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Aliases for IGSF11 Gene

Aliases for IGSF11 Gene

  • Immunoglobulin Superfamily Member 11 2 3 5
  • Brain And Testis-Specific Immunoglobulin Superfamily Protein 3 4
  • V-Set And Immunoglobulin Domain-Containing Protein 3 3 4
  • Cancer/Testis Antigen 119 2 3
  • BT-IgSF 3 4
  • CXADRL1 3 4
  • VSIG3 3 4
  • Brain And Testis-Specific Immunoglobin Superfamily Protein 3
  • V-Set And Immunoglobulin Domain Containing 3 3
  • Immunoglobulin Superfamily, Member 11 2
  • CXADR Like 1 3
  • IgSF13 3
  • BTIGSF 4
  • IgSF11 4
  • CT119 3

External Ids for IGSF11 Gene

Previous GeneCards Identifiers for IGSF11 Gene

  • GC03M118248
  • GC03M119900
  • GC03M119941
  • GC03M119940
  • GC03M120102
  • GC03M118619
  • GC03M115994

Summaries for IGSF11 Gene

Entrez Gene Summary for IGSF11 Gene

  • IGSF11 is an immunoglobulin (Ig) superfamily member that is preferentially expressed in brain and testis. It shares significant homology with coxsackievirus and adenovirus receptor (CXADR; MIM 602621) and endothelial cell-selective adhesion molecule (ESAM).[supplied by OMIM, Apr 2005]

GeneCards Summary for IGSF11 Gene

IGSF11 (Immunoglobulin Superfamily Member 11) is a Protein Coding gene. An important paralog of this gene is CXADR.

UniProtKB/Swiss-Prot for IGSF11 Gene

  • Functions as a cell adhesion molecule through homophilic interaction. Stimulates cell growth.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGSF11 Gene

Genomics for IGSF11 Gene

Regulatory Elements for IGSF11 Gene

Enhancers for IGSF11 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F119210 0.8 ENCODE 18.5 -65.3 -65309 2.4 HDAC1 PKNOX1 TAL1 ZBTB11 DPF2 ARID1B JUND HNF1A NCOR1 SMARCA4 IGSF11 B4GALT4 UPK1B B4GALT4-AS1
GH03F119194 0.5 ENCODE 14.9 -48.7 -48672 1.4 ZNF512 NR3C1 IGSF11 B4GALT4-AS1 B4GALT4 UPK1B
GH03F119226 0.5 ENCODE 14.9 -81.3 -81294 1.6 RFX1 ZBTB33 RAD21 IGSF11 B4GALT4 B4GALT4-AS1 GC03M119181
GH03F119257 1 Ensembl ENCODE 10.9 -111.8 -111820 3.0 SRF DPF2 GATA3 IKZF1 NFYB PBX2 POU5F1 PRDM10 KDM1A SPI1 IGSF11 B4GALT4 ARHGAP31
GH03F119309 1.2 Ensembl ENCODE 8.7 -164.9 -164948 3.8 ATF1 BHLHE40 ZEB2 ARID1B GATA3 JUND ATF3 IKZF1 GLIS1 FOS RNU6-1127P IGSF11 B4GALT4 ARHGAP31 ARHGAP31-AS1 PIR60663
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around IGSF11 on UCSC Golden Path with GeneCards custom track

Genomic Location for IGSF11 Gene

Chromosome:
3
Start:
118,900,557 bp from pter
End:
119,146,068 bp from pter
Size:
245,512 bases
Orientation:
Minus strand

Genomic View for IGSF11 Gene

Genes around IGSF11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGSF11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGSF11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGSF11 Gene

Proteins for IGSF11 Gene

  • Protein details for IGSF11 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5DX21-IGS11_HUMAN
    Recommended name:
    Immunoglobulin superfamily member 11
    Protein Accession:
    Q5DX21
    Secondary Accessions:
    • C9JZN0
    • Q8N4F1
    • Q8N7T8
    • Q8NDD2

    Protein attributes for IGSF11 Gene

    Size:
    431 amino acids
    Molecular mass:
    46120 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • The last 20 cytoplasmic amino acids are not required for the cell adhesion function.

    Alternative splice isoforms for IGSF11 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for IGSF11 Gene

Post-translational modifications for IGSF11 Gene

No data available for DME Specific Peptides for IGSF11 Gene

Domains & Families for IGSF11 Gene

Gene Families for IGSF11 Gene

Suggested Antigen Peptide Sequences for IGSF11 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5DX21

UniProtKB/Swiss-Prot:

IGS11_HUMAN :
  • Contains 1 Ig-like C2-type (immunoglobulin-like) domain.
Domain:
  • Contains 1 Ig-like C2-type (immunoglobulin-like) domain.
  • Contains 1 Ig-like V-type (immunoglobulin-like) domain.
genes like me logo Genes that share domains with IGSF11: view

Function for IGSF11 Gene

Molecular function for IGSF11 Gene

UniProtKB/Swiss-Prot Function:
Functions as a cell adhesion molecule through homophilic interaction. Stimulates cell growth.
genes like me logo Genes that share phenotypes with IGSF11: view

Animal Models for IGSF11 Gene

MGI Knock Outs for IGSF11:

Animal Model Products

  • Taconic Biosciences Mouse Models for IGSF11

miRNA for IGSF11 Gene

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for IGSF11 Gene

Localization for IGSF11 Gene

Subcellular locations from UniProtKB/Swiss-Prot for IGSF11 Gene

Cell membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for IGSF11 Gene COMPARTMENTS Subcellular localization image for IGSF11 gene
Compartment Confidence
extracellular 5
plasma membrane 4
peroxisome 1

Gene Ontology (GO) - Cellular Components for IGSF11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with IGSF11: view

Pathways & Interactions for IGSF11 Gene

SuperPathways for IGSF11 Gene

No Data Available

Gene Ontology (GO) - Biological Process for IGSF11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007155 cell adhesion IEA --
GO:0040008 regulation of growth IEA --
genes like me logo Genes that share ontologies with IGSF11: view

No data available for Pathways by source and SIGNOR curated interactions for IGSF11 Gene

Transcripts for IGSF11 Gene

Unigene Clusters for IGSF11 Gene

Immunoglobulin superfamily, member 11:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for IGSF11 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c
SP1: - - -
SP2: - -
SP3:
SP4: -

Relevant External Links for IGSF11 Gene

GeneLoc Exon Structure for
IGSF11
ECgene alternative splicing isoforms for
IGSF11

Expression for IGSF11 Gene

mRNA expression in normal human tissues for IGSF11 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for IGSF11 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.0) and Testis (x4.5).

Protein differential expression in normal tissues from HIPED for IGSF11 Gene

This gene is overexpressed in Frontal cortex (39.1) and Adrenal (27.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for IGSF11 Gene



Protein tissue co-expression partners for IGSF11 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of IGSF11 Gene:

IGSF11

SOURCE GeneReport for Unigene cluster for IGSF11 Gene:

Hs.112873

mRNA Expression by UniProt/SwissProt for IGSF11 Gene:

Q5DX21-IGS11_HUMAN
Tissue specificity: Abundantly expressed in testis and ovary and to a lower extent in brain, kidney and skeletal muscle.
genes like me logo Genes that share expression patterns with IGSF11: view

Primer Products

Orthologs for IGSF11 Gene

This gene was present in the common ancestor of chordates.

Orthologs for IGSF11 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia IGSF11 34 35
  • 99.46 (n)
dog
(Canis familiaris)
Mammalia IGSF11 34 35
  • 91.87 (n)
cow
(Bos Taurus)
Mammalia IGSF11 34 35
  • 90.02 (n)
mouse
(Mus musculus)
Mammalia Igsf11 34 16 35
  • 86.37 (n)
rat
(Rattus norvegicus)
Mammalia Igsf11 34
  • 85.9 (n)
oppossum
(Monodelphis domestica)
Mammalia IGSF11 35
  • 82 (a)
OneToOne
chicken
(Gallus gallus)
Aves IGSF11 34 35
  • 73.59 (n)
lizard
(Anolis carolinensis)
Reptilia IGSF11 35
  • 74 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia igsf11 34
  • 63.16 (n)
zebrafish
(Danio rerio)
Actinopterygii igsf11 34 35
  • 64.69 (n)
Species where no ortholog for IGSF11 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for IGSF11 Gene

ENSEMBL:
Gene Tree for IGSF11 (if available)
TreeFam:
Gene Tree for IGSF11 (if available)

Paralogs for IGSF11 Gene

Paralogs for IGSF11 Gene

(6) SIMAP similar genes for IGSF11 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with IGSF11: view

Variants for IGSF11 Gene

Sequence variations from dbSNP and Humsavar for IGSF11 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10049288 -- 119,146,065(+) CTGAC(A/G)CACGC upstream-variant-2KB, utr-variant-5-prime
rs1016284 -- 118,987,317(+) AAATG(A/G)GTGAG intron-variant
rs10212391 -- 118,956,161(+) aaaaa(A/G)ttagg intron-variant
rs10222612 -- 119,118,432(+) ctttc(A/G)gccac intron-variant
rs1043626 -- 118,902,395(-) CAAAG(A/G)AGAAG downstream-variant-500B, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for IGSF11 Gene

Variant ID Type Subtype PubMed ID
dgv1403e212 CNV gain 25503493
dgv4844n100 CNV gain 25217958
dgv4845n100 CNV gain 25217958
dgv4846n100 CNV gain 25217958
dgv618n27 CNV gain 19166990
dgv8516n54 CNV gain 21841781
dgv8517n54 CNV gain 21841781
dgv927e214 CNV loss 21293372
esv25249 CNV loss 19812545
esv2725820 CNV deletion 23290073
esv2763752 CNV gain 21179565
esv33349 CNV gain 17666407
esv3351388 CNV insertion 20981092
esv3392030 CNV duplication 20981092
esv3597544 CNV gain 21293372
esv3597545 CNV gain 21293372
esv3597550 CNV gain 21293372
esv3597551 CNV gain 21293372
esv3597552 CNV loss 21293372
esv3597553 CNV loss 21293372
nsv1011135 CNV gain 25217958
nsv1139800 CNV duplication 24896259
nsv1141440 CNV duplication 24896259
nsv1152225 CNV duplication 26484159
nsv3960 CNV insertion 18451855
nsv3961 CNV deletion 18451855
nsv470860 CNV gain 18288195
nsv521267 CNV gain 19592680
nsv523926 CNV gain 19592680
nsv591350 CNV gain 21841781
nsv822226 CNV loss 20364138
nsv829692 CNV loss 17160897

Variation tolerance for IGSF11 Gene

Residual Variation Intolerance Score: 40.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.34; 85.36% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for IGSF11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGSF11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IGSF11 Gene

Disorders for IGSF11 Gene

Relevant External Links for IGSF11

Genetic Association Database (GAD)
IGSF11
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IGSF11

No disorders were found for IGSF11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IGSF11 Gene

Publications for IGSF11 Gene

  1. BT-IgSF, a novel immunoglobulin superfamily protein, functions as a cell adhesion molecule. (PMID: 15795899) Harada H. … Okada S. (J. Cell. Physiol. 2005) 3 4 22 64
  2. Identification of immunoglobulin superfamily 11 (IGSF11) as a novel target for cancer immunotherapy of gastrointestinal and hepatocellular carcinomas. (PMID: 16108831) Watanabe T. … Nakamura Y. (Cancer Sci. 2005) 3 4 22 64
  3. IGSF11 gene, frequently up-regulated in intestinal-type gastric cancer, encodes adhesion molecule homologous to CXADR, FLJ22415 and ESAM. (PMID: 12851705) Katoh M. … Katoh M. (Int. J. Oncol. 2003) 3 4 22 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. Molecular cloning of a novel immunoglobulin superfamily gene preferentially expressed by brain and testis. (PMID: 12207903) Suzu S. … Motoyoshi K. (Biochem. Biophys. Res. Commun. 2002) 2 3 64

Products for IGSF11 Gene

Sources for IGSF11 Gene

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