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Aliases for IL17D Gene

Aliases for IL17D Gene

  • Interleukin 17D 2 3 5
  • IL-17D 3 4
  • Interleukin-17D 3
  • Interleukin 27 2
  • Interleukin-27 4
  • IL-27 4

External Ids for IL17D Gene

Previous GeneCards Identifiers for IL17D Gene

  • GC13P019257
  • GC13P015257
  • GC13P020207
  • GC13P019075
  • GC13P020175
  • GC13P021276
  • GC13P002080

Summaries for IL17D Gene

Entrez Gene Summary for IL17D Gene

  • The protein encoded by this gene is a cytokine that shares the sequence similarity with IL17. The treatment of endothelial cells with this cytokine has been shown to stimulate the production of other cytokines including IL6, IL8 and CSF2/ GM-CSF. The increased expression of IL8 induced by this cytokine was found to be NF-kappa B-dependent. [provided by RefSeq, Jul 2008]

GeneCards Summary for IL17D Gene

IL17D (Interleukin 17D) is a Protein Coding gene. Among its related pathways are IL-17 Family Signaling Pathways and Jak-STAT signaling pathway (KEGG). GO annotations related to this gene include cytokine activity. An important paralog of this gene is IL17B.

UniProtKB/Swiss-Prot for IL17D Gene

  • Induces expression of IL6, CXCL8/IL8, and CSF2/GM-CSF from endothelial cells.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IL17D Gene

Genomics for IL17D Gene

Regulatory Elements for IL17D Gene

Enhancers for IL17D Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F020822 1.2 FANTOM5 Ensembl ENCODE 10.2 +122.5 122512 3.4 HLF BHLHE40 FEZF1 JUND POLR2A SMARCA4 ZBTB33 MAFK EEF1AKMT1 CRYL1 SLC35E1P1 IFT88 IL17D GC13P020892
GH13F020720 0.9 Ensembl ENCODE 7.7 +19.6 19613 1.7 SCRT1 CTCF RNF2 BHLHE40 RAD21 OSR2 JUND ATF3 SCRT2 FOS IFT88 EEF1AKMT1 CRYL1 IL17D GC13M020722 ENSG00000279135
GH13F020552 1.1 FANTOM5 ENCODE 6.3 -148.3 -148300 2.2 SOX13 ELF3 SAP130 MLX ARID4B CEBPG ZNF644 RAD21 RARA TEAD3 IFT88 CRYL1 SLC35E1P1 EEF1AKMT1 IL17D
GH13F020565 1.1 ENCODE 4.9 -134.8 -134836 2.9 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 IFT88 SLC35E1P1 CNOT4P1 LINC00367 LINC01072 LATS2-AS1 IPPKP1 LINC01046 LINC00350 MRPS31P2
GH13F020556 0.9 ENCODE 4.9 -143.0 -142964 4.6 ELF3 TBP DMAP1 RAD21 RARA YY1 ZNF335 ZNF121 CREM MIXL1 IFT88 SLC35E1P1 IL17D CRYL1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IL17D on UCSC Golden Path with GeneCards custom track

Promoters for IL17D Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000512618 1573 2601 PKNOX1 ARID4B SIN3A BMI1 ZNF48 RAD21 ZNF121 ELK1 REST SMARCA4

Genomic Location for IL17D Gene

Chromosome:
13
Start:
20,702,127 bp from pter
End:
20,723,100 bp from pter
Size:
20,974 bases
Orientation:
Plus strand

Genomic View for IL17D Gene

Genes around IL17D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IL17D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IL17D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IL17D Gene

Proteins for IL17D Gene

  • Protein details for IL17D Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TAD2-IL17D_HUMAN
    Recommended name:
    Interleukin-17D
    Protein Accession:
    Q8TAD2
    Secondary Accessions:
    • B1AM69

    Protein attributes for IL17D Gene

    Size:
    202 amino acids
    Molecular mass:
    21893 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IL17D Gene

Post-translational modifications for IL17D Gene

  • Glycosylation at Asn 68 and Asn 181
  • Modification sites at PhosphoSitePlus

Other Protein References for IL17D Gene

No data available for DME Specific Peptides for IL17D Gene

Domains & Families for IL17D Gene

Gene Families for IL17D Gene

Protein Domains for IL17D Gene

Suggested Antigen Peptide Sequences for IL17D Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8TAD2

UniProtKB/Swiss-Prot:

IL17D_HUMAN :
  • Belongs to the IL-17 family.
Family:
  • Belongs to the IL-17 family.
genes like me logo Genes that share domains with IL17D: view

Function for IL17D Gene

Molecular function for IL17D Gene

UniProtKB/Swiss-Prot Function:
Induces expression of IL6, CXCL8/IL8, and CSF2/GM-CSF from endothelial cells.

Gene Ontology (GO) - Molecular Function for IL17D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005125 cytokine activity IBA --
GO:0005126 cytokine receptor binding IBA --
genes like me logo Genes that share ontologies with IL17D: view
genes like me logo Genes that share phenotypes with IL17D: view

Animal Model Products

  • Taconic Biosciences Mouse Models for IL17D

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IL17D Gene

Localization for IL17D Gene

Subcellular locations from UniProtKB/Swiss-Prot for IL17D Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for IL17D gene
Compartment Confidence
extracellular 5
nucleus 3

Gene Ontology (GO) - Cellular Components for IL17D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005615 extracellular space IEA,IBA --
genes like me logo Genes that share ontologies with IL17D: view

Pathways & Interactions for IL17D Gene

genes like me logo Genes that share pathways with IL17D: view

Pathways by source for IL17D Gene

1 BioSystems pathway for IL17D Gene
2 KEGG pathways for IL17D Gene
1 R&D Systems pathway for IL17D Gene

Interacting Proteins for IL17D Gene

Gene Ontology (GO) - Biological Process for IL17D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006954 inflammatory response IBA --
GO:0007166 cell surface receptor signaling pathway IBA --
genes like me logo Genes that share ontologies with IL17D: view

No data available for SIGNOR curated interactions for IL17D Gene

Drugs & Compounds for IL17D Gene

(1) Drugs for IL17D Gene - From: ApexBio

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Y-320 Pharma 0

(1) ApexBio Compounds for IL17D Gene

Compound Action Cas Number
Y-320 288250-47-5
genes like me logo Genes that share compounds with IL17D: view

Transcripts for IL17D Gene

Unigene Clusters for IL17D Gene

Interleukin 17D:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for IL17D Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c · 8d
SP1: - -
SP2: - - - - - -
SP3: - - - -
SP4: - -
SP5: - - - - -

Relevant External Links for IL17D Gene

GeneLoc Exon Structure for
IL17D
ECgene alternative splicing isoforms for
IL17D

Expression for IL17D Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for IL17D Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for IL17D Gene

This gene is overexpressed in Brain - Caudate (basal ganglia) (x4.7), Brain - Nucleus accumbens (basal ganglia) (x4.5), Brain - Putamen (basal ganglia) (x4.2), and Brain - Amygdala (x4.1).

Protein differential expression in normal tissues from HIPED for IL17D Gene

This gene is overexpressed in Heart (59.4) and Ovary (6.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for IL17D Gene



Protein tissue co-expression partners for IL17D Gene

NURSA nuclear receptor signaling pathways regulating expression of IL17D Gene:

IL17D

SOURCE GeneReport for Unigene cluster for IL17D Gene:

Hs.655142

mRNA Expression by UniProt/SwissProt for IL17D Gene:

Q8TAD2-IL17D_HUMAN
Tissue specificity: Expressed preferentially in adipose, skeletal muscle and CNS.
genes like me logo Genes that share expression patterns with IL17D: view

Primer Products

Orthologs for IL17D Gene

This gene was present in the common ancestor of chordates.

Orthologs for IL17D Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia IL17D 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia IL17D 34 35
  • 86.2 (n)
mouse
(Mus musculus)
Mammalia Il17d 34 16 35
  • 84.94 (n)
dog
(Canis familiaris)
Mammalia IL17D 35
  • 76 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia IL17D 35
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia IL17D 35
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia IL17D 35
  • 63 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia il17d 34
  • 70.24 (n)
zebrafish
(Danio rerio)
Actinopterygii il17d 34 35
  • 66.44 (n)
Species where no ortholog for IL17D was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for IL17D Gene

ENSEMBL:
Gene Tree for IL17D (if available)
TreeFam:
Gene Tree for IL17D (if available)

Paralogs for IL17D Gene

Paralogs for IL17D Gene

genes like me logo Genes that share paralogs with IL17D: view

Variants for IL17D Gene

Sequence variations from dbSNP and Humsavar for IL17D Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10644027 -- 20,708,843(+) ATACA(-/AAA/AAAA/AAAAAAAA)AAAAA intron-variant
rs10668244 -- 20,711,833(+) GGATA(-/GC)CAGAC intron-variant
rs10668245 -- 20,711,836(+) TACAG(-/GG)ACTGG intron-variant
rs10669254 -- 20,711,835(+) ATACA(-/GG)GACTG intron-variant
rs1075690 -- 20,705,551(+) GATTA(A/G)CGAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IL17D Gene

Variant ID Type Subtype PubMed ID
nsv952524 CNV deletion 24416366
nsv832558 CNV loss 17160897
nsv1151909 OTHER inversion 26484159
nsv1140246 OTHER inversion 24896259
nsv1078303 OTHER inversion 25765185
nsv1069733 CNV deletion 25765185
esv3550134 CNV deletion 23714750
dgv922n106 CNV deletion 24896259

Variation tolerance for IL17D Gene

Residual Variation Intolerance Score: 79.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.65; 31.57% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for IL17D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IL17D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IL17D Gene

Disorders for IL17D Gene

Relevant External Links for IL17D

Human Genome Epidemiology (HuGE) Navigator
IL17D
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IL17D

No disorders were found for IL17D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IL17D Gene

Publications for IL17D Gene

  1. Cutting edge: IL-17D, a novel member of the IL-17 family, stimulates cytokine production and inhibits hemopoiesis. (PMID: 12097364) Starnes T. … Hromas R. (J. Immunol. 2002) 2 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Interleukin-17D mediates tumor rejection through recruitment of natural killer cells. (PMID: 24794441) O'Sullivan T. … Bui J.D. (Cell Rep 2014) 3 64
  4. Genetic determinants of P wave duration and PR segment. (PMID: 24850809) Verweij N. … van der Harst P. (Circ Cardiovasc Genet 2014) 3 64
  5. GWAS of dental caries patterns in the permanent dentition. (PMID: 23064961) Shaffer J.R. … Marazita M.L. (J. Dent. Res. 2013) 3 64

Products for IL17D Gene

Sources for IL17D Gene

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