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Aliases for IL21-AS1 Gene

Subcategory (RNA class) for IL21-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IL21-AS1 Gene

  • IL21 Antisense RNA 1 2 3 5
  • IL21 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for IL21-AS1 Gene

Previous GeneCards Identifiers for IL21-AS1 Gene

  • GC04P123541

Summaries for IL21-AS1 Gene

GeneCards Summary for IL21-AS1 Gene

IL21-AS1 (IL21 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IL21-AS1 Gene

Genomics for IL21-AS1 Gene

Regulatory Elements for IL21-AS1 Gene

Enhancers for IL21-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F122583 1.3 Ensembl ENCODE 11 -34.3 -34283 1.8 ZFP64 ZNF133 SIN3A ARID4B DMAP1 ZNF2 ZNF48 YY1 SP5 NFYC IL21-AS1 KIAA1109 IL2
GH04F122795 1.5 FANTOM5 Ensembl ENCODE 9.3 +179.2 179169 4.5 TBP HDAC1 ZBTB40 RAD21 ZNF366 CEBPB ZEB2 REST ZNF518A POLR2H FGF2 NUDT6 SPATA5 IL21-AS1 CETN4P SPRY1 RPL34P12 LOC727709
GH04F122665 1.2 Ensembl ENCODE 10.6 +48.5 48508 4.4 PKNOX1 FEZF1 ZNF121 KLF7 FOS JUNB TSHZ1 TBX21 MBD2 MEF2D IL21 IL21-AS1 FGF2 BBS12
GH04F122660 1.1 Ensembl ENCODE 11 +42.5 42517 1.3 CBX3 ATF1 CREB3L1 ETV1 ZNF175 ZNF316 ZNF766 FOXK2 GATA2 NFE2 IL21-AS1 BBS12 CETN4P FGF2 IL21
GH04F122699 1.1 Ensembl ENCODE 10.1 +81.3 81315 1.0 HDAC1 ATF1 CBX3 SIN3A ZBTB40 RAD21 CREM EGR2 ZNF263 USF2 FGF2 IL21-AS1 CETN4P BBS12 IL21
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IL21-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for IL21-AS1 Gene

Chromosome:
4
Start:
122,618,983 bp from pter
End:
122,689,156 bp from pter
Size:
70,174 bases
Orientation:
Plus strand

Genomic View for IL21-AS1 Gene

Genes around IL21-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IL21-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IL21-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IL21-AS1 Gene

Proteins for IL21-AS1 Gene

Post-translational modifications for IL21-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IL21-AS1 Gene

Domains & Families for IL21-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IL21-AS1 Gene

Function for IL21-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IL21-AS1 Gene

Localization for IL21-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for IL21-AS1 Gene

Pathways & Interactions for IL21-AS1 Gene

SuperPathways for IL21-AS1 Gene

No Data Available

Interacting Proteins for IL21-AS1 Gene

Gene Ontology (GO) - Biological Process for IL21-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IL21-AS1 Gene

Transcripts for IL21-AS1 Gene

mRNA/cDNA for IL21-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IL21-AS1 Gene

IL21 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IL21-AS1 Gene

No ASD Table

Relevant External Links for IL21-AS1 Gene

GeneLoc Exon Structure for
IL21-AS1
ECgene alternative splicing isoforms for
IL21-AS1

Expression for IL21-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for IL21-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IL21-AS1 Gene

This gene is overexpressed in Testis (x28.5), Vagina (x6.8), and Bladder (x6.0).

SOURCE GeneReport for Unigene cluster for IL21-AS1 Gene:

Hs.439487
genes like me logo Genes that share expression patterns with IL21-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for IL21-AS1 Gene

Orthologs for IL21-AS1 Gene

Evolution for IL21-AS1 Gene

ENSEMBL:
Gene Tree for IL21-AS1 (if available)
TreeFam:
Gene Tree for IL21-AS1 (if available)

No data available for Orthologs for IL21-AS1 Gene

Paralogs for IL21-AS1 Gene

No data available for Paralogs for IL21-AS1 Gene

Variants for IL21-AS1 Gene

Sequence variations from dbSNP and Humsavar for IL21-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs587777338 Pathogenic 122,620,866(+) TTTTC(A/G)GCTGA reference, missense, splice-acceptor-variant
rs10017636 -- 122,672,886(+) tgctt(A/T)aaggc intron-variant
rs10023927 -- 122,646,772(+) TTTAC(A/G)GGATG intron-variant
rs10027071 -- 122,688,574(+) CATAC(A/G)AAGAG nc-transcript-variant
rs10032644 -- 122,622,919(+) AAAAA(A/T)AAAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for IL21-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3602030 CNV loss 21293372

Relevant External Links for IL21-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IL21-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IL21-AS1 Gene

Disorders for IL21-AS1 Gene

Relevant External Links for IL21-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IL21-AS1

No disorders were found for IL21-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IL21-AS1 Gene

Publications for IL21-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for IL21-AS1 Gene

Sources for IL21-AS1 Gene

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