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Aliases for INE1 Gene

Subcategory (RNA class) for INE1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for INE1 Gene

  • Inactivation Escape 1 (Non-Protein Coding) 2 3 5
  • Non-Protein Coding RNA 10 2
  • NCRNA00010 3
  • DXS6974E 4

External Ids for INE1 Gene

Previous GeneCards Identifiers for INE1 Gene

  • GC0XU990270
  • GC0XP045890
  • GC0XP046110
  • GC0XP046820
  • GC0XP046950
  • GC0XP047064
  • GC0XP044774

Summaries for INE1 Gene

Entrez Gene Summary for INE1 Gene

  • X chromosome inactivation provides dosage compensation for the expression level of X-linked genes from the single X in males and the two in females. This X chromosome gene is intronless and was identified because its transcription escapes X inactivation in females. This gene does not make a protein.[provided by RefSeq, May 2010]

GeneCards Summary for INE1 Gene

INE1 (Inactivation Escape 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for INE1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for INE1 Gene

Genomics for INE1 Gene

Regulatory Elements for INE1 Gene

Enhancers for INE1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH047216 1.4 ENCODE dbSUPER 42.9 +13.7 13671 5 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 YY1 ZNF207 ZNF143 ZNF548 LOC100113397 ZNF81 INE1 LINC01560 ZNF182 ZNF674-AS1 UBA1 RBM10 USP11 ZNF674
GH0XH047231 1.6 Ensembl ENCODE dbSUPER 27.5 +29.2 29170 4 SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 ZNF143 SP3 ZHX2 REST INE1 ZNF81 SNORA11C LOC100419232 UXT WASF4P UBA1 USP11 GC0XP047244 PIR42211
GH0XH047128 1.2 Ensembl ENCODE 29.9 -75.2 -75248 2 PKNOX1 ATF1 ARID4B SIN3A FEZF1 DMAP1 BRCA1 ZNF2 YY1 TCF12 INE1 LOC100113397 ZNF81 ZNF182 UBA1 NUS1P1 ARAF RBM10 GC0XP047146 LOC105373193
GH0XH048020 1.5 FANTOM5 Ensembl ENCODE 17.4 +816.6 816578 2 TBP PKNOX1 FOXA2 ZNF76 KLF17 SIN3A RAD21 BRCA1 ZNF2 YY1 ENSG00000204620 INE1 FTSJ1 ZNF81 RBM3 ZNF630 ZNF182 NUS1P1 UBA1 PQBP1
GH0XH046544 1.1 ENCODE 23.5 -658.4 -658373 4 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 LOC100113397 LINC01560 INE1 ZNF674-AS1 LOC392452 SLC9A7 NUS1P1 ZNF41 KRBOX4 ENSG00000277721
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around INE1 on UCSC Golden Path with GeneCards custom track

Genomic Location for INE1 Gene

Chromosome:
X
Start:
47,204,848 bp from pter
End:
47,205,865 bp from pter
Size:
1,018 bases
Orientation:
Plus strand

Genomic View for INE1 Gene

Genes around INE1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
INE1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for INE1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for INE1 Gene

Proteins for INE1 Gene

  • Protein details for INE1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O15225-INE1_HUMAN
    Recommended name:
    Putative inactivation escape 1 protein
    Protein Accession:
    O15225
    Secondary Accessions:
    • Q5JRR7
    • Q6NSX0

    Protein attributes for INE1 Gene

    Size:
    51 amino acids
    Molecular mass:
    5365 Da
    Quaternary structure:
    No Data Available

neXtProt entry for INE1 Gene

Post-translational modifications for INE1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for INE1 Gene

Domains & Families for INE1 Gene

Protein Domains for INE1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for INE1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with INE1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for INE1 Gene

Function for INE1 Gene

Molecular function for INE1 Gene

GENATLAS Biochemistry:
EST transcript from a gene escaping inactivation

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for INE1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for INE1 Gene

Localization for INE1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for INE1 gene
Compartment Confidence
extracellular 3
mitochondrion 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for INE1 Gene

Pathways & Interactions for INE1 Gene

No Data Available

Interacting Proteins for INE1 Gene

Gene Ontology (GO) - Biological Process for INE1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for INE1 Gene

Drugs & Compounds for INE1 Gene

No Compound Related Data Available

Transcripts for INE1 Gene

mRNA/cDNA for INE1 Gene

(1) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(826) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for INE1 Gene

Inactivation escape 1 (non-protein coding):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for INE1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for INE1 Gene

No ASD Table

Relevant External Links for INE1 Gene

GeneLoc Exon Structure for
INE1
ECgene alternative splicing isoforms for
INE1

Expression for INE1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for INE1 Gene

NURSA nuclear receptor signaling pathways regulating expression of INE1 Gene:

INE1

SOURCE GeneReport for Unigene cluster for INE1 Gene:

Hs.657350

mRNA Expression by UniProt/SwissProt for INE1 Gene:

O15225-INE1_HUMAN
Tissue specificity: Highly expressed in pancreas, heart and liver followed by brain, placenta, lung, skeletal muscle and kidney. Mostly expressed in females.
genes like me logo Genes that share expression patterns with INE1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for INE1 Gene

Orthologs for INE1 Gene

Evolution for INE1 Gene

ENSEMBL:
Gene Tree for INE1 (if available)
TreeFam:
Gene Tree for INE1 (if available)

No data available for Orthologs for INE1 Gene

Paralogs for INE1 Gene

No data available for Paralogs for INE1 Gene

Variants for INE1 Gene

Sequence variations from dbSNP and Humsavar for INE1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs80356545 Pathogenic 47,205,989(+) CAAAT(G/T)AATCC intron-variant, downstream-variant-500B, reference, missense
rs80356546 Pathogenic 47,206,011(+) TGACA(A/G)GCCAC intron-variant, downstream-variant-500B, reference, missense
rs80356547 Pathogenic 47,206,103(+) GACAA(C/T)GTGGA intron-variant, downstream-variant-500B, reference, synonymous-codon
rs147825775 Likely benign 47,203,005(+) TGTCT(C/T)CCTGA upstream-variant-2KB, reference, synonymous-codon
rs369843264 Likely benign 47,202,951(+) TGCTC(C/T)GGGAA upstream-variant-2KB, reference, synonymous-codon

Relevant External Links for INE1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
INE1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for INE1 Gene

Disorders for INE1 Gene

Relevant External Links for INE1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
INE1

No disorders were found for INE1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for INE1 Gene

Publications for INE1 Gene

  1. Escape from X inactivation of two new genes associated with DXS6974E and DXS7020E. (PMID: 9244435) Esposito T … Forabosco A (Genomics 1997) 2 3 4 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 4 60
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 60
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for INE1 Gene

Sources for INE1 Gene

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