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Aliases & Descriptions for IL7
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| | | Descriptions |
|---|
| IL7 nirs variant 6 2 | | interleukin 7 2 |
|
| | Search outside databases for aliases for IL7 genePrevious GC identifers: GC08M078689 GC08M079682 GC08M079311 GC08M079694 |
Summaries for IL7(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for IL7: The protein encoded by this gene is a cytokine important for B and T cell development. This cytokine and the hepatocyte growth factor (HGF) form a heterodimer that functions as a pre-pro-B cell growth-stimulating factor. This cytokine is found to be a cofactor for V(D)J rearrangement of the T cell receptor beta (TCRB) during early T cell development. This cytokine can be produced locally by intestinal epithelial and epithelial goblet cells, and may serve as a regulatory factor for intestinal mucosal lymphocytes. Knockout studies in mice suggested that this cytokine plays an essential role in lymphoid cell survival. [provided by RefSeq] UniProtKB/Swiss-Prot: IL7_HUMAN, P13232Function: Hematopoietic growth factor capable of stimulating the proliferation of lymphoid progenitors. It is important for proliferation during certain stages of B-cell maturationGene Wiki entry for IL7 (Interleukin_7) |
Genomic Location for IL7
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the IL7 gene 
Entrez Gene cytogenetic band: 8q12-q13 Ensembl cytogenetic band: 8q21.12 HGNC cytogenetic band: 8q12-q13IL7 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 8 GeneLoc Exon Structure GeneLoc location for GC08M079807:
(about GC identifiers)
Start:
|
79,807,560 bp from pter |
End:
|
79,880,313 bp from pter |
Size:
|
72,754 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000008.9 NT_008183.18
| Proteins for IL7
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: IL7_HUMAN, P13232 (See
protein sequence)Recommended Name: Interleukin-7 precursor Size: 177 amino acids; 20187 Da
Subcellular location: Secreted
PDB structures from and Proteopedia :1IL7 (3D)
 3DI2 (3D)
 3DI3 (3D)
 REFSEQ proteins: NP_000871.1
ENSEMBL proteins: ENSP00000368408 ENSP00000263851 ENSP00000368409
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for IL7: Assays for IL7: | Protein
Domains/ Families for IL7(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P13232
ProtoNet protein and cluster: P13232 2 Blocks protein families: IPB000226 Interleukin-7/interleukin-9 IPB001181 Interleukin-7
UniProtKB/Swiss-Prot: IL7_HUMAN, P13232Similarity: Belongs to the IL-7/IL-9 family | Gene Function for IL7
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000880
Applied Biosystems Silencer® siRNAs for IL7
Sigma-Aldrich siRNA and siRNA Panels for IL7  Sigma-Aldrich shRNA Panels and shRNA for IL7  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000880                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000880                                  untagged cDNA clone in CMV expression vector: NM_000880 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000880
UniProtKB/Swiss-Prot: IL7_HUMAN, P13232Function: Hematopoietic growth factor capable of stimulating the proliferation of lymphoid progenitors. It is important for proliferation during certain stages of B-cell maturationGenatlas biochemistry entry for IL7:interleukin 7,20.2kDa,stimulating the proliferation of lymphoid progenitor cells2 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Il7):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for IL7
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for IL7 
5/106 Interacting proteins for IL7 (ENSP000002638513 P132321) via UniProtKB, MINT, and/or STRING (see all 106
)About this table
5/8 Gene Ontology (GO) biological process terms (links to tree view) (see all 8
): About this table
|
Drugs & Compounds for IL7(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for IL7 10/35 Novoseek chemical compound relationships for IL7 gene (see all 35
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| rantes |
58.98 |
48 |
16011532 (11), 12634395 (6), 14516451 (3), 16044003 (2) (see all 22) |
| alpha-galactosylceramide |
45.54 |
14 |
11150537 (3), 10715513 (3), 10594688 (3), 15368282 (1) |
| tyrosine |
44.40 |
43 |
7694866 (3), 1708885 (2), 12750561 (2), 7957877 (2) (see all 30) |
| hemocyanin |
37.35 |
7 |
9815643 (1), 9111580 (1), 7615008 (1), 9935194 (1) (see all 7) |
| ionomycin |
36.25 |
3 |
16045733 (1), 1292630 (1) |
| thymidine |
31.40 |
10 |
8397935 (2), 8152260 (1), 15921626 (1), 9024505 (1) (see all 8) |
| phosphatidylinositol |
26.46 |
13 |
7522165 (2), 9614102 (1), 11739504 (1), 12354940 (1) (see all 7) |
| c-d4t |
21.49 |
1 |
12470268 (1) |
| il-12 |
19.38 |
4 |
12525379 (2), 16943231 (1) |
| il 10 |
17.22 |
3 |
19064561 (1), 10995008 (1), 16943231 (1) |
About this table
|
Transcripts for IL7(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000880
Sigma-Aldrich siRNA and siRNA Panels for IL7  Sigma-Aldrich shRNA Panels and shRNA for IL7  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000880 REFSEQ mRNAs for IL7 gene: NM_000880.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000880               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000880                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000880                                  untagged cDNA clone in CMV expression vector: NM_000880  Additional cDNA sequence: AB102879.1 AB102882.1 AB102883.1 AB102885.1 AB102893.1 AK226000.1 AK291538.1 BC032487.1 BC047698.1 J04156.1 7 DOTS entries: DT.453043 DT.101982641 DT.120632347 DT.120632372 DT.120632362 DT.100745646 DT.305914 24/33 AceView cDNA sequences (see all 33
):CD013921 BM978895 BX107087 AI797222 J04156 CD013919 BC047698 CD013923 CD013922 BX105178 NM_000880 AA683422 CD013920 CB961906 BI869380 BM919542 BC032487 AI688740 BX508877 AA626244 BU632596 AI539460 BP367761 BI520517
highest scoring ESTs for IL7:J04156 AU136355 AW383303 AW383313 BX508877 BC032487 BC047698 CB961906 AA287945 AA288010 Unigene Cluster for IL7: Interleukin 7 Hs.591873 [show with all ESTs]Unigene Representative Sequence: BC047698
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for IL7
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2a | · | 2b | · | 2c | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 | |
| SP1: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for IL7
3 Ensembl transcripts including schematic representations: ENST00000379113
ENST00000263851
ENST00000379114
|
Expression for IL7
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| IL7 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for IL7
1 / 2 / 3 4 probe-sets matching IL7 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AAAGAAATTG
SOURCE GeneReport for Unigene cluster: Hs.591873
Expression variation in blood from EXPOLDB for IL7 |
Orthologs for IL7
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for IL7 gene from 4 species
About this table Species with no ortholog for IL7
ENSEMBL Gene Tree for IL7 | Paralogs for IL7(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for IL7(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for IL7 (up to first 250kb)
|
Disorders & Mutations for IL7
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 146660
10/96 Novoseek disease relationships for IL7 gene (see all 96
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| severe combined immunodeficiency, x-linked |
87.49 |
36 |
8026467 (1), 8605322 (1), 14966353 (1), 7481768 (1) (see all 24) |
| lymphoblastic leukemia acute |
62.50 |
34 |
7535143 (2), 2189505 (2), 7596167 (2), 2388482 (2) (see all 20) |
| lymphopenia |
61.55 |
37 |
15642146 (3), 10837414 (1), 16313348 (1), 16461915 (1) (see all 23) |
| necrosis |
58.19 |
133 |
8943702 (4), 10438843 (2), 17448250 (2), 17185327 (2) (see all 99) |
| severe combined immunodeficiency |
58.17 |
6 |
15661025 (1), 7777571 (1), 12411295 (1), 8916956 (1) (see all 5) |
| t-all |
55.81 |
41 |
14607751 (5), 16019476 (4), 10891465 (4), 17296584 (3) (see all 13) |
| leukemia |
53.39 |
46 |
15949292 (3), 1996110 (2), 10210778 (2), 1921447 (2) (see all 31) |
| hiv infections |
47.27 |
44 |
19372891 (3), 12847229 (3), 11590518 (3), 9562375 (2) (see all 24) |
| sezary syndrome |
45.91 |
7 |
8113839 (2), 9548535 (1), 9639524 (1), 9129044 (1) |
| lymphoma t-cell cutaneous |
45.64 |
11 |
11675351 (2), 9017129 (1), 16322477 (1), 8915148 (1) (see all 6) |
About this table
Human Gene Mutation Database: IL7 Human Genome Epidemiology Navigator: IL7 (5 documents)
|
Medical News for IL7(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for IL7 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/1146 PubMed articles for IL7 gene (see all 1146
):- Comparative model building of interleukin-7 using interleukin-4 as a template: a structural hypothesis that displays atypical surface chemistry in helix D important for receptor activation. (PubMed id 10850801)1, 3, 4 Cosenza L.... Smith T.F. (2000)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Disulfide bond assignment in human interleukin-7 by matrix-assisted laser desorption/ionization mass spectroscopy and site-directed cysteine to serine mutational analysis. (PubMed id 9407080)3, 4 Cosenza L.... Murphy J.R. (1997)
- Prediction of the three-dimensional structure of human interleukin-7 by homology modeling. (PubMed id 8862549)3, 4 Kroemer R.T.... Richards W.G. (1996)
- Characterization of the human and murine IL-7 genes. (PubMed id 2329282)3, 4 Lupton S.D.... Goodwin R.G. (1990)
- Human interleukin 7: molecular cloning and growth factor activity on human and murine B-lineage cells. (PubMed id 2643102)3, 4 Goodwin R.G.... Namen A.E. (1989)
- A three-base-deletion polymorphism in the upstream non-coding region of human interleukin 7 (IL-7) gene could enhance levels of IL-7 expression. (PubMed id 17373935)1, 3 Song H....Shioda T. (2007)
- Biological and clinical implications of interleukin-7 and lymphopoiesis. (PubMed id 10390077)1, 3 Appasamy P.M. (1999)
- Interleukin-7 (IL-7) in patients receiving intensive chemotherapy for acute myelogenous leukemia: studies of systemic IL-7 Levels and IL-7 responsiveness of circulating T lymphocytes. (PubMed id 12433286)1, 3 Wendelbo O....Bruserud O. (2002)
- Effects of IL-7 on early human thymocyte progenitor cells in vitro and in SCID-hu Thy/Liv mice. (PubMed id 12847229)1, 3 Napolitano L.A....McCune J.M. (2003)
|
Search for IL7
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing IL7
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing IL7
(According to HUGE)
About This Section
| -- |
Specialized Databases showing IL7(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| Wikipedia | http://en.wikipedia.org/wiki/Interleukin_7 |
|
| | | About This Section
| --
| Services for IL7(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for IL7:

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Incremental update: 13 Oct 2009
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