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Aliases & Descriptions for ILK
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DKFZp686F1765 2 EC 2.7.11.1 3 ILK-1 3 ILK-2 3 ILK1 3 ILK2 3 P59 2 , 5 p59ILK 3
Descriptions 59 kDa serine/threonine-protein kinase 3 integrin-linked kinase 2
Search outside databases for aliases for ILK genePrevious GC identifers: GC11P007367 GC11P007085 GC11P006584 GC11P006590 GC11P006560
Summaries for ILK (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ILK : Transduction of extracellular matrix signals through integrins influences intracellular andextracellular functions, and appears to require interaction of integrin cytoplasmic domains withcellular proteins. Integrin-linked kinase (ILK), interacts with the cytoplasmic domain of beta-1integrin. This gene encodes a serine/threonine protein kinase with 4 ankyrin-like repeats, whichassociates with the cytoplasmic domain of beta integrins and acts as a proximal receptor kinaseregulating integrin-mediated signal transduction. Multiple alternatively spliced transcriptvariants encoding the same protein have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: ILK_HUMAN, Q13418 Function : Receptor-proximal protein kinase regulating integrin-mediated signal transduction. Mayact as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complexILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growthfactor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrinsubstrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3integrin subunit on serine and threonine residues, but also AKT1 and GSK3B
Gene Wiki entry for ILK (Integrin-linked_kinase)
Genomic Location for ILK
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ILK gene Entrez Gene cytogenetic band: 11p15.5-p15.4 Ensembl cytogenetic band: 11p15.4 HGNC cytogenetic band: 11p15.4 ILK Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P006581:
(about GC identifiers )
Start:
6,581,540 bp from pter
End:
6,588,677 bp from pter
Size:
7,138 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000011.8 NT_009237.17 Proteins for ILK
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ILK_HUMAN, Q13418 (See
protein sequence )Recommended Name: Integrin-linked protein kinase Size : 452 amino acids; 51419 Da
Subunit : Interacts with cytoplasmic domain of beta 1 subunit of integrin. Could also interacts withbeta 2, beta 3 and/or beta 5 subunit of integrin. Interacts (via ANK repeats) with LIMS1 andLIMS2. Interacts with parvins and probably TGFB1I1
Subcellular location : Cell junction, focal adhesion. Cell membrane; Peripheral membrane protein;Cytoplasmic side
PDB structure from and Proteopedia : 2KBX (3D)
 3F6Q (3D)
 
Secondary accessions : P57043 Q68DZ3
Post-translational modifications:
Autophosphorylated on serine residues1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001014794.1 NP_001014795.1 NP_004508.1 ENSEMBL proteins: ENSP00000379975 ENSP00000299421 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ILK 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ILK: Assays for ILK:
Protein
Domains/ Families for ILK(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q13418 ProtoNet protein and cluster: Q13418
1 Blocks protein family : IPB002110 Ankyrin repeat signature UniProtKB/Swiss-Prot: ILK_HUMAN, Q13418 Domain : A PH-like domain is involved in phosphatidylinositol phosphate bindingSimilarity : Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase familySimilarity : Contains 5 ANK repeatsSimilarity : Contains 1 protein kinase domain
Gene Function for ILK
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (ILK ) Millipore RNAi Products for the Analysis of ILK Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (ILK )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_004517 Applied Biosystems Silencer ® siRNAs for ILK Sigma-Aldrich siRNA and siRNA Panels for ILK Sigma-Aldrich shRNA Panels and shRNA for ILK Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001014794                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001014794                                  untagged cDNA clones in CMV expression vector (see all 5 ): AL833496  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001014795 UniProtKB/Swiss-Prot: ILK_HUMAN, Q13418 Function : Receptor-proximal protein kinase regulating integrin-mediated signal transduction. Mayact as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complexILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growthfactor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrinsubstrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3integrin subunit on serine and threonine residues, but also AKT1 and GSK3B Catalytic activity : ATP + a protein = ADP + a phosphoproteinEnzyme regulation : Stimulated rapidly but transiently by both cell fibronectin interactions, aswell as by insulin, in a PI3-K-dependent manner, likely via the binding of PtdIns(3,4,5)P3 with aPH-like domain of ILK Enzyme Number (IUBMB): EC 2.7.11.1
Genatlas biochemistry entry for ILK :integrin-linked kinase,59kDa,widely expressed,potential regulator of integrin beta-1 mediatedsignal transduction,overlapping TAF2H by its 3'end (divergently oriented)
9 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Ilk) :5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
About this table
Pathways & Interactions for ILK
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/6 Sigma-Aldrich "Your Favorite Gene" Pathways for ILK (Your Favorite Gene powered by Ingenuity) (see all 6
) Gene Network CentralTM Interacting Genes and Proteins Network for ILK 5/85 Interacting proteins for ILK (Q13418 1 , 2 ENSP00000299421 3 ) via UniProtKB, MINT, and/or STRING (see all 85
)About this table 5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
):
About this table
Drugs & Compounds for ILK (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ILK 10/18 Novoseek chemical compound relationships for ILK gene (see all 18
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
glycogen
60.72
27
12778079 (2), 15735038 (2), 15867245 (2), 16648553 (2) (see all 22 )
phosphatidylinositol
60.55
16
16546979 (1), 17107957 (1), 11313365 (1), 16407822 (1) (see all 15 )
threonine
56.11
21
15722199 (2), 11694518 (1), 17656471 (1), 10341284 (1) (see all 20 )
phosphoinositide
44.65
12
12101188 (4), 17298394 (1), 12637511 (1), 17468516 (1) (see all 8 )
chlorothalonil
38.67
3
2266108 (1)
wortmannin
35.70
2
15044083 (1), 14751515 (1)
tgf beta1
33.28
12
17187779 (7), 16643659 (2)
matrigel
25.08
3
12925691 (1), 16818815 (1)
tyrosine
21.59
10
19302919 (2), 14761892 (2), 19273203 (1), 12824296 (1) (see all 7 )
okadaic acid
5.47
1
10896784 (1)
About this table
Transcripts for ILK(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (ILK ) Millipore RNAi Products for the Analysis of ILK Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (ILK )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_004517 Sigma-Aldrich siRNA and siRNA Panels for ILK Sigma-Aldrich shRNA Panels and shRNA for ILK Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001014794 NM_001014795 NM_004517
REFSEQ mRNAs for ILK gene (3 alternative transcripts): NM_001014794.1 NM_001014795.1 NM_004517.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001014794 NM_001014795 NM_004517
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001014794                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001014794                                  untagged cDNA clones in CMV expression vector (see all 5 ): AL833496  
Additional cDNA sequence: AJ277481.1 AK293474.1 AK296628.1 AK314843.1 BC001554.1 CR407673.1 CR598952.1 CR599632.1 CR601713.1 CR604127.1 CR608758.1 CR611887.1 CR615121.1 CR622983.1 CR624967.1 CR625625.1 CR625972.1 CR749220.1 U40282.1
24/31 DOTS entries (see all 31
): DT.92447057 DT.92447059 DT.452885 DT.100038213 DT.100886845 DT.95173144 DT.100886859 DT.95272900 DT.97802133 DT.100886848 DT.70101889 DT.95272905 DT.100886863 DT.100886855 DT.120709573 DT.449776 DT.100886843 DT.100886846 DT.100886862 DT.120709433 DT.100886860 DT.100886865 DT.100886868 DT.100886870
24/522 AceView cDNA sequences (see all 522
):AL555417 CR625972 CD515828 BQ222152 BG983192 CR625625 BU660724 BU734905 CR615121 BQ931548 CR608758 BM765458 BU177774 BQ672915 BG998721 BM705618 CA306218 BQ721237 CN482888 BQ936739 BU615476 BG983184 BU500956 CR604127
highest scoring ESTs for ILK :U40282 AA035185 AA035186 AA084545 AA088224 AA135000 AA148200 AA157581 AA205999 AA281103
Unigene Cluster for ILK: Integrin-linked kinase Hs.706355 [show with all ESTs ] Unigene Representative Sequence: CR749220 GeneLoc Exon Structure 5/16 Alternative Splicing Database (ASD) splice patterns (SP) for ILK (see all 16
) ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b · 7c · 7d ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11a · 11b · 11c ^ 12a · 12b · 12c ^ 13 ^ SP1 :           -   -     -           -       -                     SP2 :   -   -       -   -     -           -       -                     SP3 :   -           -     -           -       -                     SP4 :   -   -       -   -     -                 -                     SP5 :   -         -   -     -           -       -                    
ExUns: 14a · 14b ^ 15 SP1 :       SP2 :       SP3 :       SP4 :       SP5 :      
About this scheme ECgene alternative splicing isoforms for ILK 2 Ensembl transcripts including schematic representations : ENST00000396751
ENST00000299421
Expression for ILK
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ILK expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ILK 1 / 2 / 3
3 probe-sets matching ILK gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GGAGGGATCASOURCE GeneReport for Unigene cluster: Hs.706355 Expression variation in blood from EXPOLDB for ILK
UniProtKB/Swiss-Prot: ILK_HUMAN, Q13418 Tissue specificity : Highly expressed in heart followed by skeletal muscle, pancreas and kidney.Weakly expressed in placenta, lung and liver
Orthologs for ILK
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ILK gene from 5/14 species (see all 14
)
About this table Species with no ortholog for ILK ENSEMBL Gene Tree for ILK Paralogs for ILK (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ILK gene TNNI3K 2 MOS 2
SNPs/Variants for ILK (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ILK (up to first 250kb)
Disorders & Mutations for ILK
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 602366 10/40 Novoseek disease relationships for ILK gene (see all 40
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
renal fibrosis
47.25
4
12925691 (2), 17498677 (2)
carcinoma non-small cell lung
37.25
1
19176380 (1)
thyroid carcinoma anaplastic
31.58
6
16093430 (5)
familial adenomatous polyposis
31.56
2
16799642 (1), 12771992 (1)
tumors
28.38
73
17224516 (5), 12596061 (4), 15631637 (3), 15467740 (3) (see all 31 )
ovarian cancer
27.08
18
14517840 (4), 17187779 (3), 12642872 (2), 12956424 (1) (see all 7 )
metastasis
26.65
17
12596061 (3), 16836071 (3), 15300800 (2), 15631637 (1) (see all 8 )
colon carcinoma
26.52
8
11244511 (4), 14555513 (1), 12191615 (1), 16278819 (1)
cancer
26.51
39
17143519 (3), 18505933 (3), 16314921 (2), 12884912 (2) (see all 19 )
glioblastoma
24.41
14
15105053 (4), 15782140 (4), 16546979 (3), 18464290 (2)
About this table Human Gene Mutation Database : ILK Human Genome Epidemiology Navigator: ILK (1 document)
Medical News for ILK (Possibly Related Articles in
Doctor's Guide )
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Publications for ILK (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/254 PubMed articles for ILK gene (see all 254
): Regulation of cell adhesion and anchorage-dependent growth by a new beta 1-integrin-linked protein kinase. (PubMed id 8538749) 2, 3, 4 Hannigan G.E.... Dedhar S. (1996) Cloning of an isoform of integrin-linked kinase (ILK) that is upregulated in HT-144 melanoma cells following TGF-beta1 stimulation. (PubMed id 10871859) 1, 3, 4 Janji B.... Kieffer N. (2000) Phosphoinositide-3-OH kinase-dependent regulation of glycogen synthase kinase 3 and protein kinase B/AKT by the integrin-linked kinase. (PubMed id 9736715) 1, 3, 4 Delcommenne M.... Dedhar S. (1998) The structural basis of integrin-linked kinase-PINCH interactions. (PubMed id 19074270) 1, 3, 4 Chiswell B.P.... Calderwood D.A. (2008) Characterization of PINCH-2, a new focal adhesion protein that regulates the PINCH-1-ILK interaction, cell spreading, and migration. (PubMed id 12167643) 1, 3, 4 Zhang Y.... Wu C. (2002) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Cell-substrate interactions and signaling through ILK. (PubMed id 10712922) 3, 4 Dedhar S. (2000) Integrin-linked kinase (ILK) binding to paxillin LD1 motif regulates ILK localization to focal adhesions. (PubMed id 11304546) 1, 3 Nikolopoulos S.N. and Turner C.E. (2001) Expression of integrin-linked kinase in the murine lens is consistent with its role in epithelial-mesenchymal transition of lens epithelial cells in vitro. (PubMed id 17563721) 1, 3 Weaver M.S....Sage E.H. (2007) Increased expression of integrin-linked kinase is correlated with melanoma progression and poor patient survival. (PubMed id 14555513) 1, 3 Dai D.L....Li G. (2003)
Search for ILK
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Genome Databases showing ILK
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ILK
(According to HUGE )
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--
Specialized Databases showing ILK (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ILK (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ILK:
Antibodies & Assays for ILK   (ILK1)
Search Tocris compounds for ILK
Antibodies for ILK
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009