-AS1
ECgene alternative splicing isoforms for
INTS6L-AS1

Expression for INTS6L-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for INTS6L-AS1 Gene

Orthologs for INTS6L-AS1 Gene

Evolution for INTS6L-AS1 Gene

ENSEMBL:
Gene Tree for INTS6L-AS1 (if available)
TreeFam:
Gene Tree for INTS6L-AS1 (if available)

No data available for Orthologs for INTS6L-AS1 Gene

Paralogs for INTS6L-AS1 Gene

No data available for Paralogs for INTS6L-AS1 Gene

Variants for INTS6L-AS1 Gene

Sequence variations from dbSNP and Humsavar for INTS6L-AS1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1002619335 -- 135,521,835(+) CTGGG(C/T)TCCTC intron-variant, upstream-variant-2KB
rs1006464864 -- 135,521,424(+) GCGGG(A/G)CGGGC intron-variant, upstream-variant-2KB
rs1007530789 -- 135,519,851(+) CAGCT(A/G)TGATG downstream-variant-500B, upstream-variant-2KB
rs1008082452 -- 135,520,317(+) ATCTG(A/C)TTCTG nc-transcript-variant, upstream-variant-2KB
rs1011628214 -- 135,522,426(+) GTGAG(C/G)AGATA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for INTS6L-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2758895 CNV gain+loss 17122850
nsv522205 CNV gain 19592680

Relevant External Links for INTS6L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
INTS6L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for INTS6L-AS1 Gene

Disorders for INTS6L-AS1 Gene

Relevant External Links for INTS6L-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
INTS6L-AS1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
INTS6L-AS1

No disorders were found for INTS6L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for INTS6L-AS1 Gene

Publications for INTS6L-AS1 Gene

No publications were found for INTS6L-AS1 Gene.

Products for INTS6L-AS1 Gene

Sources for INTS6L-AS1 Gene

Content
Loading form....