Free for academic non-profit institutions. Other users need a Commercial license

Aliases for IGLV5-48 Gene

Aliases for IGLV5-48 Gene

  • Immunoglobulin Lambda Variable 5-48 (Non-Functional) 2 3 5
  • Immunoglobulin Lambda Variable 5-48 2
  • IGLV548 3
  • V4-3 3

External Ids for IGLV5-48 Gene

Previous GeneCards Identifiers for IGLV5-48 Gene

  • GC22U990132
  • GC22P021032
  • GC22P021037
  • GC22P022708
  • GC22P022709
  • GC22P022717
  • GC22P022727

Summaries for IGLV5-48 Gene

GeneCards Summary for IGLV5-48 Gene

IGLV5-48 (Immunoglobulin Lambda Variable 5-48 (Non-Functional)) is a Protein Coding gene. An important paralog of this gene is IGLV5-45.

Additional gene information for IGLV5-48 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGLV5-48 Gene

Genomics for IGLV5-48 Gene

GeneHancer (GH) Regulatory Elements for IGLV5-48 Gene

Promoters and enhancers for IGLV5-48 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I022357 Enhancer 1.1 Ensembl ENCODE 0.8 +4.7 4672 0.8 SMAD1 ARNT GLI4 ZNF2 TCF12 GLIS2 ZNF143 ATF7 SP3 NCOA1 IGLV1-47 TOP3B IGLV5-52 PPIL2 ENSG00000234630 ENSG00000272779 ENSG00000225544 IGLV5-48 IGL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IGLV5-48 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IGLV5-48 Gene

Genomic Locations for IGLV5-48 Gene
chr22:22,352,940-22,353,433
(GRCh38/hg38)
Size:
494 bases
Orientation:
Plus strand
chr22:22,707,289-22,707,781
(GRCh37/hg19)

Genomic View for IGLV5-48 Gene

Genes around IGLV5-48 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGLV5-48 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGLV5-48 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGLV5-48 Gene

Proteins for IGLV5-48 Gene

  • Protein details for IGLV5-48 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A075B6I7
    Recommended name:
    Immunoglobulin lambda variable 5-48 (non-functional)
    Protein Accession:
    A0A075B6I7

    Protein attributes for IGLV5-48 Gene

    Size:
    105 amino acids
    Molecular mass:
    11247 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IGLV5-48 Gene

Post-translational modifications for IGLV5-48 Gene

No Post-translational modifications

Other Protein References for IGLV5-48 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for IGLV5-48 Gene

Domains & Families for IGLV5-48 Gene

Gene Families for IGLV5-48 Gene

Protein Domains for IGLV5-48 Gene

Suggested Antigen Peptide Sequences for IGLV5-48 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IGLV5-48: view

No data available for UniProtKB/Swiss-Prot for IGLV5-48 Gene

Function for IGLV5-48 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGLV5-48 Gene

Localization for IGLV5-48 Gene

Gene Ontology (GO) - Cellular Components for IGLV5-48 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IBA --
genes like me logo Genes that share ontologies with IGLV5-48: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for IGLV5-48 Gene

Pathways & Interactions for IGLV5-48 Gene

SuperPathways for IGLV5-48 Gene

No Data Available

Interacting Proteins for IGLV5-48 Gene

Gene Ontology (GO) - Biological Process for IGLV5-48 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006955 immune response IBA --
genes like me logo Genes that share ontologies with IGLV5-48: view

No data available for Pathways by source and SIGNOR curated interactions for IGLV5-48 Gene

Drugs & Compounds for IGLV5-48 Gene

No Compound Related Data Available

Transcripts for IGLV5-48 Gene

mRNA/cDNA for IGLV5-48 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for IGLV5-48 Gene

No ASD Table

Relevant External Links for IGLV5-48 Gene

GeneLoc Exon Structure for
IGLV5-48
ECgene alternative splicing isoforms for
IGLV5-48

Expression for IGLV5-48 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IGLV5-48 Gene

mRNA differential expression in normal tissues according to GTEx for IGLV5-48 Gene

This gene is overexpressed in Spleen (x17.2), Minor Salivary Gland (x8.4), Colon - Transverse (x6.2), Whole Blood (x5.2), and Small Intestine - Terminal Ileum (x4.6).
genes like me logo Genes that share expression patterns with IGLV5-48: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGLV5-48 Gene

Orthologs for IGLV5-48 Gene

This gene was present in the common ancestor of chordates.

Orthologs for IGLV5-48 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 34
  • 60 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 37 (a)
OneToMany
Species where no ortholog for IGLV5-48 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IGLV5-48 Gene

ENSEMBL:
Gene Tree for IGLV5-48 (if available)
TreeFam:
Gene Tree for IGLV5-48 (if available)

Paralogs for IGLV5-48 Gene

Pseudogenes.org Pseudogenes for IGLV5-48 Gene

genes like me logo Genes that share paralogs with IGLV5-48: view

Variants for IGLV5-48 Gene

Additional Variant Information for IGLV5-48 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGLV5-48

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IGLV5-48 Gene

Disorders for IGLV5-48 Gene

No disorders were found for IGLV5-48 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for IGLV5-48 Gene

Publications for IGLV5-48 Gene

  1. One-megabase sequence analysis of the human immunoglobulin lambda gene locus. (PMID: 9074928) Kawasaki K … Shimizu N (Genome research 1997) 3 58
  2. Sequence and evolution of the human germline V lambda repertoire. (PMID: 8951372) Williams SC … Winter G (Journal of molecular biology 1996) 3 58

Products for IGLV5-48 Gene

Sources for IGLV5-48 Gene

Content
Loading form....