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Aliases for ILF3-AS1 Gene

Subcategory (RNA class) for ILF3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ILF3-AS1 Gene

  • ILF3 Antisense RNA 1 (Head To Head) 2 3 5
  • ILF3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ILF3 Antisense RNA 1 2
  • CTC-539A10.4 3

External Ids for ILF3-AS1 Gene

Previous GeneCards Identifiers for ILF3-AS1 Gene

  • GC19M010768
  • GC19M010771
  • GC19M010774
  • GC19M010778

Summaries for ILF3-AS1 Gene

GeneCards Summary for ILF3-AS1 Gene

ILF3-AS1 (ILF3 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ILF3-AS1 Gene

Genomics for ILF3-AS1 Gene

Regulatory Elements for ILF3-AS1 Gene

Enhancers for ILF3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G010651 1.5 ENCODE dbSUPER 26.1 -0.3 -343 5.1 CREB3L1 MLX AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 ILF3-AS1 SLC44A2 UBE2L4 ZNF627 LOC100996288 LOC100419831 RPL10P15 ENSG00000200237 GC19M010652 ILF3
GH19G010726 1.2 ENCODE dbSUPER 27.6 -72.9 -72908 1.1 CREB3L1 ZNF121 ELK1 ZNF592 SMARCA4 KDM1A LEF1 ZNF777 ZNF175 BACH1 ILF3-AS1 QTRT1 ZNF627 LOC100419831 SMARCA4 SLC44A2 PIR47140 MIR4748
GH19G010725 1.2 dbSUPER 27.4 -71.8 -71833 0.7 CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ZNF627 LOC100419831 ILF3-AS1 RAVER1 QTRT1 SLC44A2 TIMM29 FBXL12 CDC37 YIPF2
GH19G010834 1.2 ENCODE 27.3 -182.2 -182154 2.4 CREB3L1 AGO1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 MEF2D ZNF441 ZNF491 ILF3-AS1 ZNF627 QTRT1 EIF3G RAVER1 TIMM29 ICAM1 SMARCA4
GH19G010717 1.7 FANTOM5 ENCODE dbSUPER 19 -65.3 -65284 3.7 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 WRNIP1 ARID4B SIN3A FEZF1 EIF3G FBXL12 RAVER1 QTRT1 ZNF627 ILF3-AS1 LOC100419831 SLC44A2 PRKCSH SWSAP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ILF3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ILF3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000107059 -428 3001 CREB3L1 MLX AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263

Genomic Location for ILF3-AS1 Gene

Chromosome:
19
Start:
10,651,862 bp from pter
End:
10,653,872 bp from pter
Size:
2,011 bases
Orientation:
Minus strand

Genomic View for ILF3-AS1 Gene

Genes around ILF3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ILF3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ILF3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ILF3-AS1 Gene

Proteins for ILF3-AS1 Gene

Post-translational modifications for ILF3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ILF3-AS1 Gene

Domains & Families for ILF3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ILF3-AS1 Gene

Function for ILF3-AS1 Gene

Phenotypes for ILF3-AS1 Gene

GenomeRNAi human phenotypes for ILF3-AS1:
genes like me logo Genes that share phenotypes with ILF3-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ILF3-AS1 Gene

Localization for ILF3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ILF3-AS1 Gene

Pathways & Interactions for ILF3-AS1 Gene

SuperPathways for ILF3-AS1 Gene

No Data Available

Interacting Proteins for ILF3-AS1 Gene

Gene Ontology (GO) - Biological Process for ILF3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ILF3-AS1 Gene

Drugs & Compounds for ILF3-AS1 Gene

No Compound Related Data Available

Transcripts for ILF3-AS1 Gene

mRNA/cDNA for ILF3-AS1 Gene

Unigene Clusters for ILF3-AS1 Gene

ILF3 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ILF3-AS1 Gene

No ASD Table

Relevant External Links for ILF3-AS1 Gene

GeneLoc Exon Structure for
ILF3-AS1
ECgene alternative splicing isoforms for
ILF3-AS1

Expression for ILF3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ILF3-AS1 Gene

SOURCE GeneReport for Unigene cluster for ILF3-AS1 Gene:

Hs.631616
genes like me logo Genes that share expression patterns with ILF3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ILF3-AS1 Gene

Orthologs for ILF3-AS1 Gene

Evolution for ILF3-AS1 Gene

ENSEMBL:
Gene Tree for ILF3-AS1 (if available)
TreeFam:
Gene Tree for ILF3-AS1 (if available)

No data available for Orthologs for ILF3-AS1 Gene

Paralogs for ILF3-AS1 Gene

No data available for Paralogs for ILF3-AS1 Gene

Variants for ILF3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ILF3-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000108372 -- 10,652,476(+) AAGCC(A/G)TTCTT nc-transcript-variant, upstream-variant-2KB
rs1000159157 -- 10,652,268(+) AAGTA(A/G)GCTGG nc-transcript-variant, upstream-variant-2KB
rs1000608634 -- 10,655,535(+) GTGAC(A/G/T)TGGAT intron-variant, upstream-variant-2KB
rs1000958155 -- 10,655,653(+) GCATA(A/T)TTGTG intron-variant, upstream-variant-2KB
rs1002494163 -- 10,653,474(+) CTAGT(A/G)AGATA nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ILF3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1160584 CNV deletion 26073780
nsv833745 CNV loss 17160897

Relevant External Links for ILF3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ILF3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ILF3-AS1 Gene

Disorders for ILF3-AS1 Gene

Relevant External Links for ILF3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ILF3-AS1

No disorders were found for ILF3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ILF3-AS1 Gene

Publications for ILF3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci. (PMID: 25429064) He M. … Qi L. (Hum. Mol. Genet. 2015) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for ILF3-AS1 Gene

Sources for ILF3-AS1 Gene

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