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IMMT Gene(Protein Coding)

Inner Membrane Mitochondrial Protein

GCID:
GC02M086144
GIFtS:
59
Genes Participants
UDN Logo

Aliases for IMMT Gene

Aliases for IMMT Gene

  • Inner Membrane Mitochondrial Protein 2 3
  • Mitofilin 2 3 4
  • Mitochondrial Inner Membrane Organizing System 2 2 3
  • Cell Proliferation-Inducing Gene 4/52 Protein 3 4
  • Mitochondrial Inner Membrane Protein 3 4
  • P87/89 3 4
  • MINOS2 3 4
  • Mic60 3 4
  • HMP 3 4
  • Inner Membrane Protein, Mitochondrial (Mitofilin) 2
  • Cell Proliferation-Inducing Protein 52 3
  • Inner Membrane Protein, Mitochondrial 5
  • Proliferation-Inducing Gene 4 3
  • Motor Protein 3
  • PIG52 3
  • PIG4 3
  • P87 3
  • P89 3

External Ids for IMMT Gene

Previous GeneCards Identifiers for IMMT Gene

  • GC02M086266
  • GC02M086665
  • GC02M086345
  • GC02M086282

Summaries for IMMT Gene

GeneCards Summary for IMMT Gene

IMMT (Inner Membrane Mitochondrial Protein) is a Protein Coding gene. Diseases associated with IMMT include Gracile Syndrome and Melanoma-Associated Retinopathy. GO annotations related to this gene include poly(A) RNA binding.

UniProtKB/Swiss-Prot for IMMT Gene

  • Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane. Plays an important role in the maintenance of the MICOS complex stability and the mitochondrial cristae morphology (PubMed:22114354, PubMed:25781180).

Gene Wiki entry for IMMT Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IMMT Gene

Genomics for IMMT Gene

Products:

  1. Regulatory Element

Regulatory Elements for IMMT Gene

Enhancers for IMMT Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around IMMT on UCSC Golden Path with GeneCards custom track

Promoters for IMMT Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around IMMT on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the IMMT gene promoter:

Genomic Location for IMMT Gene

Chromosome:
2
Start:
86,143,932 bp from pter
End:
86,195,770 bp from pter
Size:
51,839 bases
Orientation:
Minus strand

Genomic View for IMMT Gene

Genes around IMMT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IMMT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IMMT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for IMMT Gene

Proteins for IMMT Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for IMMT Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q16891-MIC60_HUMAN
    Recommended name:
    MICOS complex subunit MIC60
    Protein Accession:
    Q16891
    Secondary Accessions:
    • B1H0U5
    • B2R5N6
    • Q14539
    • Q15092
    • Q68D41
    • Q69HW5
    • Q6IBL0
    • Q7Z3X1
    • Q8TAJ5
    • Q9P0V2

    Protein attributes for IMMT Gene

    Size:
    758 amino acids
    Molecular mass:
    83678 Da
    Quaternary structure:
    • Component of the mitochondrial contact site and cristae organizing system (MICOS) complex, composed of at least MINOS1/MIC10, CHCHD3/MIC19, CHCHD6/MIC25, APOOL/MIC27, IMMT/MIC60, APOO/MIC23/MIC26 and QIL1/MIC13 (PubMed:25764979, PubMed:25781180). This complex was also known under the names MINOS or MitOS complex. The MICOS complex associates with mitochondrial outer membrane proteins SAMM50, MTX1, MTX2 and DNAJC11, mitochondrial inner membrane protein TMEM11 and with HSPA9 (PubMed:25764979, PubMed:25781180). Found in a complex with CHCHD3/MIC19 and SAMM50 termed mitochondrial intermembrane space bridging (MIB) complex (PubMed:22252321). Interacts with HSPA1A/HSPA1B and OPA1, preferentially with the soluble OPA1 form (By similarity). Interacts with QIL1/MIC13, MINOS1/MIC10, CHCHD3/MIC19, CHCHD6/MIC25, SAMM50 and TMEM11 (PubMed:25997101). Interacts with APOO/MIC23/MIC26 and APOOL/MIC27 (PubMed:25764979, PubMed:25781180).
    SequenceCaution:
    • Sequence=CAH18389.1; Type=Erroneous termination; Positions=759; Note=Translated as stop.; Evidence={ECO:0000305};

    Alternative splice isoforms for IMMT Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for IMMT Gene

Proteomics data for IMMT Gene at MOPED

Protein Expression for IMMT Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for IMMT Gene

  • Ubiquitination at Lys 102, Lys 110, and Lys 451
  • Modification sites at PhosphoSitePlus

Other Protein References for IMMT Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for IMMT Gene

Domains & Families for IMMT Gene

Protein Domains for IMMT Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for IMMT Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q16891

UniProtKB/Swiss-Prot:

MIC60_HUMAN :
  • Belongs to the MICOS complex subunit Mic60 family.
Family:
  • Belongs to the MICOS complex subunit Mic60 family.
genes like me logo Genes that share domains with IMMT: view

No data available for Gene Families for IMMT Gene

Function for IMMT Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for IMMT Gene

UniProtKB/Swiss-Prot Function:
Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane. Plays an important role in the maintenance of the MICOS complex stability and the mitochondrial cristae morphology (PubMed:22114354, PubMed:25781180).

Phenotypes for IMMT Gene

GenomeRNAi human phenotypes for IMMT:
genes like me logo Genes that share phenotypes with IMMT: view

Animal Model Products

miRNA for IMMT Gene

miRTarBase miRNAs that target IMMT

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for IMMT Gene

Localization for IMMT Gene

Subcellular locations from UniProtKB/Swiss-Prot for IMMT Gene

Mitochondrion inner membrane; Single-pass membrane protein. Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for IMMT Gene COMPARTMENTS Subcellular localization image for IMMT gene
Compartment Confidence
mitochondrion 5
cytosol 2
nucleus 2
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for IMMT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IDA 19946888
GO:0016021 integral component of membrane IEA --
GO:0061617 MICOS complex IDA 25781180
genes like me logo Genes that share ontologies with IMMT: view

Pathways & Interactions for IMMT Gene

SuperPathways for IMMT Gene

PathCards logoMore details on SuperPathways for IMMT
No Data Available

Gene Ontology (GO) - Biological Process for IMMT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IMMT Gene

Drugs & Compounds for IMMT Gene

Products:

  1. Drug

(3) Drugs for IMMT Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(3) Additional Compounds for IMMT Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with IMMT: view

Transcripts for IMMT Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for IMMT Gene

(7) REFSEQ mRNAs :
(23) Additional mRNA sequences :
(566) Selected AceView cDNA sequences:
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IMMT Gene

Inner membrane protein, mitochondrial:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for IMMT Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c · 8d · 8e · 8f ^ 9 ^ 10a · 10b · 10c · 10d ^ 11 ^
SP1: - - - - - -
SP2: - - - - - - -
SP3: - - - - - -
SP4: - - - - - - -
SP5: - - - - - - -
SP6: - - - - - - - - - - - - - - - - -
SP7: - - - -
SP8: - - - - - -
SP9: - - - - -
SP10: - - - -
SP11: - - - - - - - - - - -
SP12: - - -
SP13:
SP14: - - - - - - - - - -
SP15: - - -

ExUns: 12a · 12b ^ 13a · 13b ^ 14 ^ 15 ^ 16 ^ 17
SP1:
SP2:
SP3:
SP4:
SP5:
SP6: -
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:

Relevant External Links for IMMT Gene

GeneLoc Exon Structure for
IMMT
ECgene alternative splicing isoforms for
IMMT

Expression for IMMT Gene

Products:

  1. Primer

mRNA expression in normal human tissues for IMMT Gene

mRNA expression in normal human tissues for IMMT Gene
mRNA expression by BioGPS for IMMT GenemRNA expression by GTEx for IMMT Gene

mRNA differential expression in normal tissues according to GTEx for IMMT Gene

This gene is overexpressed in Heart - Left Ventricle (x4.0).

Protein differential expression in normal tissues from HIPED for IMMT Gene

This gene is overexpressed in Brain (6.4) and Heart (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for IMMT Gene



SOURCE GeneReport for Unigene cluster for IMMT Gene Hs.148559

genes like me logo Genes that share expression patterns with IMMT: view

Protein tissue co-expression partners for IMMT Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for IMMT Gene

Orthologs for IMMT Gene

This gene was present in the common ancestor of animals.

Orthologs for IMMT Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
 Mammalia IMMT 35
  • 88.38 (n)
  • 89.86 (a)
IMMT 36
  • 89 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia IMMT 35
  • 91.78 (n)
  • 92.61 (a)
IMMT 36
  • 89 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Immt 35
  • 88.15 (n)
  • 90.09 (a)
Immt 16
Immt 36
  • 90 (a)
 OneToOne
chimpanzee
(Pan troglodytes)
 Mammalia IMMT 35
  • 99.91 (n)
  • 100 (a)
IMMT 36
  • 100 (a)
 OneToOne
rat
(Rattus norvegicus)
 Mammalia Immt 35
  • 86.37 (n)
  • 86.37 (a)
oppossum
(Monodelphis domestica)
 Mammalia IMMT 36
  • 73 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia IMMT 36
  • 70 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves IMMT 35
  • 73.94 (n)
  • 77.46 (a)
IMMT 36
  • 76 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia IMMT 36
  • 73 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia immt 35
  • 66.22 (n)
  • 67.47 (a)
Str.11537 35
African clawed frog
(Xenopus laevis)
 Amphibia Xl.8878 35
zebrafish
(Danio rerio)
 Actinopterygii immt 35
  • 62.67 (n)
  • 62.13 (a)
wufd16e04 35
immt 36
  • 59 (a)
 OneToOne
African malaria mosquito
(Anopheles gambiae)
 Insecta AgaP_AGAP002364 35
  • 43.22 (n)
  • 30.25 (a)
fruit fly
(Drosophila melanogaster)
 Insecta CG6455 35
  • 45.13 (n)
  • 33.6 (a)
CG6455 36
  • 25 (a)
 OneToOne
worm
(Caenorhabditis elegans)
 Secernentea T14G11.3 37
  • 27 (a)
W06H3.1 37
  • 26 (a)
immt-1 35
  • 45.17 (n)
  • 33.28 (a)
immt-1 36
  • 29 (a)
 OneToMany
immt-2 36
  • 26 (a)
 OneToMany
sea squirt
(Ciona savignyi)
 Ascidiacea CSA.5015 36
  • 35 (a)
 OneToOne
Species with no ortholog for IMMT:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for IMMT Gene

ENSEMBL:
Gene Tree for IMMT (if available)
TreeFam:
Gene Tree for IMMT (if available)

Paralogs for IMMT Gene

Pseudogenes.org Pseudogenes for IMMT Gene

genes like me logo Genes that share paralogs with IMMT: view

No data available for Paralogs for IMMT Gene

Variants for IMMT Gene

Sequence variations from dbSNP and Humsavar for IMMT Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
VAR_021530 -
rs35233009 - 86,161,991(-) CGATG(C/T)CCTTC reference, missense, utr-variant-5-prime
rs1803745 -- 86,144,590(-) AACCA(G/T)AAATA reference, missense
rs876242 -- 86,143,889(+) GCTAC(C/T)GCACC downstream-variant-500B
rs918856 -- 86,182,116(-) TTAGG(A/G)GATCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IMMT Gene

Variant ID Type Subtype PubMed ID
esv2751903 CNV Gain 17911159
nsv458563 CNV Gain 19166990
esv2720300 CNV Deletion 23290073
nsv458574 CNV Gain 19166990

Variation tolerance for IMMT Gene

Residual Variation Intolerance Score: 23.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.71; 93.25% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for IMMT Gene

Human Gene Mutation Database (HGMD)
IMMT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IMMT Gene

Disorders for IMMT Gene

MalaCards: The human disease database

(7) MalaCards diseases for IMMT Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
gracile syndrome
  • fellman syndrome
melanoma-associated retinopathy
ornithosis
  • psittacosis
denture stomatitis
  • denture sore mouth
paraneoplastic syndromes
- elite association - COSMIC cancer census association via MalaCards
Search IMMT in MalaCards View complete list of genes associated with diseases

Relevant External Links for IMMT

Genetic Association Database (GAD)
IMMT
Human Genome Epidemiology (HuGE) Navigator
IMMT
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IMMT
genes like me logo Genes that share disorders with IMMT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for IMMT Gene

Publications for IMMT Gene

  1. Mitofilin is a transmembrane protein of the inner mitochondrial membrane expressed as two isoforms. (PMID: 9168817) Gieffers C. … Frey J. (Exp. Cell Res. 1997) 2 3 4 23 67
  2. Pink1 forms a multiprotein complex with Miro and Milton, linking Pink1 function to mitochondrial trafficking. (PMID: 19152501) Weihofen A. … Selkoe D.J. (Biochemistry 2009) 3 23
  3. Mitochondrial localization of PARP-1 requires interaction with mitofilin and is involved in the maintenance of mitochondrial DNA integrity. (PMID: 19762472) Rossi M.N. … Amati P. (J. Biol. Chem. 2009) 3 23
  4. The mitochondrial inner membrane protein mitofilin exists as a complex with SAM50, metaxins 1 and 2, coiled-coil-helix coiled-coil- helix domain-containing protein 3 and 6 and DnaJC11. (PMID: 17624330) Xie J. … Capaldi R.A. (FEBS Lett. 2007) 3 23
  5. The mitochondrial inner membrane protein mitofilin controls cristae morphology. (PMID: 15647377) John G.B. … Zha J. (Mol. Biol. Cell 2005) 3 23

Products for IMMT Gene

Sources for IMMT Gene

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