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Aliases for IGSF11-AS1 Gene

Subcategory (RNA class) for IGSF11-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IGSF11-AS1 Gene

  • IGSF11 Antisense RNA 1 2 3 5
  • IGSF11 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for IGSF11-AS1 Gene

Previous GeneCards Identifiers for IGSF11-AS1 Gene

  • GC03P118663

Summaries for IGSF11-AS1 Gene

GeneCards Summary for IGSF11-AS1 Gene

IGSF11-AS1 (IGSF11 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGSF11-AS1 Gene

Genomics for IGSF11-AS1 Gene

Regulatory Elements for IGSF11-AS1 Gene

Enhancers for IGSF11-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G118962 0.7 dbSUPER 12.3 +25.1 25112 11.8 HDAC1 PKNOX1 TAL1 TEAD4 EBF1 ZNF644 FOSL1 GATA2 SMARCE1 USF2 IGSF11-AS1 IGSF11 COX17 GC03M119012
GH03G118991 0.6 ENCODE dbSUPER 10.6 +48.9 48916 0.2 CEBPB IGSF11-AS1 GC03M119012
GH03G118974 0.5 dbSUPER 11.7 +31.6 31570 1.1 RFX1 SMARCA4 FOXJ2 BMI1 IGSF11-AS1 GC03M119012
GH03G118992 0.5 ENCODE dbSUPER 11.5 +48.3 48276 0.2 IGSF11-AS1 GC03M119012
GH03G118976 0.2 dbSUPER 11.7 +34.8 34758 2.4 IGSF11-AS1 IGSF11 GC03M119012
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IGSF11-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for IGSF11-AS1 Gene

Chromosome:
3
Start:
118,943,073 bp from pter
End:
118,948,241 bp from pter
Size:
5,169 bases
Orientation:
Plus strand

Genomic View for IGSF11-AS1 Gene

Genes around IGSF11-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGSF11-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGSF11-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGSF11-AS1 Gene

Proteins for IGSF11-AS1 Gene

Post-translational modifications for IGSF11-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IGSF11-AS1 Gene

Domains & Families for IGSF11-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGSF11-AS1 Gene

Function for IGSF11-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGSF11-AS1 Gene

Localization for IGSF11-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for IGSF11-AS1 Gene

Pathways & Interactions for IGSF11-AS1 Gene

SuperPathways for IGSF11-AS1 Gene

No Data Available

Interacting Proteins for IGSF11-AS1 Gene

Gene Ontology (GO) - Biological Process for IGSF11-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IGSF11-AS1 Gene

Drugs & Compounds for IGSF11-AS1 Gene

No Compound Related Data Available

Transcripts for IGSF11-AS1 Gene

mRNA/cDNA for IGSF11-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IGSF11-AS1 Gene

IGSF11 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IGSF11-AS1 Gene

No ASD Table

Relevant External Links for IGSF11-AS1 Gene

GeneLoc Exon Structure for
IGSF11-AS1
ECgene alternative splicing isoforms for
IGSF11-AS1

Expression for IGSF11-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IGSF11-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IGSF11-AS1 Gene

This gene is overexpressed in Testis (x52.1).

SOURCE GeneReport for Unigene cluster for IGSF11-AS1 Gene:

Hs.660823
genes like me logo Genes that share expression patterns with IGSF11-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGSF11-AS1 Gene

Orthologs for IGSF11-AS1 Gene

Evolution for IGSF11-AS1 Gene

ENSEMBL:
Gene Tree for IGSF11-AS1 (if available)
TreeFam:
Gene Tree for IGSF11-AS1 (if available)

No data available for Orthologs for IGSF11-AS1 Gene

Paralogs for IGSF11-AS1 Gene

No data available for Paralogs for IGSF11-AS1 Gene

Variants for IGSF11-AS1 Gene

Sequence variations from dbSNP and Humsavar for IGSF11-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000031433 -- 118,946,585(+) GTCAT(A/G)TTATA intron-variant
rs1000984751 -- 118,945,941(+) TTTTT(A/T)AAATA intron-variant, nc-transcript-variant
rs1001087462 -- 118,945,401(+) GTTAT(C/T)ACATA intron-variant
rs1001723154 -- 118,942,014(+) CATAA(A/G)GGAAG intron-variant, upstream-variant-2KB
rs1001834521 -- 118,946,803(+) TTAAC(A/G)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IGSF11-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1011135 CNV gain 25217958

Relevant External Links for IGSF11-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGSF11-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IGSF11-AS1 Gene

Disorders for IGSF11-AS1 Gene

Relevant External Links for IGSF11-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IGSF11-AS1

No disorders were found for IGSF11-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IGSF11-AS1 Gene

Publications for IGSF11-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for IGSF11-AS1 Gene

Sources for IGSF11-AS1 Gene

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