IKZF4 Gene
protein-coding GIFtS: 50
GCID: GC12P056414
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IKAROS family zinc finger 4 (Eos)(Previous names: zinc finger protein, subfamily 1A, 4 (Eos) )
(Previous symbol: ZNFN1A4)
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Aliases
for IKZF4 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| IKAROS Family Zinc Finger 4 (Eos)1 2 | | KIAA17823 5 | | ZNFN1A41 2 3 5 | | Eos1 | | Zinc Finger Protein, Subfamily 1A, 4 (Eos)1 2 | | Zinc Finger Protein Eos2 | | Ikaros Family Zinc Finger Protein 42 3 | | Zinc Finger Transcription Factor Eos2 | | EOS2 5 | | |
Export aliases for IKZF4 gene to outside databasesPrevious GC identifers: GC12P054705 GC12P053453 |
Summaries
for IKZF4 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for IKZF4:
Members of the Ikaros (ZNFN1A1; MIM 603023) family of transcription factors, which includes Eos, are expressed inlymphocytes and are implicated in the control of lymphoid development.(supplied by OMIM, Jul 2002)
UniProtKB/Swiss-Prot: IKZF4_HUMAN, Q9H2S9Function: DNA-binding protein that binds to the 5'GGGAATRCC-3' Ikaros-binding sequence. Transcriptional repressor.Interacts with SPI1 and MITF to repress transcription of the CTSK and ACP5 promoters via recruitment of corepressorsSIN3A and CTBP2. May be involved in the development of central and peripheral nervous systems
Gene Wiki entry for IKZF4
|
Genomic Views
for IKZF4 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000012.11 NC_018923.1 NT_029419.12
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the IKZF4 gene promoter:
GATA-3 STAT5A AP-2gamma GATA-2 GATA-1 FAC1 Nkx6-1 AP-2beta AP-2alpha AP-2alphaA
Other transcription factors
Search SABiosciences Chromatin IP Primers for IKZF4
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IKZF4 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 12q13 Ensembl cytogenetic band: 12q13.2 HGNC cytogenetic band: 12q13IKZF4 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 12 GeneLoc Exon Structure GeneLoc location for GC12P056414: view genomic region
(about GC identifiers)
Start:
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56,401,443 bp from pter |
End:
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56,432,219 bp from pter |
Size:
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30,777 bases |
Orientation:
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plus strand |
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Proteins
for IKZF4 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: IKZF4_HUMAN, Q9H2S9 (See
protein sequence)Recommended Name: Zinc finger protein Eos Size: 585 amino acids; 64106 Da
Subunit: Self-associates. Interacts with other family members; IKZF1, IKZF2, IKZF3 AND IKZF5. Interacts with CTBP2,SPI1 and MITF (By similarity)
Subcellular location: Nucleus
Miscellaneous: 'Eos' means 'rising sun' in Greek
Sequence caution: Sequence=AAG39221.1; Type=Erroneous initiation; Sequence=BAB47411.1; Type=Erroneous initiation;
Secondary accessions: Q96JP3Alternative splicing: 2 isoforms: Q9H2S9-1 Q9H2S9-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for IKZF4: NX_Q9H2S9
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9H2S9
IKZF4 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_071910.3
ENSEMBL proteins: ENSP00000262032 ENSP00000449168 ENSP00000449857 ENSP00000448419 ENSP00000450020 ENSP00000412101
Human Recombinant Protein Products for IKZF4:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table
IKZF4 for ontologies About GeneDecksing
IKZF4 Antibody Products:
Assay Products for IKZF4: |
Protein
Domains /
Families
for IKZF4 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
IKZF4 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q9H2S9ProtoNet protein and cluster: Q9H2S9 UniProtKB/Swiss-Prot: IKZF4_HUMAN, Q9H2S9Domain: The N-terminal zinc fingers are involved in sequence-specific DNA binding and heterotypic associations withother family membersDomain: C-terminal zinc fingers mediate homodimerizationSimilarity: Belongs to the Ikaros C2H2-type zinc-finger protein familySimilarity: Contains 6 C2H2-type zinc fingers |
Function
for IKZF4 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: IKZF4_HUMAN, Q9H2S9Function: DNA-binding protein that binds to the 5'GGGAATRCC-3' Ikaros-binding sequence. Transcriptional repressor.Interacts with SPI1 and MITF to repress transcription of the CTSK and ACP5 promoters via recruitment of corepressorsSIN3A and CTBP2. May be involved in the development of central and peripheral nervous systems Gene Ontology (GO): 5/7 molecular function terms (GO ID links to tree view) (see all 7): About this table
IKZF4 for ontologies About GeneDecksing
Phenotypes:
1 GenomeRNAi human phenotype for IKZF4:
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for IKZF4 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for IKZF4 (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IKZF4 |
|
Pathways & Interactions
for IKZF4 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for IKZF4
STRING Interaction
Network Preview (showing 5 interactants - click image to see 16)
5/17 Interacting proteins for IKZF4 (Q9H2S93 ENSP000002620324) via UniProtKB, MINT, STRING, and/or I2D (see all 17)About this table
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006351 | transcription, DNA-dependent |
IEA | -- | | GO:0045892 | negative regulation of transcription, DNA-dependent |
TAS | 10978333 |
IKZF4 for ontologies About GeneDecksing
|
Drugs & Compounds
for IKZF4 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for IKZF4
Search CenterWatch for drugs/clinical trials and news about IKZF4
|
Transcripts
for IKZF4 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for IKZF4 gene: NM_022465.3 Unigene Cluster for IKZF4: IKAROS family zinc finger 4 (Eos) Hs.553221 [show with all ESTs]Unigene Representative Sequence: NM_02246513 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000262032(uc010sqa.1 uc001sjb.1 uc001sjc.1 uc001sjd.1 uc009zoi.1 uc001sje.1)
ENST00000548601 ENST00000550860 ENST00000552689 ENST00000549519 ENST00000551103
ENST00000547167 ENST00000547791 ENST00000547668 ENST00000551701 ENST00000551124
ENST00000547556 ENST00000431367
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for IKZF4 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for IKZF4 (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: IKZF4 (NM_022465) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for IKZF4 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat IKZF4 |
Additional cDNA sequence: AB058685.1 AF230809.1 AK055063.1 AK055970.1 AK122880.1 AK314543.1 BX647761.1 6 DOTS entries: DT.442819 DT.100741553 DT.121175828 DT.97829504 DT.121175829 DT.40128891 24/100 AceView cDNA sequences (see all 100): AI990392 AW193810 BX647761 BM675405 BX118741 NM_022465 AI767303 AI857519 BM682475 AK055063 AA603643 CK819495 AW518574 AB058685 AW071737 CK430142 AW772649 AI014969 AI861774 AI346934 BF435416 BM675032 AK055970 AW014357
GeneLoc Exon Structure
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Expression
for IKZF4 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| IKZF4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AGTAATTTAA
About this image
See IKZF4 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for IKZF4
SOURCE GeneReport for Unigene cluster: Hs.553221
UniProtKB/Swiss-Prot: IKZF4_HUMAN, Q9H2S9Tissue specificity: Highly expressed in skeletal muscle, low levels of expression in heart, thymus, kidney, liver, andspleen. Expressed in the hematopoietic cell lines MOLT-4, NALM-6 and K-562. Highly expressed in THP-1 and M-07e celllines, which have characteristics of myeloid and early megakaryocytic cells respectively
SABiosciences Custom PCR Arrays for IKZF4
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for IKZF4
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat IKZF4 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IKZF4 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IKZF4 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IKZF4 |
Orthologs
for IKZF4 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for IKZF4 gene from 2/12 species (see all 12) About this table
ENSEMBL Gene Tree for IKZF4 (if available)
TreeFam Gene Tree for IKZF4 (if available) |
Paralogs
for IKZF4 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for IKZF4 gene
- IKZF52 IKZF12 IKZF32 IKZF22 TRPS12
18/39 SIMAP similar genes for IKZF4 using alignment to 4 protein entries: IKZF4_HUMAN (see all proteins)
(see all similar genes):ZNFN1A1 kr-znf3 IKZF1 ZNF55 ZNFN1A2 IKZF2
ZFS-5 A-328A3.4 ZNF808 smap-7 IKZF3 ZNF
DKFZp434J0650 DKFZp666C237 DKFZp686M04222 PLAGL1 ZNF78L1 ZNF844
IKZF4 for paralogs About GeneDecksing
|
Genomic Variants
for IKZF4 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 12 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for IKZF4 (56401443 - 56432219 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for IKZF4: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing IKZF4 |
|
Disorders
/ Diseases
for IKZF4 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
IKZF4 for disorders About GeneDecksing
OMIM gene information: 606239
OMIM disorders: --
2  diseases for IKZF4: About MalaCardsalopecia areata alopecia
1 disease from the University of Copenhagen DISEASES database for IKZF4:Alopecia areata Human Genome Epidemiology (HuGE) Navigator: IKZF4 (3 documents)
Export disorders for IKZF4 gene to outside databases
|
Publications
for IKZF4 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for IKZF4 gene, integrated from 9 sources (see all 16):
(articles sorted by number of sources associating them with IKZF4) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Eos and pegasus, two members of the Ikaros family of proteins with distinct DNA binding activities. (PubMed id 10978333)1, 2, 3, 9 Perdomo J.... Crossley M. (2000)
- A molecular dissection of the repression circuitry of Ikaros. (PubMed id 12015313)1, 2 Koipally J. and Georgopoulos K. (2002)
- The Ikaros family protein Eos associates with C-terminal-binding protein corepressors. (PubMed id 12444977)1, 2 Perdomo J. and Crossley M. (2002)
- Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 11347906)1, 2 Nagase T.... Ohara O. (2001)
- Genome-wide association analyses identify 13 new susce ptibility loci for generalized vitiligo. (PubMed id 22561518)1 Jin Y....Spritz R.A. (2012)
- Genome-wide association analysis of autoantibody posit ivity in type 1 diabetes cases. (PubMed id 21829393)1 Plagnol V....Todd J.A. (2011)
- Genome-wide association study identifies three new sus ceptibility loci for adult asthma in the Japanese population. (PubMed id 21804548)1 Hirota T....Tamari M. (2011)
- Genome-wide association study in alopecia areata impl icates both innate and adaptive immunity. (PubMed id 20596022)1 Petukhova L....Christiano A.M. (2010)
- Eos mediates Foxp3-dependent gene silencing in CD4+ r egulatory T cells. (PubMed id 19696312)1 Pan F....Pardoll D.M. (2009)
- A protein-protein interaction network of transcription factors acting during liver cell proliferation. (PubMed id 18255255)1 Gao J....Yu Y. (2008)
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External Searches for IKZF4 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing IKZF4 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing IKZF4 gene
(According to HUGE)
About This Section
| |
Specialized Databases showing IKZF4 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for IKZF4 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for IKZF4 gene:
Search GeneIP for patents involving IKZF4
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for IKZF4 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat IKZF4 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing IKZF4 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IKZF4 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat IKZF4 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IKZF4 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IKZF4 |
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