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Aliases for INTS6-AS1 Gene

Subcategory (RNA class) for INTS6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for INTS6-AS1 Gene

  • INTS6 Antisense RNA 1 2 3 5
  • INTS6 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for INTS6-AS1 Gene

Previous GeneCards Identifiers for INTS6-AS1 Gene

  • GC13P052029

Summaries for INTS6-AS1 Gene

GeneCards Summary for INTS6-AS1 Gene

INTS6-AS1 (INTS6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for INTS6-AS1 Gene

Genomics for INTS6-AS1 Gene

Regulatory Elements for INTS6-AS1 Gene

Enhancers for INTS6-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G051450 1.4 ENCODE dbSUPER 0.7 +0.7 691 5.6 CREB3L1 MLX ZFP64 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 ZFP41 SERPINE3 ENSG00000231856 DHRS12 MRPS31P5 INTS6-AS1 RPS4XP16
GH13G051397 1.1 Ensembl ENCODE 0.2 -54.9 -54873 0.6 ELF3 PKNOX1 FOXA2 ZSCAN4 ARID4B ZNF2 RAD21 ZNF366 CREM MIXL1 DHRS12 ENSG00000231856 FAM124A GC13M051362 INTS6-AS1
GH13G051425 0.7 ENCODE 0.3 -26.6 -26602 1.3 MAX ZIC2 RAD21 YY1 GLIS2 ZNF600 ZNF652 EGR2 CEBPB REST ENSG00000231856 DHRS12 FAM124A NEK5 INTS6-AS1 GC13M051362
GH13G051435 0.5 ENCODE 0.4 -17.2 -17168 0.1 CTCF ZNF654 ZNF362 SMC3 RAD21 ENSG00000231856 DHRS12 INTS6-AS1 GC13M051362
GH13G051421 0.5 ENCODE 0.3 -31.1 -31076 0.5 JUND ATF3 FEZF1 ZBTB33 RAD21 ENSG00000231856 DHRS12 INTS6-AS1 GC13M051362
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around INTS6-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for INTS6-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000062995 433 3601 MLX ZFP64 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 ZNF610 GLIS1

Genomic Location for INTS6-AS1 Gene

Chromosome:
13
Start:
51,452,367 bp from pter
End:
51,552,364 bp from pter
Size:
99,998 bases
Orientation:
Plus strand

Genomic View for INTS6-AS1 Gene

Genes around INTS6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
INTS6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for INTS6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for INTS6-AS1 Gene

Proteins for INTS6-AS1 Gene

Post-translational modifications for INTS6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for INTS6-AS1 Gene

Domains & Families for INTS6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for INTS6-AS1 Gene

Function for INTS6-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for INTS6-AS1 Gene

Localization for INTS6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for INTS6-AS1 Gene

Pathways & Interactions for INTS6-AS1 Gene

SuperPathways for INTS6-AS1 Gene

No Data Available

Interacting Proteins for INTS6-AS1 Gene

Gene Ontology (GO) - Biological Process for INTS6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for INTS6-AS1 Gene

Transcripts for INTS6-AS1 Gene

mRNA/cDNA for INTS6-AS1 Gene

(5) Additional mRNA sequences :
(30) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for INTS6-AS1 Gene

INTS6 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for INTS6-AS1 Gene

No ASD Table

Relevant External Links for INTS6-AS1 Gene

GeneLoc Exon Structure for
INTS6-AS1
ECgene alternative splicing isoforms for
INTS6-AS1

Expression for INTS6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for INTS6-AS1 Gene

SOURCE GeneReport for Unigene cluster for INTS6-AS1 Gene:

Hs.594897
genes like me logo Genes that share expression patterns with INTS6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for INTS6-AS1 Gene

Orthologs for INTS6-AS1 Gene

Evolution for INTS6-AS1 Gene

ENSEMBL:
Gene Tree for INTS6-AS1 (if available)
TreeFam:
Gene Tree for INTS6-AS1 (if available)

No data available for Orthologs for INTS6-AS1 Gene

Paralogs for INTS6-AS1 Gene

No data available for Paralogs for INTS6-AS1 Gene

Variants for INTS6-AS1 Gene

Sequence variations from dbSNP and Humsavar for INTS6-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000879874 -- 51,453,011(+) CCACT(C/T)TCTCA nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000943704 -- 51,453,158(+) CCTTT(C/T)ATTAG nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001083328 -- 51,453,310(+) GCCGG(A/G)CTGCG upstream-variant-2KB
rs1001443776 -- 51,452,536(+) TGGCC(A/G)GGGAC intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001780485 -- 51,451,531(+) CGAAT(C/G)TGACA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for INTS6-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3892343 CNV gain 25118596
nsv1069754 CNV deletion 25765185
nsv561618 CNV loss 21841781

Relevant External Links for INTS6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
INTS6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for INTS6-AS1 Gene

Disorders for INTS6-AS1 Gene

Relevant External Links for INTS6-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
INTS6-AS1

No disorders were found for INTS6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for INTS6-AS1 Gene

Publications for INTS6-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for INTS6-AS1 Gene

Sources for INTS6-AS1 Gene

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