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Aliases & Descriptions for IDO1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CD107B 2 | | EC 1.13.11.52 3 | | IDO 2, 3, 5 | | INDO 2, 5 |
| | | Descriptions |
|---|
| Indoleamine-pyrrole 2,3-dioxygenase 3 | | indole 2,3-dioxygenase 2 | | indoleamine 2,3-dioxygenase 1 2 | | indoleamine-pyrrole 2,3 dioxygenase 1, 2 |
|
| | Search outside databases for aliases for IDO1 gene |
Summaries for IDO1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for IDO1: Gamma-interferon (IFNG; MIM 147570) has an antiproliferative effect on many tumor cells and inhibits intracellular pathogens such as Toxoplasma and Chlamydia, at least partly because of the induction of indoleamine 2,3-dioxygenase (INDO; EC 1.13.11.52). This enzyme catalyzes the degradation of the essential amino acid L-tryptophan to N-formyl-kynurenine.[supplied by OMIM] UniProtKB/Swiss-Prot: I23O_HUMAN, P14902Function: Catalyzes the cleavage of the pyrrol ring of tryptophan and incorporates both atoms of a molecule of oxygenGene Wiki entry for IDO1 (Indoleamine_2%2C3-dioxygenase) |
Genomic Location for IDO1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 8p12-p11 Ensembl cytogenetic band: 8p11.22 HGNC cytogenetic band: 8p12-p11IDO1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 8 GeneLoc Exon Structure GeneLoc location for GC08P039891:
(about GC identifiers)
Start:
|
39,890,485 bp from pter |
End:
|
39,905,107 bp from pter |
Size:
|
14,623 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000008.9 NT_007995.14
| Proteins for IDO1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: I23O_HUMAN, P14902 (See
protein sequence)Recommended Name: Indoleamine 2,3-dioxygenase Size: 403 amino acids; 45326 Da
Cofactor: Binds 1 heme group per subunit
PDB structure from and Proteopedia :2D0T (3D)
 2D0U (3D)
 REFSEQ proteins: NP_002155.1
ENSEMBL proteins: ENSP00000253513
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for IDO1: Assays for IDO1: | Protein
Domains/ Families for IDO1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P14902
ProtoNet protein and cluster: P14902 1 Blocks protein family: IPB000898 Indoleamine 2,3-dioxygenase
UniProtKB/Swiss-Prot: I23O_HUMAN, P14902Similarity: Belongs to the indoleamine 2,3-dioxygenase family | Gene Function for IDO1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002164
Applied Biosystems Silencer® siRNAs for IDO1
Sigma-Aldrich siRNA for IDO1  Sigma-Aldrich shRNA for IDO1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002164                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002164                                  untagged cDNA clone in CMV expression vector: NM_002164 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002164
UniProtKB/Swiss-Prot: I23O_HUMAN, P14902Function: Catalyzes the cleavage of the pyrrol ring of tryptophan and incorporates both atoms of a molecule of oxygenCatalytic activity: D-tryptophan + O(2) = N-formyl-D-kynurenineCatalytic activity: L-tryptophan + O(2) = N-formyl-L-kynurenineInduction: By interferon gammaEnzyme Number (IUBMB): EC 1.13.11.52 2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ido1):
5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
): About this table | Pathways & Interactions for IDO1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for IDO1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for IDO1 
5/68 Interacting proteins for IDO1 (ENSP000002535133 P149022) via UniProtKB, MINT, and/or STRING (see all 68
)About this table
5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0002666 | positive regulation of T cell tolerance induction |
IEA | -- | | GO:0002678 | positive regulation of chronic inflammatory response |
IEA | -- | | GO:0002830 | positive regulation of T-helper 2 type immune response |
IEA | -- | | GO:0007565 | female pregnancy |
TAS | 9712583 | | GO:0019441 | tryptophan catabolic process to kynurenine |
IEA | -- | About this table
|
Drugs & Compounds for IDO1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for IDO1 10/35 Novoseek chemical compound relationships for IDO1 gene (see all 35
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| indoleamine |
99.04 |
389 |
17942160 (2), 15063631 (2), 16394644 (2), 16686756 (2) (see all 99) |
| kynurenine |
96.96 |
241 |
10756023 (6), 8293279 (5), 19327051 (5), 10731095 (4) (see all 99) |
| 1-methyltryptophan |
94.46 |
59 |
18418598 (5), 16887964 (3), 17605849 (2), 17999277 (2) (see all 23) |
| 1-methyl-d-tryptophan |
90.90 |
14 |
15281097 (1), 17114500 (1), 18832696 (1), 17945538 (1) (see all 8) |
| n-formylkynurenine |
89.26 |
13 |
8288893 (1), 1591013 (1), 15206718 (1), 19275153 (1) (see all 13) |
| neopterin |
82.06 |
17 |
15302611 (1), 17136028 (1), 7790043 (1), 15206718 (1) (see all 16) |
| quinolinic acid |
82.05 |
19 |
17457312 (2), 18063923 (2), 14592780 (1), 18516521 (1) (see all 16) |
| indolamine |
82.02 |
11 |
10206145 (2), 15516717 (1), 19079205 (1), 17157205 (1) (see all 10) |
| 3-hydroxykynurenine |
80.25 |
3 |
10731095 (1), 7617307 (1), 8817290 (1) |
| 4-phenylimidazole |
75.30 |
5 |
18665584 (2), 16477023 (1) |
About this table
|
Transcripts for IDO1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002164
Sigma-Aldrich siRNA for IDO1  Sigma-Aldrich shRNA for IDO1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002164 REFSEQ mRNAs for IDO1 gene: NM_002164.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002164               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002164                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002164                                  untagged cDNA clone in CMV expression vector: NM_002164  Additional cDNA sequence: AK313259.1 AY221100.1 BC027882.1 CR591703.1 CR613807.1 CR614485.1 CR616634.1 CR621546.1 M34455.1 X17668.1 8 DOTS entries: DT.408798 DT.100691410 DT.100788833 DT.65287506 DT.95330370 DT.92018039 DT.92451035 DT.95216114 24/86 AceView cDNA sequences (see all 86
):AY221100 AA478338 BQ007037 CD370496 CA432661 CB529600 CB118974 AL549011 AU137351 AL554455 BC027882 NM_002164 CB217134 X17668 AL545869 CD742761 CR614485 CR616634 CR621546 AL549895 BX113985 CD369108 BE466403 AI308058 Unigene Cluster for IDO1: Indoleamine 2,3-dioxygenase 1 Hs.840 [show with all ESTs]Unigene Representative Sequence: M34455
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000253513
|
Expression for IDO1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| IDO1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for IDO1
1 / 2 5 probe-sets matching IDO1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AGAAGATATA
SOURCE GeneReport for Unigene cluster: Hs.840
|
Orthologs for IDO1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for IDO1 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for IDO1
ENSEMBL Gene Tree for IDO1 | Paralogs for IDO1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for IDO1 gene
- IDO22
|
SNPs/Variants for IDO1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for IDO1 (up to first 250kb)
|
Disorders & Mutations for IDO1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 147435
10/71 Novoseek disease relationships for IDO1 gene (see all 71
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| bladder diseases |
43.23 |
1 |
17537219 (1) |
| toxoplasmosis cerebral |
40.28 |
1 |
8617321 (1) |
| infection chronic |
40.20 |
4 |
17876564 (1), 17671174 (1), 17767193 (1), 19007906 (1) |
| nuclear cataract |
38.19 |
1 |
16897708 (1) |
| autoimmune diseases |
37.72 |
7 |
17430113 (3), 15206723 (1), 18847306 (1), 18660704 (1) (see all 5) |
| tumors |
37.72 |
153 |
14678522 (7), 2116480 (6), 18056175 (6), 15132006 (4) (see all 67) |
| inflammation |
37.41 |
28 |
18547472 (2), 18036645 (2), 18063923 (2), 17136028 (1) (see all 22) |
| immunodeficiency |
36.44 |
9 |
16139256 (1), 17626075 (1), 16902147 (1), 17430111 (1) (see all 8) |
| spontaneous abortion |
34.84 |
11 |
17321596 (3), 16421220 (2), 15206723 (1), 17430108 (1) (see all 5) |
| autoimmunity |
32.97 |
6 |
16476191 (1), 19023117 (1), 17360980 (1), 17767193 (1) |
About this table
|
Medical News for IDO1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for IDO1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/477 PubMed articles for IDO1 gene (see all 477
):- Molecular cloning, sequencing and expression of human interferon- gamma-inducible indoleamine 2,3-dioxygenase cDNA. (PubMed id 2109605)2, 3, 4 Dai W. and Gupta S.L. (1990)
- Crystal structure of human indoleamine 2,3-dioxygenase: catalytic mechanism of O2 incorporation by a heme-containing dioxygenase. (PubMed id 16477023)1, 3, 4 Sugimoto H.... Shiro Y. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Localization of indoleamine 2,3-dioxygenase gene (INDO) to chromosome 8p12-->p11 by fluorescent in situ hybridization. (PubMed id 8404046)2, 3 Najfeld V....Gupta S.L. (1993)
- Gene structure of human indoleamine 2,3-dioxygenase. (PubMed id 1449503)3, 4 Kadoya A.... Kido R. (1992)
- Primary structure of human indoleamine 2,3-dioxygenase deduced from the nucleotide sequence of its cDNA. (PubMed id 2326172)3, 4 Tone S....Kido R. (1990)
- Astrocyte indoleamine 2,3-dioxygenase is induced by the TLR3 ligand poly(I:C): mechanism of induction and role in antiviral response. (PubMed id 17626075)1, 3 Suh H.S....Lee S.C. (2007)
- Indoleamine-dioxygenase is expressed in human decidua at the time maternal tolerance is established. (PubMed id 17321596)1, 3 von Rango U....Classen-Linke I. (2007)
- Der p 1 suppresses indoleamine 2, 3-dioxygenase in dendritic cells from house dust mite-sensitive patients with asthma. (PubMed id 19058839)1, 3 Maneechotesuwan K....Wongkajornsilp A. (2009)
- Cytochrome b5, not superoxide anion radical, is a major reductant of indoleamine 2,3-dioxygenase in human cells. (PubMed id 18299324)1, 3 Maghzal G.J....Stocker R. (2008)
|
Search for IDO1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing IDO1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing IDO1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing IDO1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for IDO1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for IDO1:

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Incremental update: 13 Oct 2009
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