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Aliases for IKZF5 Gene

Aliases for IKZF5 Gene

  • IKAROS Family Zinc Finger 5 2 3 5
  • Zinc Finger Protein, Subfamily 1A, 5 (Pegasus) 2 3
  • IKAROS Family Zinc Finger 5 (Pegasus) 2 3
  • ZNFN1A5 3 4
  • Zinc Finger Transcription Factor Pegasus 3
  • Zinc Finger Protein, Subfamily 1A, 5 2
  • Ikaros Family Zinc Finger Protein 5 4
  • PEGASUS 3

External Ids for IKZF5 Gene

Previous HGNC Symbols for IKZF5 Gene

  • ZNFN1A5

Previous GeneCards Identifiers for IKZF5 Gene

  • GC10M124740
  • GC10M118370

Summaries for IKZF5 Gene

Entrez Gene Summary for IKZF5 Gene

  • Members of the Ikaros (ZNFN1A1; MIM 603023) family of transcription factors, which includes Pegasus, are expressed in lymphocytes and are implicated in the control of lymphoid development.[supplied by OMIM, Jul 2002]

GeneCards Summary for IKZF5 Gene

IKZF5 (IKAROS Family Zinc Finger 5) is a Protein Coding gene. An important paralog of this gene is IKZF4.

UniProtKB/Swiss-Prot for IKZF5 Gene

  • DNA-binding protein that binds to the 5GNNTGTNG-3 core sequence. Transcriptional repressor.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IKZF5 Gene

Genomics for IKZF5 Gene

Regulatory Elements for IKZF5 Gene

Promoters for IKZF5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around IKZF5 on UCSC Golden Path with GeneCards custom track

Genomic Location for IKZF5 Gene

Chromosome:
10
Start:
122,990,806 bp from pter
End:
123,008,850 bp from pter
Size:
18,045 bases
Orientation:
Minus strand

Genomic View for IKZF5 Gene

Genes around IKZF5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IKZF5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IKZF5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IKZF5 Gene

Proteins for IKZF5 Gene

  • Protein details for IKZF5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H5V7-IKZF5_HUMAN
    Recommended name:
    Zinc finger protein Pegasus
    Protein Accession:
    Q9H5V7
    Secondary Accessions:
    • B3KVH7
    • D3DRE7
    • Q9H2T0

    Protein attributes for IKZF5 Gene

    Size:
    419 amino acids
    Molecular mass:
    46510 Da
    Quaternary structure:
    • Self-associates. Interacts with other family members; IKZF1, IKZF2, IKZF3 AND IKZF4.
    Miscellaneous:
    • Pegasus was the winged horse in Greek mythology.

neXtProt entry for IKZF5 Gene

Proteomics data for IKZF5 Gene at MOPED

Post-translational modifications for IKZF5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for IKZF5 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for IKZF5 Gene

Domains & Families for IKZF5 Gene

Gene Families for IKZF5 Gene

Protein Domains for IKZF5 Gene

Suggested Antigen Peptide Sequences for IKZF5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H5V7

UniProtKB/Swiss-Prot:

IKZF5_HUMAN :
  • The N-terminal zinc fingers are involved in sequence-specific DNA binding and heterotypic associations with other family members.
  • Belongs to the Ikaros C2H2-type zinc-finger protein family.
  • Contains 5 C2H2-type zinc fingers.
Domain:
  • The N-terminal zinc fingers are involved in sequence-specific DNA binding and heterotypic associations with other family members.
  • C-terminal zinc fingers mediate homodimerization.
Family:
  • Belongs to the Ikaros C2H2-type zinc-finger protein family.
Similarity:
  • Contains 5 C2H2-type zinc fingers.
genes like me logo Genes that share domains with IKZF5: view

Function for IKZF5 Gene

Molecular function for IKZF5 Gene

UniProtKB/Swiss-Prot Function:
DNA-binding protein that binds to the 5GNNTGTNG-3 core sequence. Transcriptional repressor.
genes like me logo Genes that share phenotypes with IKZF5: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for IKZF5 Gene

Localization for IKZF5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for IKZF5 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for IKZF5 Gene COMPARTMENTS Subcellular localization image for IKZF5 gene
Compartment Confidence
nucleus 5
cytosol 3
plasma membrane 2

No data available for Gene Ontology (GO) - Cellular Components for IKZF5 Gene

Pathways & Interactions for IKZF5 Gene

SuperPathways for IKZF5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for IKZF5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IKZF5 Gene

Drugs & Compounds for IKZF5 Gene

No Compound Related Data Available

Transcripts for IKZF5 Gene

Unigene Clusters for IKZF5 Gene

IKAROS family zinc finger 5 (Pegasus):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IKZF5 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b ^ 8a · 8b
SP1: - - - - - -
SP2: - - -
SP3: - - - -
SP4: - - - - -
SP5: - - -
SP6:
SP7: - -
SP8:

Relevant External Links for IKZF5 Gene

GeneLoc Exon Structure for
IKZF5
ECgene alternative splicing isoforms for
IKZF5

Expression for IKZF5 Gene

mRNA expression in normal human tissues for IKZF5 Gene

Protein differential expression in normal tissues from HIPED for IKZF5 Gene

This gene is overexpressed in Adrenal (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for IKZF5 Gene



SOURCE GeneReport for Unigene cluster for IKZF5 Gene Hs.501289

mRNA Expression by UniProt/SwissProt for IKZF5 Gene

Q9H5V7-IKZF5_HUMAN
Tissue specificity: Expressed in brain, heart, skeletal muscle, kidney, and liver. Expressed in the hematopoietic cell lines MOLT-4, NALM-6 and K-562. Highly expressed in THP-1 and M-07e cell lines, which have characteristics of myeloid and early megakaryocytic cells respectively.
genes like me logo Genes that share expression patterns with IKZF5: view

Protein tissue co-expression partners for IKZF5 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for IKZF5 Gene

Orthologs for IKZF5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for IKZF5 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia IKZF5 35
  • 91.81 (n)
  • 97.37 (a)
IKZF5 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia IKZF5 35
  • 93.79 (n)
  • 98.57 (a)
IKZF5 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ikzf5 35
  • 91.25 (n)
  • 96.9 (a)
Ikzf5 16
Ikzf5 36
  • 97 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia IKZF5 35
  • 99.68 (n)
  • 99.76 (a)
IKZF5 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ikzf5 35
  • 92.28 (n)
  • 98.57 (a)
oppossum
(Monodelphis domestica)
Mammalia IKZF5 36
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia IKZF5 36
  • 95 (a)
OneToOne
chicken
(Gallus gallus)
Aves IKZF5 35
  • 82.9 (n)
  • 93.08 (a)
IKZF5 36
  • 93 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia IKZF5 36
  • 91 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ikzf5 35
  • 75.66 (n)
  • 87.11 (a)
zebrafish
(Danio rerio)
Actinopterygii ikzf5 35
  • 67.49 (n)
  • 70.79 (a)
ikzf5 36
  • 68 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.781 36
  • 18 (a)
OneToOne
Species with no ortholog for IKZF5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for IKZF5 Gene

ENSEMBL:
Gene Tree for IKZF5 (if available)
TreeFam:
Gene Tree for IKZF5 (if available)

Paralogs for IKZF5 Gene

Paralogs for IKZF5 Gene

genes like me logo Genes that share paralogs with IKZF5: view

Variants for IKZF5 Gene

Sequence variations from dbSNP and Humsavar for IKZF5 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs9423245 -- 122,999,177(+) TGACA(A/G)AAGGA intron-variant
rs9423303 -- 123,002,247(+) GGCGC(A/G)GTGGC intron-variant
rs9423304 -- 123,003,214(+) ttttt(A/G)gtaga intron-variant
rs9423305 -- 123,003,452(+) CTACC(A/C/G)GATAT intron-variant
rs9423306 -- 123,003,680(+) AACTT(A/G)GATTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IKZF5 Gene

Variant ID Type Subtype PubMed ID
nsv832010 CNV Gain 17160897
nsv7586 CNV Insertion 18451855

Variation tolerance for IKZF5 Gene

Residual Variation Intolerance Score: 23.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.88; 18.42% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for IKZF5 Gene

HapMap Linkage Disequilibrium report
IKZF5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IKZF5 Gene

Disorders for IKZF5 Gene

Relevant External Links for IKZF5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IKZF5

No disorders were found for IKZF5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IKZF5 Gene

Publications for IKZF5 Gene

  1. Eos and pegasus, two members of the Ikaros family of proteins with distinct DNA binding activities. (PMID: 10978333) Perdomo J. … Crossley M. (J. Biol. Chem. 2000) 2 3 4 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  3. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  4. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for IKZF5 Gene

Sources for IKZF5 Gene

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