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IL7 Gene

protein-coding   GIFtS: 65

GC08M079807
interleukin 7
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
IL-7 1, 2, 3
Descriptions
IL7 nirs variant 6 2
interleukin 7 2
External Ids
HGNC: 60231
Entrez Gene: 35742
UniProtKB: P132323
Ensembl: ENSG000001044327
Search outside databases for aliases for IL7 gene

Previous GC identifers: GC08M078689 GC08M079682 GC08M079311 GC08M079694

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for IL7:
The protein encoded by this gene is a cytokine important for B and T cell development. This
cytokine and the hepatocyte growth factor (HGF) form a heterodimer that functions as a pre-pro-B
cell growth-stimulating factor. This cytokine is found to be a cofactor for V(D)J rearrangement of
the T cell receptor beta (TCRB) during early T cell development. This cytokine can be produced
locally by intestinal epithelial and epithelial goblet cells, and may serve as a regulatory factor
for intestinal mucosal lymphocytes. Knockout studies in mice suggested that this cytokine plays an
essential role in lymphoid cell survival. [provided by RefSeq]

UniProtKB/Swiss-Prot: IL7_HUMAN, P13232
Function: Hematopoietic growth factor capable of stimulating the proliferation of lymphoid
progenitors. It is important for proliferation during certain stages of B-cell maturation

Gene Wiki entry for IL7 (Interleukin_7)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the IL7 gene  

Entrez Gene cytogenetic band: 8q12-q13   Ensembl cytogenetic band:  8q21.12   HGNC cytogenetic band: 8q12-q13

IL7 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08M079807:     (about GC identifiers)

Start:
79,807,560 bp from pter
End:
79,880,313 bp from pter
Size:
72,754 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000008.9  NT_008183.18  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: IL7_HUMAN, P13232 (See protein sequence)
Recommended Name: Interleukin-7 precursor  
Size: 177 amino acids; 20187 Da
Subcellular location: Secreted
PDB structures from and Proteopedia :
1IL7 (3D)    3DI2 (3D)    3DI3 (3D)    

REFSEQ proteins: NP_000871.1  

ENSEMBL proteins: 
ENSP00000368408 ENSP00000263851 ENSP00000368409 


Human Recombinant Proteins 
Invitrogen human recombinant proteins for IL7
Millipore Purified and/or Recombinant IL7 Protein
Sigma-Aldrich Proteins for IL7  
R&D Systems Recombinant & Natural Proteins for IL7 (IL-7)
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (IL7)
Human Recombinant Proteins from Abnova (IL7)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005576 extracellular region TAS2643102
GO:0005615 extracellular space IEA--
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Antibodies for IL7: 
Invitrogen Antibodies for IL7
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for IL7
R&D Systems Antibodies for IL7 (IL-7)
Antibodies from Abcam (IL7), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (IL7)
Novus Biologicals Antibodies for IL7

Assays for IL7: 
Invitrogen Assays for IL7
Millipore Kits and Assays for the Analysis of IL7
R&D Systems Flow Cytometry Kits for IL7 (IL-7)         (see all)
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

3 InterPro domains/families:
 IPR000226 Interleukin_7_9
 IPR018049 Interleukin-7/-9_CS
 IPR001181 Interleukin-7


   GeneDecks  IL7 for the domains selected above  
About GeneDecksing

Graphical View of Domain Structure for InterPro Entry P13232

ProtoNet protein and cluster: P13232

2 Blocks protein families:
IPB000226 Interleukin-7/interleukin-9
IPB001181 Interleukin-7


UniProtKB/Swiss-Prot: IL7_HUMAN, P13232
Similarity: Belongs to the IL-7/IL-9 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (IL7)
Millipore RNAi Products for the Analysis of IL7 Gene knock-down
Browse Abnova for Chimera RNAi Products
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000880

              Applied Biosystems Silencer® siRNAs for IL7

              Sigma-Aldrich siRNA and siRNA Panels for IL7  
                     Sigma-Aldrich shRNA Panels and shRNA for IL7  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for IL7
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000880
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_000880
                                 untagged cDNA clone in CMV expression vector: NM_000880 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_000880

UniProtKB/Swiss-Prot: IL7_HUMAN, P13232
Function: Hematopoietic growth factor capable of stimulating the proliferation of lymphoid
progenitors. It is important for proliferation during certain stages of B-cell maturation

Genatlas biochemistry entry for IL7:
interleukin 7,20.2kDa,stimulating the proliferation of lymphoid progenitor cells

2 MGI mutant phenotypes (inferred from 4 alleles(MGI details for Il7):

hematopoietic systemimmune system

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005125 cytokine activity IEA--
GO:0005139 interleukin-7 receptor binding TAS2643102
GO:0005515 protein binding IPI8266077
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section


3 Kegg Pathways  (Kegg details for IL7):
 hsa04060 Cytokine-cytokine receptor interaction
 hsa04630 Jak-STAT signaling pathway
 hsa04640 Hematopoietic cell lineage

   GeneDecks  IL7 for the pathways selected above  
About GeneDecksing
 Gene Network CentralTM Interacting Genes and Proteins Network for  IL7 


5/106 Interacting proteins for IL7 (ENSP000002638513 P132321) via UniProtKB, MINT, and/or STRING (see all 106 )
InteractantInteraction Details
GeneCardExternal ID(s)
IL2RGP317851STRING (score=.999) EBI-80516, EBI-80475
IL7RP168711STRING (score=.999) EBI-80516, EBI-80490
IL4ENSP000002314493STRING (score=.998)
IL2ENSP000002267303STRING (score=.996)
IL15ENSP000002965453STRING (score=.992)
About this table

5/8 Gene Ontology (GO) biological process terms (links to tree view) (see all 8 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0006959 humoral immune response TAS2643102
GO:0007267 cell-cell signaling TAS2643102
GO:0008284 positive regulation of cell proliferation TAS2643102
GO:0009887 organ morphogenesis TAS2643102
GO:0030890 positive regulation of B cell proliferation ISS--
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for IL7
10/35 Novoseek chemical compound relationships for IL7 gene (see all 35 )
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
rantes 58.98 48 16011532 (11), 12634395 (6), 14516451 (3), 16044003 (2) (see all 22)
alpha-galactosylceramide 45.54 14 11150537 (3), 10715513 (3), 10594688 (3), 15368282 (1)
tyrosine 44.40 43 7694866 (3), 1708885 (2), 12750561 (2), 7957877 (2) (see all 30)
hemocyanin 37.35 7 9815643 (1), 9111580 (1), 7615008 (1), 9935194 (1) (see all 7)
ionomycin 36.25 3 16045733 (1), 1292630 (1)
thymidine 31.40 10 8397935 (2), 8152260 (1), 15921626 (1), 9024505 (1) (see all 8)
phosphatidylinositol 26.46 13 7522165 (2), 9614102 (1), 11739504 (1), 12354940 (1) (see all 7)
c-d4t 21.49 1 12470268 (1)
il-12 19.38 4 12525379 (2), 16943231 (1)
il 10 17.22 3 19064561 (1), 10995008 (1), 16943231 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (IL7)
Millipore RNAi Products for the Analysis of IL7 Gene knock-down
Browse Abnova for Chimera RNAi Products
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000880

              Sigma-Aldrich siRNA and siRNA Panels for IL7  
                     Sigma-Aldrich shRNA Panels and shRNA for IL7  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_000880  

REFSEQ mRNAs for IL7 gene: 

NM_000880.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_000880  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000880
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_000880
                                 untagged cDNA clone in CMV expression vector: NM_000880 

Additional cDNA sequence: 

AB102879.1 AB102882.1 AB102883.1 AB102885.1 AB102893.1 AK226000.1 AK291538.1 BC032487.1 
BC047698.1 J04156.1 

7 DOTS entries:

DT.453043  DT.101982641  DT.120632347  DT.120632372  DT.120632362  DT.100745646  DT.305914 

24/33 AceView cDNA sequences (see all 33 ):

CD013921 BM978895 BX107087 AI797222 J04156 CD013919 BC047698 CD013923 
CD013922 BX105178 NM_000880 AA683422 CD013920 CB961906 BI869380 BM919542 
BC032487 AI688740 BX508877 AA626244 BU632596 AI539460 BP367761 BI520517 

highest scoring ESTs for IL7:

J04156 AU136355 AW383303 AW383313 BX508877 BC032487 BC047698 CB961906 AA287945 AA288010 

Unigene Cluster for IL7:

Interleukin 7
Hs.591873  [show with all ESTs]
Unigene Representative Sequence: BC047698


GeneLoc Exon Structure

4 Alternative Splicing Database (ASD) splice patterns (SP) for IL7

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b ^ 5 ^ 6
SP1:                                      -                                 
SP2:                                -     -                                 
SP3:                                      -           -     -               
SP4:                                                                        

About this scheme

ECgene alternative splicing isoforms for IL7

3 Ensembl transcripts including schematic representations:
ENST00000379113  ENST00000263851  ENST00000379114  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

IL7 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for IL7

1 / 2 / 3

4 probe-sets matching IL7 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

1159_at2, 3 U95-A 1 1.00 1.00 0.92 0.89 J04156 1.00 0.90 0.95 1

33966_at2, 3 U95-A 1 1.00 1.00 0.86 1.50 M29053 0.20 1.00 0.72 1

206693_at2, 3 U133-A 1 1.00 1.00 -- -- NM_000880 0.60 1.00 0.82 1

206693_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
About this table
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: AAAGAAATTG

SOURCE GeneReport for Unigene cluster: Hs.591873

Expression variation in blood from EXPOLDB for IL7

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for IL7 gene from 4 species
Organism Gene Locus Description Human
Similarity
NCBI accessions
chimpanzee
(Pan troglodytes)
IL71   -- interleukin 7 99.81(n)
100(a)
464245  XM_519820.2  XP_519820.2 
cow
(Bos taurus)
IL71   -- interleukin 7 84.85(n)
74.43(a)
280827  NM_173924.2  NP_776349.1 
rat
(Rattus norvegicus)
Il71   -- interleukin 7 79.78(n)
71.33(a)
25647  NM_013110.2  NP_037242.2 
mouse
(Mus musculus)
Il71, 5 3 (6.60 cM)5
interleukin 71, 5 80.61(n)1
69.93(a)1
161961  NM_008371.31  NP_032397.11 
 AK0403995  AK0413075  (see all 18)
About this table        Species with no ortholog for IL7

ENSEMBL Gene Tree for IL7
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

  --
(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/265 NCBI SNPs in IL7 are shown (see all 265 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 93)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 8 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs117775641,2
A,C,F,H79881589(+) GGTCTT/CTAGCC 1 -- ng31 tfbs34Minor allele frequency- C:0.07EU EA WA 420
rs70076341,2
A,C,F,H79882152(+) CAGGAA/GAGGCA 1 -- ng317Minor allele frequency- G:0.07EU EA WA NA 560
rs25837591,2
A,C,F,H79807519(+) TCTCAT/CCTTAA 1 -- ng514Minor allele frequency- C:0.19EU EA WA 408
rs28875011,2
C,F,H,O79881135(+) ctggtA/CaggAG 1 -- ng317Minor allele frequency- C:0.04EU EA WA NA 560
--
rs358525771,2
C,F79807752(+) AGACAA/-GTTAT 1 -- ut311Minor allele frequency- -:0.27EU 270
rs69978911,2
F,H79880560(+) ACTATG/TACTTC 1 -- ng31 tfbs34Minor allele frequency- T:0.07EU EA WA 420
rs119860571,2
H79807235(+) CATCAG/TCACAT 1 -- ng514Minor allele frequency- T:0.00EU EA WA 420
rs175060131,2
F79881947(+) AGCAGC/TATTGA 1 -- ng313Minor allele frequency- T:0.09NA 140
rs27175361,2
A,C,F,H,O79864431(-) CCTGCC/TTCCCC 1 -- int17Minor allele frequency- T:0.22EU EA WA NA 560
rs14418501,2
A,C,F,H,O79820221(+) ATTTCT/CCCAAA 1 -- int112Minor allele frequency- C:0.36NA EA EU WA 842
About this table

HapMap Linkage Disequilibrium images for IL7 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 146660

10/96 Novoseek disease relationships for IL7 gene (see all 96 )

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
severe combined immunodeficiency, x-linked 87.49 36 8026467 (1), 8605322 (1), 14966353 (1), 7481768 (1) (see all 24)
lymphoblastic leukemia acute 62.50 34 7535143 (2), 2189505 (2), 7596167 (2), 2388482 (2) (see all 20)
lymphopenia 61.55 37 15642146 (3), 10837414 (1), 16313348 (1), 16461915 (1) (see all 23)
necrosis 58.19 133 8943702 (4), 10438843 (2), 17448250 (2), 17185327 (2) (see all 99)
severe combined immunodeficiency 58.17 6 15661025 (1), 7777571 (1), 12411295 (1), 8916956 (1) (see all 5)
t-all 55.81 41 14607751 (5), 16019476 (4), 10891465 (4), 17296584 (3) (see all 13)
leukemia 53.39 46 15949292 (3), 1996110 (2), 10210778 (2), 1921447 (2) (see all 31)
hiv infections 47.27 44 19372891 (3), 12847229 (3), 11590518 (3), 9562375 (2) (see all 24)
sezary syndrome 45.91 7 8113839 (2), 9548535 (1), 9639524 (1), 9129044 (1)
lymphoma t-cell cutaneous 45.64 11 11675351 (2), 9017129 (1), 16322477 (1), 8915148 (1) (see all 6)
About this table

Human Gene Mutation Database: IL7
Human Genome Epidemiology Navigator: IL7 (5 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/1146 PubMed articles for IL7 gene (see all 1146 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 3574 HGNC: 6023 AceView: IL7 Ensembl:ENSG00000104432 euGenes: HUgn3574
ECgene: IL7 H-InvDB: IL7
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
Wikipedia http://en.wikipedia.org/wiki/Interleukin_7
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for IL7:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
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 Predesigned and custom siRNAs for IL7 Antibodies for IL7
 Explore super-pooled esiRNAs Proteins for IL7
 Lentivirus-delivered shRNAs for IL7 Browse small molecules at Sigma-Aldrich
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 Antibodies for IL7

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