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Aliases & Descriptions for IL6
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| BSF-2 3 | | BSF2 1, 2, 5 | | CDF 3 | | HGF 1, 2, 5 | | HSF 1, 2, 5 | | IFNB2 2, 3, 5 | | IL-6 1, 2, 3 |
| | | Descriptions |
|---|
| B cell stimulatory factor-2 2 | | B-cell differentiation factor 2 | | B-cell stimulatory factor 2 3 | | CTL differentiation factor 2, 3 | | Hybridoma growth factor 2, 3 | | Interferon beta-2 3 | | interleukin 6 2 | | interleukin 6 (interferon, beta 2) 2 | | interleukin BSF-2 2 |
|
| | Search outside databases for aliases for IL6 genePrevious GC identifers: GC07P022409 GC07P022509 GC07P022540 |
Summaries for IL6(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for IL6: This gene encodes a cytokine that functions in inflammation and the maturation of B cells. The protein is primarily produced at sites of acute and chronic inflammation, where it is secreted into the serum and induces a transcriptional inflammatory response through interleukin 6 receptor, alpha. The functioning of this gene is implicated in a wide variety of inflammation-associated disease states, including suspectibility to diabetes mellitus and systemic juvenile rheumatoid arthritis. [provided by RefSeq] UniProtKB/Swiss-Prot: IL6_HUMAN, P05231Function: IL-6 is a cytokine with a wide variety of biological functions: it plays an essential role in the final differentiation of B-cells into Ig-secreting cells, it induces myeloma and plasmacytoma growth, it induces nerve cells differentiation, in hepatocytes it induces acute phase reactantsGene Wiki entry for IL6 (Interleukin_6) |
Genomic Location for IL6
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the IL6 gene 
Entrez Gene cytogenetic band: 7p21 Ensembl cytogenetic band: 7p15.3 HGNC cytogenetic band: 7p21-p15IL6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07P022732:
(about GC identifiers)
Start:
|
22,732,028 bp from pter |
End:
|
22,738,146 bp from pter |
Size:
|
6,119 bases |
Orientation:
|
plus strand |
1 alternative location:
| Chr7+,CRA_TCAG 22,817,927-22,822,729 |
RefSeq DNA sequence:- NC_000007.12 NT_007819.16 NT_079592.2
| Proteins for IL6
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: IL6_HUMAN, P05231 (See
protein sequence)Recommended Name: Interleukin-6 precursor Size: 212 amino acids; 23718 Da
Subcellular location: Secreted
PDB structures from and Proteopedia :1ALU (3D)
 1IL6 (3D)
 1N2Q (3D)
 1P9M (3D)
 2IL6 (3D)
 
Secondary accessions: Q9UCU2 Q9UCU3 Q9UCU4Post-translational modifications:
N- and O-glycosylated1
REFSEQ proteins: NP_000591.1
ENSEMBL proteins: ENSP00000258743 ENSP00000385675 ENSP00000385718 ENSP00000385043 ENSP00000385227 ENSP00000384928
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for IL6: Assays for IL6: | Protein
Domains/ Families for IL6(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P05231
ProtoNet protein and cluster: P05231 1 Blocks protein family: IPB003574 Interleukin-6 signature
UniProtKB/Swiss-Prot: IL6_HUMAN, P05231Similarity: Belongs to the IL-6 superfamily | Gene Function for IL6
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): BC015511
Applied Biosystems Silencer® siRNAs for IL6
Sigma-Aldrich siRNA and siRNA Panels for IL6  Sigma-Aldrich shRNA Panels and shRNA for IL6  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000600                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000600                                  untagged cDNA clones in CMV expression vector (see all 2): BC015511 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000600
UniProtKB/Swiss-Prot: IL6_HUMAN, P05231Function: IL-6 is a cytokine with a wide variety of biological functions: it plays an essential role in the final differentiation of B-cells into Ig-secreting cells, it induces myeloma and plasmacytoma growth, it induces nerve cells differentiation, in hepatocytes it induces acute phase reactantsGenatlas biochemistry entry for IL6:interleukin 6,23.7kDa,involved in the regulation of immune response,hematopoiesis,platelet production,acute phase reaction and bone resorption (susceptibility factor for osteopenia),playing a role in the aggressiveness of non hodgkin lymphoma by stimulating MMP2 and MMP912 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Il6):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for IL6
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/21 Sigma-Aldrich "Your Favorite Gene" Pathways for IL6 (Your Favorite Gene powered by Ingenuity) (see all 21
) 
Gene Network CentralTM Interacting Genes and Proteins Network for IL6 
5/436 Interacting proteins for IL6 (P052312 ENSP000002587433) via UniProtKB, MINT, and/or STRING (see all 436
)About this table
5/41 Gene Ontology (GO) biological process terms (links to tree view) (see all 41
): About this table
|
Drugs & Compounds for IL6(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for IL6 10/33 Novoseek chemical compound relationships for IL6 gene (see all 33
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| gp 130 |
92.15 |
1216 |
7812050 (6), 9126968 (5), 1602143 (5), 8467812 (5) (see all 99) |
| endotoxin |
81.62 |
813 |
8243265 (7), 11990931 (6), 10499730 (6), 8542650 (4) (see all 99) |
| rantes |
80.50 |
536 |
16413378 (6), 16466762 (6), 12509950 (6), 8831850 (5) (see all 99) |
| il 10 |
77.14 |
219 |
19084425 (6), 12394188 (5), 12719394 (5), 15297015 (4) (see all 99) |
| tocilizumab |
76.31 |
86 |
18784373 (7), 16102523 (4), 17214583 (3), 18664393 (3) (see all 43) |
| neopterin |
74.01 |
304 |
1933885 (6), 9243197 (6), 10211419 (5), 8844226 (4) (see all 99) |
| fibrinogen |
72.23 |
970 |
16703188 (8), 10959691 (6), 16159604 (5), 15155967 (5) (see all 99) |
| lipoteichoic acid |
56.63 |
54 |
10858210 (4), 15379983 (3), 12906718 (2), 14638469 (2) (see all 26) |
| nitric oxide |
55.51 |
981 |
9160463 (8), 14504722 (7), 11069732 (6), 15531955 (6) (see all 99) |
| il-12 |
55.48 |
36 |
11479428 (5), 15140777 (2), 16943231 (2), 17266151 (2) (see all 27) |
About this table
2 PharmGKB drug compound relationships for IL6 geneAbout this table
|
Transcripts for IL6(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): BC015511
Sigma-Aldrich siRNA and siRNA Panels for IL6  Sigma-Aldrich shRNA Panels and shRNA for IL6  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000600 REFSEQ mRNAs for IL6 gene: NM_000600.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000600               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000600                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000600                                  untagged cDNA clones in CMV expression vector (see all 2): BC015511  Additional cDNA sequence: AK298013.1 AK298077.1 AK301141.1 BC015511.1 BT019748.1 BT019749.1 CR450296.1 CR590965.1 CR624632.1 CR626263.1 M14584.1 M18403.1 M29150.1 M54894.1 S56892.1 X04403.1 X04430.1 X04602.1 7 DOTS entries: DT.212868 DT.91771152 DT.85101821 DT.40189406 DT.121119373 DT.40128177 DT.95261924 24/141 AceView cDNA sequences (see all 141
):CD367420 AI472218 CA308665 CD368463 AU102636 CA308172 AI632696 BM675188 BQ001320 CA306654 AA381892 NM_000600 CD743002 BQ008421 BM996808 C21585 CA306986 CD013918 AW966001 BM054692 M18403 BM994425 AI085963 AL544265
highest scoring ESTs for IL6:X04430 AA911581 AA947476 AI074123 AI085963 AI095255 AI343270 AI632696 AI735329 AI751500 Unigene Cluster for IL6: Interleukin 6 (interferon, beta 2) Hs.654458 [show with all ESTs]Unigene Representative Sequence: BM906445
GeneLoc Exon Structure
6 Ensembl transcripts including schematic representations: ENST00000258743
ENST00000404625
ENST00000401651
ENST00000407492
ENST00000406575
ENST00000401630
|
Expression for IL6
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| IL6 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for IL6
1 / 2 / 3 3 probe-sets matching IL6 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GGCACCTCAG
SOURCE GeneReport for Unigene cluster: Hs.654458
Expression variation in blood from EXPOLDB for IL6 |
Orthologs for IL6
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for IL6 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for IL6
ENSEMBL Gene Tree for IL6 | Paralogs for IL6(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for IL6(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| UniProtKB/Swiss-Prot: IL6_HUMAN, P05231Polymorphism: Genetic variations in IL6 may be correlated with bone mineral density (BMD). Low BMD is a risk factor for osteoporotic fracture. Osteoporosis is characterized by reduced bone mineral density, disrutption of bone microarchitecture, and the alteration of the amount and variety of non-collagenous proteins in bone. Osteoporotic bones are more at risk of fracture
HapMap Linkage Disequilibrium images for IL6 (up to first 250kb)
|
Disorders & Mutations for IL6
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 147620 disorders: 604302 148000 125853 108010 266600 UniProtKB/Swiss-Prot: IL6_HUMAN, P05231
Genetic variations in IL6 are associated with susceptibility to systemic juvenile rheumatoid arthritis [MIM:604302]. Systemic juvenile rheumatoid arthritis is juvenile chronic arthritis associated with severe, debilitating, extraarticular features, and occasionally fatal complications. Despite medical treatment, many children still experience early joint destruction, necessitating surgical replacement At least 1 polymorphism in the IL6 gene renders HIV-infected men susceptible to Kaposi sarcoma [MIM:148000]. Kaposi sarcoma is a sarcoma of spindle cells mixed with angiomatous tissue. A relatively rare malignant skin tumor that results in multifocal purplish coloured papules or plaques that eventually form nodules. Most commonly seen in patients who suffer from AIDS10/95 Novoseek disease relationships for IL6 gene (see all 95
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| necrosis |
95.39 |
11879 |
9290459 (7), 15105666 (7), 8855783 (6), 17173645 (6) (see all 99) |
| inflammation |
90.68 |
1983 |
15935563 (5), 17374166 (5), 16518702 (5), 17130257 (4) (see all 99) |
| response acute phase |
88.79 |
575 |
10080883 (5), 7512810 (4), 1883959 (3), 17703320 (3) (see all 99) |
| tumors |
88.42 |
11071 |
15185009 (8), 10375098 (7), 9290459 (7), 15105666 (7) (see all 99) |
| myeloma |
80.42 |
1090 |
10691869 (9), 1954351 (6), 15809207 (6), 15570293 (5) (see all 99) |
| systemic inflammatory response syndrome |
79.15 |
98 |
15641601 (3), 8379598 (3), 10521088 (2), 10966252 (2) (see all 64) |
| rheumatoid arthritis |
78.56 |
535 |
7944637 (6), 16582692 (5), 9410434 (4), 18419107 (3) (see all 99) |
| sepsis |
76.11 |
685 |
16635168 (7), 8797615 (6), 11975924 (6), 11421413 (5) (see all 99) |
| castleman disease |
71.67 |
126 |
18784373 (4), 9462253 (3), 17075601 (2), 19270642 (2) (see all 77) |
| shock septic |
71.12 |
212 |
9366763 (10), 8797615 (6), 12352031 (5), 1292890 (4) (see all 99) |
About this table
6 PharmGKB disease relationships for IL6 geneAbout this table
Human Gene Mutation Database: IL6 Genetic Association Database: IL6 Human Genome Epidemiology Navigator: IL6 (879 documents)
|
Medical News for IL6(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for IL6 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/8983 PubMed articles for IL6 gene (see all 8983
):- The effect of novel polymorphisms in the interleukin-6 (IL-6) gene on IL-6 transcription and plasma IL-6 levels, and an association with systemic-onset juvenile chronic arthritis. (PubMed id 9769329)1, 4, 6, 7 Fishman D.... Woo P. (1998)
- A nucleotide variant in the promoter region of the interleukin-6 gene associated with decreased bone mineral density. (PubMed id 11355017)1, 3, 4, 6 Ota N.... Emi M. (2001)
- The effect of cytokine gene polymorphisms on pediatric heart allograft outcome. (PubMed id 11404167)3, 6, 7 Awad M.R....Zeevi A. (2001)
- The promoter polymorphism of the interleukin-6 gene regulates interleukin-6 production in neonates but not in adults. (PubMed id 11282548)1, 3, 6 Kilpinen S....Hurme M. (2001)
- Interleukin-10, interleukin-6 and interferon-gamma gene polymorphisms in melanoma patients. (PubMed id 12394188)1, 3, 6 Martinez-Escribano J.A....Alvarez-Lopez M.R. (2002)
- Polymorphism of cytokine genes (TGF-beta1, IFN-gamma, IL-6, IL-10, and TNF-alpha) in patients with chronic pancreatitis. (PubMed id 15841043)1, 3, 6 Bendicho M.T....Lemaire D.C. (2005)
- The interleukin-6 G(-174)C polymorphism and the ex vivo interleukin-6 response to endotoxin in severely injured blunt trauma patients. (PubMed id 11956023)1, 3, 6 Heesen M....Majetschak M. (2002)
- Profound bias in interferon-gamma and interleukin-6 allele frequencies in western Kenya, where severe malarial anemia is common in children. (PubMed id 12232842)1, 3, 6 Gourley I.S....Duffy P.E. (2002)
- Interleukin-6 and interferon-gamma gene polymorphisms in the development of bronchiolitis obliterans syndrome after lung transplantation. (PubMed id 12451269)1, 3, 6 Lu K.C....Mohanakumar T. (2002)
- TNF-alpha, IL-6, IFN-gamma, and IL-10 gene expression polymorphisms and the IL-4 receptor alpha-chain variant Q576R: effects on renal allograft outcome. (PubMed id 11544427)1, 3, 6 Hahn A.B....Conti D.J. (2001)
|
Search for IL6
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing IL6
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing IL6
(According to HUGE)
About This Section
| -- |
Specialized Databases showing IL6(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| ATLAS Chromosomes in Cancer entry for IL6 | Genetics and Cytogenetics in Oncology and Haematology | | R&D Systems' cytokine mini-reviews: IL-6 | http://www.rndsystems.com/molecule_detail.aspx?m=1648 | | Wikipedia | http://en.wikipedia.org/wiki/Interleukin_6 | | SeattleSNPs | http://pga.gs.washington.edu/data/il6/ | | SHMPD | http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=IL6 |
|
| | | About This Section
| Licensable Technologies for IL6 gene:
| Services for IL6(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for IL6:

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