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Aliases & Descriptions for IL4
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases BCGF-1 1 , 2 BCGF1 1 , 2 BSF-1 3 BSF1 1 , 2 Binetrakin 3 IL-4 1 , 2 , 3 MGC79402 2 Pitrakinra 3
Descriptions B cell growth factor 1 2 B-cell stimulatory factor 1 3 B_cell stimulatory factor 1 2 Lymphocyte stimulatory factor 1 2 , 3 interleukin 4 2
Search outside databases for aliases for IL4 genePrevious GC identifers: GC05P131531 GC05P132456 GC05P132041 GC05P132085
Summaries for IL4 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for IL4 : The protein encoded by this gene is a pleiotropic cytokine produced by activated T cells. Thiscytokine is a ligand for interleukin 4 receptor. The interleukin 4 receptor also binds to IL13,which may contribute to many overlapping functions of this cytokine and IL13. STAT6, a signaltransducer and activator of transcription, has been shown to play a central role in mediating theimmune regulatory signal of this cytokine. This gene, IL3, IL5, IL13, and CSF2 form a cytokinegene cluster on chromosome 5q, with this gene particularly close to IL13. This gene, IL13 and IL5are found to be regulated coordinately by several long-range regulatory elements in an over 120kilobase range on the chromosome. Two alternatively spliced transcript variants of this geneencoding distinct isoforms have been reported. [provided by RefSeq] UniProtKB/Swiss-Prot: IL4_HUMAN, P05112 Function : Participates in at least several B-cell activation processes as well as of other celltypes. It is a costimulator of DNA-synthesis. It induces the expression of class II MHC moleculeson resting B-cells. It enhances both secretion and cell surface expression of IgE and IgG1. Italso regulates the expression of the low affinity Fc receptor for IgE (CD23) on both lymphocytesand monocytes
Gene Wiki entry for IL4 (Interleukin_4)
Genomic Location for IL4
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the IL4 gene Entrez Gene cytogenetic band: 5q31.1 Ensembl cytogenetic band: 5q31.1 HGNC cytogenetic band: 5q23-q31 IL4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05P132037:
(about GC identifiers )
Start:
132,037,272 bp from pter
End:
132,046,267 bp from pter
Size:
8,996 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000005.8 NT_034772.5 Proteins for IL4
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: IL4_HUMAN, P05112 (See
protein sequence )Recommended Name: Interleukin-4 precursor Size : 153 amino acids; 17492 Da
Subcellular location : Secreted
PDB structures from and Proteopedia : 1BBN (3D)
 1BCN (3D)
 1CYL (3D)
 1HIJ (3D)
 1HIK (3D)
 1HZI (3D)
 1IAR (3D)
 1ILL (3D)
 1ITE (3D)
 1ITI (3D)
 1ITL (3D)
 1ITM (3D)
 1RCB (3D)
 2B8U (3D)
 2B8X (3D)
 2B8Y (3D)
 2B8Z (3D)
 2B90 (3D)
 2B91 (3D)
 2CYK (3D)
 2D48 (3D)
 2INT (3D)
 3BPL (3D)
 3BPN (3D)
 
Secondary accessions : Q14630Alternative splicing : 2 isoforms : P05112-1 P05112-2
REFSEQ proteins (2 alternative transcripts):
NP_000580.1 NP_758858.1 ENSEMBL proteins: ENSP00000231449 ENSP00000325190 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for IL4: Assays for IL4:
Protein
Domains/ Families for IL4(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P05112 ProtoNet protein and cluster: P05112
1 Blocks protein family : IPB001325 Interleukin-4/interleukin-13 UniProtKB/Swiss-Prot: IL4_HUMAN, P05112 Similarity : Belongs to the IL-4/IL-13 family
Gene Function for IL4
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000589 Applied Biosystems Silencer ® siRNAs for IL4 Sigma-Aldrich siRNA and siRNA Panels for IL4 Sigma-Aldrich shRNA Panels and shRNA for IL4 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000589                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000589                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000589  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000589 UniProtKB/Swiss-Prot: IL4_HUMAN, P05112 Function : Participates in at least several B-cell activation processes as well as of other celltypes. It is a costimulator of DNA-synthesis. It induces the expression of class II MHC moleculeson resting B-cells. It enhances both secretion and cell surface expression of IgE and IgG1. Italso regulates the expression of the low affinity Fc receptor for IgE (CD23) on both lymphocytesand monocytes
Genatlas biochemistry entry for IL4 :interleukin 4,15kDa,B-cell stimulating factor 1,important switch factor directing Ig-E synthesis
13 MGI mutant phenotypes (inferred from 14 alleles ) (MGI details for Il4) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for IL4
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/11 Sigma-Aldrich "Your Favorite Gene" Pathways for IL4 (Your Favorite Gene powered by Ingenuity) (see all 11
) Gene Network CentralTM Interacting Genes and Proteins Network for IL4 5/318 Interacting proteins for IL4 (ENSP00000231449 3 P05112 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 318
)About this table 5/17 Gene Ontology (GO) biological process terms (links to tree view) (see all 17
):
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Drugs & Compounds for IL4 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for IL4 10/18 Novoseek chemical compound relationships for IL4 gene (see all 18
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
il 10
79.75
135
11166831 (5), 9800291 (4), 12944981 (3), 9624608 (3) (see all 98 )
ionomycin
79.11
186
7751024 (6), 8599837 (5), 9158101 (3), 9876227 (3) (see all 99 )
rantes
78.66
221
9644628 (5), 11106947 (5), 11385231 (4), 10975998 (4) (see all 99 )
alpha-galactosylceramide
72.35
28
16447760 (2), 16027139 (2), 12902477 (1), 14768039 (1) (see all 24 )
allergens
71.98
71
9252871 (3), 8039807 (2), 8612204 (2), 9863362 (2) (see all 55 )
tarc
71.39
77
12871855 (5), 12441140 (4), 16810739 (4), 16102259 (4) (see all 34 )
il-12
63.42
25
14503949 (2), 18610832 (2), 15688366 (2), 17565376 (1) (see all 19 )
thymidine
54.39
79
2013100 (2), 7949016 (2), 7490461 (2), 8464242 (2) (see all 66 )
con a
48.20
28
15627644 (3), 1309751 (3), 12849703 (2), 7807282 (1) (see all 20 )
tyrosine
46.39
253
7929391 (4), 7518439 (4), 10845915 (4), 8186375 (3) (see all 99 )
About this table 1 PharmGKB drug compound relationship for IL4 gene
Drug compound
PharmGKB Relations
PubMed IDs for articles supporting these relationships
glucocorticoids FA  10623828
About this table
Transcripts for IL4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000589 Sigma-Aldrich siRNA and siRNA Panels for IL4 Sigma-Aldrich shRNA Panels and shRNA for IL4 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000589 NM_172348
REFSEQ mRNAs for IL4 gene (2 alternative transcripts): NM_000589.2 NM_172348.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000589 NM_172348
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000589                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000589                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000589  
Additional cDNA sequence: AB102862.1 AF043336.1 AK310112.1 AM937235.1 BC066277.1 BC066278.1 BC067514.1 BC067515.1 BC070123.1 EF173851.1 M13982.1 X81851.1
2 DOTS entries : DT.101971469 DT.406716
22 AceView cDNA sequences :BC067514 NM_000589 CD559677 NM_172348 X81851 CD559676 CD640452 BC067515 BC066278 AF043336 BC066277 CD559527 BC070123 M13982 CD559523 CD559525 CD559526 CD559524 T29166 AW953230 CD521402 CK130262
highest scoring ESTs for IL4 :M13982 X81851 AF043336 AW953230 BC066277 BC066278 BC067514 BC067515 BC070123 CD521402
Unigene Cluster for IL4: Interleukin 4 Hs.73917 [show with all ESTs ] Unigene Representative Sequence: AK310112 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for IL4 ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 SP1 :           SP2 :     -      
About this scheme ECgene alternative splicing isoforms for IL4 2 Ensembl transcripts including schematic representations : ENST00000231449
ENST00000350025
Expression for IL4
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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IL4 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for IL4 1 / 2 / 3
6 probe-sets matching IL4 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AGAGAGAAATSOURCE GeneReport for Unigene cluster: Hs.73917 Expression variation in blood from EXPOLDB for IL4
Orthologs for IL4
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for IL4 gene from 5 species
About this table Species with no ortholog for IL4 ENSEMBL Gene Tree for IL4 Paralogs for IL4 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for IL4 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for IL4 (up to first 250kb)
Disorders & Mutations for IL4
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 147780 UniProtKB/Swiss-Prot: IL4_HUMAN, P05112
Genetic variations in IL4 may be a cause of susceptibility to ischemic stroke[MIM:601367]; also known as cerebrovascular accident or cerebral infarction. A stroke is an acuteneurologic event leading to death of neural tissue of the brain and resulting in loss of motor,sensory and/or cognitive function. Ischemic strokes, resulting from vascular occlusion, isconsidered to be a highly complex disease consisting of a group of heterogeneous disorders withmultiple genetic and environmental risk factors
10/96 Novoseek disease relationships for IL4 gene (see all 96
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
necrosis
86.32
1948
2032220 (3), 9127126 (3), 10768979 (3), 7622234 (3) (see all 99 )
dermatitis atopic
81.54
223
15014952 (6), 11678851 (5), 1685830 (4), 8082305 (4) (see all 99 )
asthma
78.95
605
10336593 (5), 11991881 (5), 7648458 (5), 16215326 (5) (see all 99 )
asthma allergic
78.82
124
10810222 (4), 8250351 (3), 8534490 (3), 8902881 (3) (see all 74 )
inflammation
78.31
371
8809430 (4), 18576346 (3), 8376806 (2), 7673736 (2) (see all 99 )
atopy
73.55
118
10753021 (3), 15087090 (3), 12911786 (3), 11990231 (2) (see all 82 )
allergy
72.96
129
12363420 (3), 10460779 (2), 18031948 (2), 8908280 (2) (see all 96 )
tumors
72.86
1879
9816099 (7), 8423237 (5), 8280717 (5), 1651157 (5) (see all 99 )
severe combined immunodeficiency, x-linked
72.45
48
8557662 (3), 7937790 (2), 8026467 (1), 7803808 (1) (see all 32 )
eosinophilia
70.44
101
11776778 (2), 12789240 (2), 12007717 (2), 17996260 (2) (see all 70 )
About this table Human Gene Mutation Database : IL4 Genetic Association Database: IL4 Human Genome Epidemiology Navigator: IL4 (352 documents) Tumor Gene Database : IL4
Medical News for IL4 (Possibly Related Articles in
Doctor's Guide )
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Publications for IL4 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/4464 PubMed articles for IL4 gene (see all 4464
): Isolation and characterization of a human interleukin cDNA clone, homologous to mouse B-cell stimulatory factor 1, that expresses B- cell- and T-cell-stimulating activities. (PubMed id 3016727) 2, 3, 4 Yokota T.... Arai K. (1986) [Correlation between polymorphism of IL-4 and IL-10 gene promoter and childhood asthma and their impact upon cytokine expression] (PubMed id 11953141) 1, 3, 6 Zhang J....Chen Y. (2002) Interleukin (IL)-4, IL-10, IL-18 and IFN-gamma cytokines pattern in patients with combined hepatitis C virus and Schistosoma mansoni infections. (PubMed id 15644127) 1, 3, 6 El-Kady I.M....Waked I. (2005) Relationships between specific serum IgE, cytokines and polymorphisms in the IL-4, IL-4Ralpha in patients with penicillins allergy. (PubMed id 15969687) 1, 3, 6 Qiao H.L....Zhang Y.W. (2005) Association and interaction of the IL4R, IL4, and IL13 loci with type 1 diabetes among Filipinos. (PubMed id 12748907) 1, 3, 6 Bugawan T.L....Erlich H.A. (2003) Lack of association between atopic eczema and the genetic variants of interleukin-4 and the interleukin-4 receptor alpha chain gene: heterogeneity of genetic backgrounds on immunoglobulin E production in atopic eczema patients. (PubMed id 11678851) 1, 3, 6 Tanaka K....Montgomery D.S. (2001) Lack of association of genetic polymorphisms in the interleukin-1beta, interleukin-1 receptor antagonist, interleukin-4 and interleukin-10 genes with mitral valve prolapse in Taiwan Chinese. (PubMed id 12578333) 1, 3, 6 Chou H.T....Tsai F.J. (2003) Association of IL-1Ra gene polymorphism, but no association of IL-1beta and IL-4 gene polymorphisms, with Kawasaki disease. (PubMed id 15900570) 1, 3, 6 Wu S.F....Tsai F.J. (2005) Associations between specific serum IgE response and 6 variants within the genes IL4, IL13, and IL4RA in German children: the German Multicenter Atopy Study. (PubMed id 15007352) 1, 3, 6 Liu X....Nickel R. (2004) Genetic variants of FcepsilonRIbeta and Il-4 and atopy in a Polish population. (PubMed id 15087090) 1, 3, 6 Korzycka-Zaborowska B....Gorski P. (2004)
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Genome Databases showing IL4
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing IL4
(According to HUGE )
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Specialized Databases showing IL4 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for IL4 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for IL4:
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009