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Aliases for INTS6-AS1 Gene

Subcategory (RNA class) for INTS6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for INTS6-AS1 Gene

  • INTS6 Antisense RNA 1 2 3 5
  • INTS6 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for INTS6-AS1 Gene

Previous GeneCards Identifiers for INTS6-AS1 Gene

  • GC13P052029

Summaries for INTS6-AS1 Gene

GeneCards Summary for INTS6-AS1 Gene

INTS6-AS1 (INTS6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for INTS6-AS1 Gene

Genomics for INTS6-AS1 Gene

Regulatory Elements for INTS6-AS1 Gene

Enhancers for INTS6-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F051450 0.5 ENCODE 0.8 +0.7 691 5.6 PKNOX1 MLX ZFP64 ARID4B SIN3A ZNF2 YY1 ZNF143 ZNF207 ZNF263 SERPINE3 ALG11 CCDC70 LOC103191607 RPS4XP16 DHRS12 ENSG00000231856 INTS6-AS1
GH13F051422 0.2 Ensembl 0.3 -29.9 -29867 0.2 CTCF ZBTB11 REST ZIC2 GLIS2 NCOR1 GLIS1 KDM1A PRDM1 MGA DHRS12 ENSG00000231856 INTS6-AS1 GC13M051362
GH13F051425 0.2 ENCODE 0.3 -26.6 -26602 1.3 CEBPB REST ZIC2 RAD21 YY1 GLIS2 SSRP1 ATF3 CEBPA HMBOX1 DHRS12 ENSG00000231856 FAM124A NEK5 INTS6-AS1 GC13M051362
GH13F051435 0.2 ENCODE 0.3 -17.2 -17168 0.1 CTCF ZNF362 ZNF654 SMC3 RAD21 DHRS12 ENSG00000231856 INTS6-AS1 GC13M051362
GH13F051421 1.2 Ensembl ENCODE 0.3 -31.1 -31067 0.6 ATF3 FEZF1 ZBTB33 RAD21 DHRS12 ENSG00000231856 INTS6-AS1 GC13M051362
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around INTS6-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for INTS6-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000516347 433 4001 PKNOX1 MLX ZFP64 ARID4B SIN3A ZNF2 YY1 ZNF143 ZNF207 ZNF263

Genomic Location for INTS6-AS1 Gene

Chromosome:
13
Start:
51,452,367 bp from pter
End:
51,552,364 bp from pter
Size:
99,998 bases
Orientation:
Plus strand

Genomic View for INTS6-AS1 Gene

Genes around INTS6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
INTS6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for INTS6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for INTS6-AS1 Gene

Proteins for INTS6-AS1 Gene

Post-translational modifications for INTS6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for INTS6-AS1 Gene

Domains & Families for INTS6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for INTS6-AS1 Gene

Function for INTS6-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for INTS6-AS1 Gene

Localization for INTS6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for INTS6-AS1 Gene

Pathways & Interactions for INTS6-AS1 Gene

SuperPathways for INTS6-AS1 Gene

No Data Available

Interacting Proteins for INTS6-AS1 Gene

Gene Ontology (GO) - Biological Process for INTS6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for INTS6-AS1 Gene

Transcripts for INTS6-AS1 Gene

mRNA/cDNA for INTS6-AS1 Gene

(5) Additional mRNA sequences :
(30) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for INTS6-AS1 Gene

INTS6 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for INTS6-AS1 Gene

No ASD Table

Relevant External Links for INTS6-AS1 Gene

GeneLoc Exon Structure for
INTS6-AS1
ECgene alternative splicing isoforms for
INTS6-AS1

Expression for INTS6-AS1 Gene

mRNA expression in normal human tissues for INTS6-AS1 Gene

SOURCE GeneReport for Unigene cluster for INTS6-AS1 Gene:

Hs.594897
genes like me logo Genes that share expression patterns with INTS6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for INTS6-AS1 Gene

Orthologs for INTS6-AS1 Gene

Evolution for INTS6-AS1 Gene

ENSEMBL:
Gene Tree for INTS6-AS1 (if available)
TreeFam:
Gene Tree for INTS6-AS1 (if available)

No data available for Orthologs for INTS6-AS1 Gene

Paralogs for INTS6-AS1 Gene

No data available for Paralogs for INTS6-AS1 Gene

Variants for INTS6-AS1 Gene

Sequence variations from dbSNP and Humsavar for INTS6-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs112515315 -- 51,451,789(+) GCGAC(G/T)CCGCG intron-variant, upstream-variant-2KB
rs112642790 -- 51,455,182(+) TTCCC(A/G)ACATT intron-variant, upstream-variant-2KB
rs114210392 -- 51,454,381(+) TTGTT(C/G)TTTAT nc-transcript-variant, upstream-variant-2KB
rs1143538 -- 51,452,590(-) GCCGG(C/T)GCCTC intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1143539 -- 51,452,587(-) GGCGC(C/T)TCCAC intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for INTS6-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3892343 CNV gain 25118596
nsv1069754 CNV deletion 25765185
nsv561618 CNV loss 21841781

Relevant External Links for INTS6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
INTS6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for INTS6-AS1 Gene

Disorders for INTS6-AS1 Gene

Relevant External Links for INTS6-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
INTS6-AS1

No disorders were found for INTS6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for INTS6-AS1 Gene

Publications for INTS6-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for INTS6-AS1 Gene

Sources for INTS6-AS1 Gene

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