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Aliases for IL12A-AS1 Gene

Subcategory (RNA class) for IL12A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IL12A-AS1 Gene

  • IL12A Antisense RNA 1 2 3 5
  • CTD-2049J23.2 3

External Ids for IL12A-AS1 Gene

Previous GeneCards Identifiers for IL12A-AS1 Gene

  • GC03M159632

Summaries for IL12A-AS1 Gene

GeneCards Summary for IL12A-AS1 Gene

IL12A-AS1 (IL12A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with IL12A-AS1 include Behcet Syndrome.

Additional gene information for IL12A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IL12A-AS1 Gene

Genomics for IL12A-AS1 Gene

Regulatory Elements for IL12A-AS1 Gene

Enhancers for IL12A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H160168 0.9 Ensembl ENCODE 12.8 +56.0 55973 1.2 MAFG FOSL1 ZNF316 JUND IKZF1 NFE2 FOS MAFK EMSY NFE2L2 C3orf80 IL12A-AS1 BRD7P2
GH03H159897 0.9 ENCODE dbSUPER 10 +327.2 327153 1.7 FEZF1 ZNF518A ATF2 NR2F2 OSR2 ZFHX2 PRDM6 POLR2A SCRT2 ZNF580 IL12A C3orf80 IL12A-AS1 SCHIP1 LOC101928351
GH03H160413 0.7 ENCODE 10.6 -188.5 -188489 0.2 CTCF ZNF654 FOXA2 FOXA3 TRIM22 ZNF384 REST RAD21 RFX5 FOXA1 B3GAT3P1 IL12A-AS1 C3orf80 IL12A GC03P160413 ENSG00000248710
GH03H159900 0.7 dbSUPER 10 +323.0 322982 3.1 PKNOX1 ZSCAN4 BATF HIC1 ZNF366 ATF7 ETV6 IKZF2 CREM NR2F1 IL12A C3orf80 IL12A-AS1 SCHIP1 LOC101928351
GH03H160204 0.5 FANTOM5 12.2 +20.6 20607 0.3 ZFHX2 SPI1 IL12A-AS1 KPNA4 C3orf80 BRD7P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IL12A-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for IL12A-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000161206 -501 801 HDAC1 ATF1 RB1 FUS SIN3A GLIS2 EGR1 ATF7 CREM EGR2

Genomic Locations for IL12A-AS1 Gene

Genomic Locations for IL12A-AS1 Gene
chr3:159,913,400-160,225,299
(GRCh38/hg38)
Size:
311,900 bases
Orientation:
Minus strand
chr3:159,631,189-159,943,086
(GRCh37/hg19)

Genomic View for IL12A-AS1 Gene

Genes around IL12A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IL12A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IL12A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IL12A-AS1 Gene

Proteins for IL12A-AS1 Gene

Post-translational modifications for IL12A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IL12A-AS1 Gene

Domains & Families for IL12A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IL12A-AS1 Gene

Function for IL12A-AS1 Gene

Phenotypes From GWAS Catalog for IL12A-AS1 Gene

Human Phenotype Ontology for IL12A-AS1 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IL12A-AS1 Gene

Localization for IL12A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IL12A-AS1 Gene

Pathways & Interactions for IL12A-AS1 Gene

SuperPathways for IL12A-AS1 Gene

No Data Available

Interacting Proteins for IL12A-AS1 Gene

Gene Ontology (GO) - Biological Process for IL12A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IL12A-AS1 Gene

Drugs & Compounds for IL12A-AS1 Gene

No Compound Related Data Available

Transcripts for IL12A-AS1 Gene

mRNA/cDNA for IL12A-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IL12A-AS1 Gene

No ASD Table

Relevant External Links for IL12A-AS1 Gene

GeneLoc Exon Structure for
IL12A-AS1
ECgene alternative splicing isoforms for
IL12A-AS1

Expression for IL12A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IL12A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IL12A-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x14.9), Testis (x9.9), Brain - Cortex (x5.6), and Brain - Frontal Cortex (BA9) (x5.5).
genes like me logo Genes that share expression patterns with IL12A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IL12A-AS1 Gene

Orthologs for IL12A-AS1 Gene

Evolution for IL12A-AS1 Gene

ENSEMBL:
Gene Tree for IL12A-AS1 (if available)
TreeFam:
Gene Tree for IL12A-AS1 (if available)

No data available for Orthologs for IL12A-AS1 Gene

Paralogs for IL12A-AS1 Gene

No data available for Paralogs for IL12A-AS1 Gene

Variants for IL12A-AS1 Gene

Sequence variations from dbSNP and Humsavar for IL12A-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000021464 -- 160,158,328(+) TTTTT(A/G)AAGAC intron-variant
rs1000030472 -- 159,943,721(+) TATAG(A/G)GGCAG intron-variant
rs1000054013 -- 159,970,406(+) TCCTG(-/C)CCCTT intron-variant
rs1000079065 -- 160,013,871(+) TAGGG(C/T)AATTA intron-variant
rs1000092455 -- 159,986,167(+) TGGAC(A/T)TGATG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IL12A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv997776 CNV gain 25217958
nsv963371 CNV duplication 23825009
nsv963370 CNV duplication 23825009
nsv829769 CNV gain 17160897
nsv819439 CNV loss 19587683
nsv521069 CNV loss 19592680
nsv507132 OTHER sequence alteration 20534489
nsv4087 CNV insertion 18451855
nsv4086 CNV deletion 18451855
nsv1142377 CNV tandem duplication 24896259
nsv1142376 CNV tandem duplication 24896259
nsv1117037 CNV deletion 24896259
nsv1114443 CNV deletion 24896259
esv3598382 CNV loss 21293372
esv3598381 CNV gain 21293372
esv3598378 CNV loss 21293372
esv3598375 CNV loss 21293372
esv3584505 CNV gain 24956385
esv3569078 CNV loss 25503493
esv3385188 CNV duplication 20981092
esv3358384 CNV duplication 20981092
esv3327982 CNV insertion 20981092
esv2676986 CNV deletion 23128226
esv2660532 CNV deletion 23128226
esv24820 CNV gain 19812545
esv24661 CNV loss 19812545
dgv948e214 CNV loss 21293372

Relevant External Links for IL12A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IL12A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IL12A-AS1 Gene

Disorders for IL12A-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for IL12A-AS1 Gene - From: Orphanet and DISEASES

Disorder Aliases PubMed IDs
behcet syndrome
  • behcet's disease
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for IL12A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IL12A-AS1
genes like me logo Genes that share disorders with IL12A-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for IL12A-AS1 Gene

Publications for IL12A-AS1 Gene

  1. Brief report: association of CCR1, KLRC4, IL12A-AS1, STAT4, and ERAP1 With Behçet's disease in Iranians. (PMID: 26097239) Sousa I … Oliveira SA (Arthritis & rheumatology (Hoboken, N.J.) 2015) 3 60
  2. Genome-wide association analysis identifies new susceptibility loci for Behçet's disease and epistasis between HLA-B*51 and ERAP1. (PMID: 23291587) Kirino Y … Kastner DL (Nature genetics 2013) 3 60
  3. Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies. (PMID: 23377640) GENDEP Investigators … STAR*D Investigators (The American journal of psychiatry 2013) 3 60
  4. Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis. (PMID: 21399635) Mells GF … Anderson CA (Nature genetics 2011) 3 60
  5. Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. (PMID: 21833088) International Multiple Sclerosis Genetics Consortium … Compston A (Nature 2011) 3 60

Products for IL12A-AS1 Gene

Sources for IL12A-AS1 Gene

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