Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

IMPG2 Gene

protein-coding   GIFtS: 50
GCID: GC03M100944

interphotoreceptor matrix proteoglycan 2

 Explore 7 diseases affiliated with
IMPG2 via our new
 Human Malady Compendium 
Biological research products
for IMPG2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Interphotoreceptor Matrix Proteoglycan 21 2     RP562 5
IPM2001 2 3 5     SPACRCAN2
Interphotoreceptor Matrix Proteoglycan Of 200 KDa2 3     Interphotoreceptor Matrix Proteoglycan IPM 2002
Sialoprotein Associated With Cones And Rods Proteoglycan2 3     Spacrcan3
IPM 2002 3     

External Ids:    HGNC: 183621   Entrez Gene: 509392   Ensembl: ENSG000000811487   OMIM: 6070565   UniProtKB: Q9BZV33   

Export aliases for IMPG2 gene to outside databases

Previous GC identifers: GC03M097598 GC03M100372 GC03M102226 GC03M102266 GC03M102428 GC03M098313


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for IMPG2:
The protein encoded by this gene binds chondroitin sulfate and hyaluronan and is a proteoglycan. The encoded protein
plays a role in the organization of the interphotoreceptor matrix and may promote the growth and maintenance of the
light-sensitive photoreceptor outer segment. Defects in this gene are a cause of retinitis pigmentosa type 56 and
maculopathy, IMPG2-related.(provided by RefSeq, Mar 2011)

UniProtKB/Swiss-Prot: IMPG2_HUMAN, Q9BZV3
Function: Chondroitin sulfate- and hyaluronan-binding proteoglycan involved in the organization of interphotoreceptor
matrix; may participate in the maturation and maintenance of the light-sensitive photoreceptor outer segment. Binds
heparin




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000003.11  NC_018914.1  NT_005612.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the IMPG2 gene promoter:
         Oct-B1   E2F-3a   E2F-4   E2F-5   oct-B2   E2F-2   E2F   E2F-1   POU2F1   POU2F1a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidIMPG2 promoter sequence
   Search SABiosciences Chromatin IP Primers for IMPG2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IMPG2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q12.2-q12.3   Ensembl cytogenetic band:  3q12.3   HGNC cytogenetic band: 3q12.2-q12.3

IMPG2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
IMPG2 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03M100944:  view genomic region     (about GC identifiers)

Start:
100,945,288 bp from pter      End:
101,039,419 bp from pter
Size:
94,132 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: IMPG2_HUMAN, Q9BZV3 (See protein sequence)
Recommended Name: Interphotoreceptor matrix proteoglycan 2 precursor  
Size: 1241 amino acids; 138621 Da
Subcellular location: Membrane; Single-pass type I membrane protein (Potential)
Secondary accessions: A8MWT5 Q9UKD4 Q9UKK5

Explore the universe of human proteins at neXtProt for IMPG2: NX_Q9BZV3

Post-translational modifications:

  • Highly glycosylated (N- and O-linked carbohydrates)1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9BZV3

  • IMPG2 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_057331.2  
    ENSEMBL proteins: 
     ENSP00000193391  

    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    Browse OriGene Protein Over-expression Lysates
    OriGene Custom Protein Services for IMPG2 
    GenScript Custom Purified and Recombinant Proteins Services for IMPG2
    Novus Biologicals IMPG2 Protein
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for IMPG2

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005578proteinaceous extracellular matrix TAS10702256
    GO:0016021integral to membrane IEA--


    IMPG2 for ontologies           About GeneDecksing



    IMPG2 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for IMPG2 
    GenScript Custom Superior Antibodies Services for IMPG2
    Novus Biologicals IMPG2 Antibodies
    Search for Antibodies for IMPG2 at Abcam  
    Uscn Antibodies for IMPG2
    Search ThermoFisher Antibodies for IMPG2

    Assay Products for IMPG2: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for IMPG2
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for IMPG2


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    IMPG2 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR000082 SEA
     IPR000742 EG-like_dom
     IPR013032 EGF-like_CS

    Graphical View of Domain Structure for InterPro Entry Q9BZV3

    ProtoNet protein and cluster: Q9BZV3

    1 Blocks protein family: IPB000082 SEA domain

    UniProtKB/Swiss-Prot: IMPG2_HUMAN, Q9BZV3
    Similarity: Contains 2 EGF-like domains
    Similarity: Contains 2 SEA domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: IMPG2_HUMAN, Q9BZV3
    Function: Chondroitin sulfate- and hyaluronan-binding proteoglycan involved in the organization of interphotoreceptor
    matrix; may participate in the maturation and maintenance of the light-sensitive photoreceptor outer segment. Binds
    heparin

    miRNA
    Products:
        
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat IMPG2
    8/52 QIAGEN miScript miRNA Assays for microRNAs that regulate IMPG2 (see all 52):
    hsa-miR-607 hsa-miR-520e hsa-miR-302d hsa-miR-136 hsa-let-7d hsa-miR-488 hsa-miR-570 hsa-let-7g
    SwitchGear 3'UTR luciferase reporter plasmidIMPG2 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for IMPG2 (see all 7)
    OriGene shRNA RFP: IMPG2
    OriGene siRNA: IMPG2
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat IMPG2

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for IMPG2

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for IMPG2 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for IMPG2
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: IMPG2 (NM_016247)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for IMPG2
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat IMPG2 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for IMPG2
    Search LifeMap BioReagents cell lines for IMPG2

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IMPG2

    Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004872receptor activity ----
    GO:0005201extracellular matrix structural constituent TAS10702256
    GO:0005540hyaluronic acid binding TAS10702256
    GO:0008201heparin binding IEA--


    IMPG2 for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for IMPG2:
     Decreased POU5F1-GFP protein e 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Integrin Pathway
    Integrin Pathway1.00
    UPA-UPAR Pathway0.51
    FAK1 Signaling0.67
    Transendothelial Migration of Leukocytes0.38
    GnRH Signaling0.56
    Inhibition of Angiogenesis by TSP10.37
    2Rho Family GTPases
    Rho Family GTPases1.00
    MAPK Signaling0.51
    ERK Signaling0.61
    ILK Signaling0.45
    Molecular Mechanisms of Cancer0.51
    3PTEN Pathway
    PTEN Pathway1.00
    Phospholipase-C Pathway0.56

    5/13 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for IMPG2 (see all 13)
        MAPK Signaling
    Molecular Mechanisms of Cancer
    PTEN Pathway
    Transendothelial Migration of Leukocytes
    UPA-UPAR Pathway


    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for IMPG2

    1 Interacting protein for IMPG2 (Q9BZV33) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PPP2CAP677753I2D: score=1 
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007601visual perception TAS10702256


    IMPG2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for IMPG2

    1 HMDB Compound for IMPG2    About this table
    CompoundSynonyms CAS #PubMed Ids
    Hyaluronanhyaluronic acid (see all 13)9004-61-9--
    Search CenterWatch for drugs/clinical trials and news about IMPG2 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for IMPG2 gene: 
    NM_016247.3  

    Unigene Cluster for IMPG2:

    Interphotoreceptor matrix proteoglycan 2
    Hs.209249  [show with all ESTs]
    Unigene Representative Sequence: NM_016247
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000193391(uc011bhe.2 uc003duq.2 uc010hpj.1)

    miRNA
    Products:
         
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat IMPG2
    8/52 QIAGEN miScript miRNA Assays for microRNAs that regulate IMPG2 (see all 52):
    hsa-miR-607 hsa-miR-520e hsa-miR-302d hsa-miR-136 hsa-let-7d hsa-miR-488 hsa-miR-570 hsa-let-7g
    SwitchGear 3'UTR luciferase reporter plasmidIMPG2 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for IMPG2 (see all 7)
    OriGene shRNA RFP: IMPG2
    OriGene siRNA: IMPG2
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat IMPG2
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for IMPG2 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for IMPG2
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: IMPG2 (NM_016247)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for IMPG2
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat IMPG2 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for IMPG2
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat IMPG2
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IMPG2
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IMPG2

    Additional cDNA sequence: 

    AB593127.1 AF157624.1 AF173155.1 AF319972.1 BC144092.1 

    5 DOTS entries:

    DT.101955084  DT.97839976  DT.95189990  DT.425499  DT.100739143 

    24/35 AceView cDNA sequences (see all 35):

    BX510203 BX953412 BM799621 AL713046 BX642541 AF173155 BU167472 BX953290 
    AA736980 BX953286 BM929973 NM_016247 AL712421 BX283908 BX954997 AF157624 
    BX491222 BX509854 AA721009 BX953550 AA364834 AA744481 AA815118 AF319972 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    IMPG2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GAGAAGTCTG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See IMPG2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for IMPG2

    SOURCE GeneReport for Unigene cluster: Hs.209249

    UniProtKB/Swiss-Prot: IMPG2_HUMAN, Q9BZV3
    Tissue specificity: Expressed in the retina. Expressed by photoreceptors of the interphotoreceptor matrix (IPM)
    surrounding both rods and cones. IPM occupies the subretinal space between the apices of the retinal pigment
    epithelium and the neural retina. Detected in the pineal gland

        SABiosciences Custom PCR Arrays for IMPG2
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for IMPG2
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat IMPG2
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IMPG2
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IMPG2
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IMPG2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for IMPG2 gene from 4/10 species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Impg21 , 5 interphotoreceptor matrix proteoglycan 21, 5 81.46(n)1
    72.73(a)1
      16 (33.91 cM)5
    2242241  NM_174876.31  NP_777365.21 
     562043135 
    chicken
    (Gallus gallus)
    Aves IMPG21 interphotoreceptor matrix proteoglycan 2 61.76(n)
    52.41(a)
      418393  NM_001044639.1  NP_001038104.1 
    lizard
    (Anolis carolinensis)
    Reptilia IMPG26
    --
    46(a)
    1 ↔ 1
    3(173699864-173771539)
    zebrafish
    (Danio rerio)
    Actinopterygii impg26
    si:ch211-88n13.36
    (see all 4)
    si:ch211-88n13.3
    (see all 4)
    67(a)
    36(a)
    (see all 4)
    many → 1
    many → 1
    (see all 4)
    22(30302867-30339587)
    9(31213330-31226051)


    ENSEMBL Gene Tree for IMPG2 (if available)
    TreeFam Gene Tree for IMPG2 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for IMPG2 gene
    IMPG12  
    1 SIMAP similar gene for IMPG2 using alignment to 3 protein entries:     IMPG2_HUMAN (see all proteins):
    DKFZp686K0887

    IMPG2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1584 NCBI SNPs in IMPG2 are shown (see all 1584    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs2018935451,2
    Cpathogenic136948402(+) CCAAAA/GAGTCC 2 L F mis10--------
    rs1167137081,2
    C,F,--98309666(+) TTTATT/GTCTTC 1 -- ds50011Minor allele frequency- G:0.04WA 118
    rs596522221,2
    C,F,--98309701(+) CATTTC/TGCCTC 1 -- ds50015Minor allele frequency- T:0.06WA NA 244
    rs586765541,2
    C,F,--98309778(+) TTCCAT/GTCCTA 1 -- ds50014Minor allele frequency- G:0.08WA CSA 124
    rs119280161,2
    H--98309965(+) AAAGAC/TTTTCA 1 -- ds50010--------
    rs1120624761,2
    C,F,--98311452(+) GATCAC/TCTGAG 1 -- ut312Minor allele frequency- T:0.50WA CSA 4
    rs613602591,2
    C--98311538(+) TGGGCG/ATGGTG 1 -- ut311Minor allele frequency- A:0.50WA 2
    rs776716341,2
    C,--98311616(+) AGGTTG/TCCAGG 1 -- ut311Minor allele frequency- T:0.50WA 2
    rs783911391,2
    F,--98311843(+) TACATC/ATGTAA 1 -- ut311Minor allele frequency- A:0.02NA 120
    rs1126705041,2
    --98311848(+) CTGTAG/AAACAC 1 -- ut311Minor allele frequency- A:0.00CSA 1

    HapMap Linkage Disequilibrium report for IMPG2 (100945288 - 101039419 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for IMPG2: --
    Human Gene Mutation Database (HGMD): IMPG2

    Locus Specific Mutation Databases (LSDB): IMPG2

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing IMPG2
    DNA2.0 Custom Variant and Variant Library Synthesis for IMPG2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    IMPG2 for disorders           About GeneDecksing

    OMIM gene information: 607056   
    OMIM disorders: 613581  
    UniProtKB/Swiss-Prot: IMPG2_HUMAN, Q9BZV3
  • Defects in IMPG2 are the cause of retinitis pigmentosa type 56 (RP56) [MIM:613581]. RP56 is a retinal
  • dystrophy belonging to the group of pigmentary retinopathies. Retinitis pigmentosa is characterized by retinal pigment
    deposits visible on fundus examination and primary loss of rod photoreceptor cells followed by secondary loss of cone
    photoreceptors. Patients typically have night vision blindness and loss of midperipheral visual field. As their
    condition progresses, they lose their far peripheral visual field and eventually central vision as well
  • Defects in IMPG2 are the cause of maculopathy IMPG2-related (MACLP-IMPG2) [MIM:613581]. MACLP-IMPG2 is a mild
  • maculopathy characterized by full-field electroretinogram responses within normal limits, normal color vision,
    elevation of the photoreceptor layer in the foveal region and mild nuclear sclerosis

    7 diseases for IMPG2:    About MalaCards
    retinitis pigmentosa    maculopathy    age related macular degeneration    retinitis
    macular degeneration    pigmentary retinopathy    blindness

    Human Genome Epidemiology (HuGE) Navigator: IMPG2 (1 document)

    Export disorders for IMPG2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for IMPG2 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with IMPG2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Molecular characterization and genomic mapping of human IPM 200, a second member of a novel family of proteoglycans. (PubMed id 10542133)1, 2, 3 Kuehn M.H. and Hageman G.S. (1999)
    2. SPACRCAN, a novel human interphotoreceptor matrix hyaluronan-binding proteoglycan synthesized by photoreceptors and pinealocytes. (PubMed id 10702256)1, 2, 9 Acharya S.... Hollyfield J.G. (2000)
    3. Organization of the human IMPG2 gene and its evaluation as a candidate gene in age-related macular degeneration and other retinal degenerative disorders. (PubMed id 11726612)1, 2, 9 Kuehn M.H.... Hageman G.S. (2001)
    4. Mutations in IMPG2, encoding interphotoreceptor matri x proteoglycan 2, cause autosomal-recessive retinitis pigmentosa. (PubMed id 20673862)1, 2 Bandah-Rozenfeld D....den Hollander A.I. (2010)
    5. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PubMed id 21697133)1 Oshikawa M.... Kato S. (2011)
    6. The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997)2 Muzny D.M....Gibbs R.A. (2006)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    8. Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)1 Bonaldo M.F.... Soares M.B. (1996)
    9. Retinitis Pigmentosa Overvi ew (PubMed id 20301590)1 Pagon R.A. and Daiger S.P. (1993)
    10. SPACRCAN in the interphotoreceptor matrix of the mouse retina: molecular, developmental and promoter analysis. (PubMed id 12589770)9 Chen Q....Hollyfield J.G. (2003)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 50939 HGNC: 18362 AceView: IMPG2 Ensembl:ENSG00000081148 euGenes: HUgn50939
    ECgene: IMPG2 H-InvDB: IMPG2

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for IMPG2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for IMPG2 gene:
    Search GeneIP for patents involving IMPG2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for IMPG2  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for IMPG2   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for IMPG2  
     Browse OriGene Protein Over-expression Lysates   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for IMPG2   Browse 3'-UTR reporter clones for miRNA target validation  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for IMPG2   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for IMPG2  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for IMPG2   OriGene Custom Protein Services for IMPG2  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat IMPG2
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing IMPG2
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IMPG2
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat IMPG2
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IMPG2
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IMPG2
     GenScript Custom Purified and Recombinant Proteins Services for IMPG2 GenScript cDNA clones with any tag delivered in your preferred vector for IMPG2
     GenScript Custom Assay Services for IMPG2 GenScript Custom Superior Antibodies Services for IMPG2
     GenScript Custom overexpressing Cell Line Services for IMPG2 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in IMPG2 promoter
     Search Chromatin IP Primers for IMPG2
     RT2 qPCR Primer Assay in human, mouse, rat IMPG2
     Search GNC Networks for IMPG2
     SABiosciences PCR Arrays including human, mouse, rat IMPG2
     Search Tocris compounds for IMPG2
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     IMPG2 antibodies
     IMPG2 proteins
     Search for Antibodies for IMPG2 at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for IMPG2
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     IMPG2 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for IMPG2
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IMPG2
     SwitchGear 3'UTR luciferase reporter plasmids for IMPG2
     SwitchGear Promoter luciferase reporter plasmids for IMPG2
     Search ThermoFisher Antibodies for IMPG2
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat IMPG2
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      IMPG2 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 100 solr: 1.4