IGLC2 Gene
protein-coding GIFtS : 30
GCID: GC22 P023243
immunoglobulin lambda constant 2 (Kern-Oz- marker) (Previous symbol: IGLC )
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Aliasesfor IGLC2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Immunoglobulin Lambda Constant 2 (Kern-Oz- Marker) 1 2 IGLC1 2
Export aliases for IGLC2 gene to outside databases Previous GC identifers: GC22U990026 GC22P021090 GC22P021093 GC22P021096 GC22P021100 GC22P021102 GC22P021567 GC22P021296 GC22P021574 GC22P006211
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Summariesfor IGLC2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Gene Wiki entry for IGLC2
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Genomic Viewsfor IGLC2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for IGLC2 Other transcription factors Search SABiosciences Chromatin IP Primers for IGLC2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IGLC2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 22q11.2 Ensembl cytogenetic band: 22q11.22 HGNC cytogenetic band: 22q11.2 IGLC2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 22 GeneLoc Exon Structure
GeneLoc location for GC22P023243: view genomic region
(about GC identifiers )
Start:
23,243,156 bp from pter
End:
23,243,617 bp from pter
Size:
462 bases
Orientation:
plus strand
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Proteinsfor IGLC2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: LAC2_HUMAN, P0CG05 (See
protein sequence )Recommended Name: Ig lambda-2 chain C regions Size : 106 amino acids; 11294 Da
Miscellaneous : Displays the following serological isotype: Mcg-, Kern- and Oz-. The Mcg- isotype marker ischaracterized by Ala-6, Ser-8 and Thr-57; the Ke- marker by Ser-46 and the Oz- marker by Arg-83
Sequence caution : Sequence=AAA59107.1; Type=Erroneous initiation; Note=Translation N-terminally extended;Sequence=BAA20015.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAA20026.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAA20028.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=CAA36049.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=CAB38569.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=EAW59547.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=EAW59549.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
6/10 PDB 3D structures from and Proteopedia for IGLC2 (see all 10 ):1JVK (3D)
  1LIL (3D)
  1ZVO (3D)
  2JB5 (3D)
  2JB6 (3D)
  3C2A (3D)
 
Secondary accessions : A0M8Q4 P80423Explore the universe of human proteins at neXtProt for IGLC2: NX_P0CG05 IGLC2 Protein expression data from MOPED and PaxDb : About this image
ENSEMBL proteins: ENSP00000374856 Reactome Protein details: P0CG05 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
TAS -- GO:0005886 plasma membrane
TAS --
IGLC2 for ontologies About GeneDecksing IGLC2 Antibody Products: Assay Products for IGLC2:
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Protein
Domains / Familiesfor IGLC2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
IGLC2 for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P0CG05 ProtoNet protein and cluster: P0CG05
UniProtKB/Swiss-Prot: LAC2_HUMAN, P0CG05 Similarity : Contains 1 Ig-like (immunoglobulin-like) domain
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Functionfor IGLC2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: Genatlas biochemistry entry for IGLC2 : immunoglobulin,lambda,constant segment 2 (Kern-Oz-marker) Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003823 antigen binding
IEA --
IGLC2 for ontologies About GeneDecksing
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Pathways & Interactionsfor IGLC2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Cleavage of Alpha-1-Microglobulin 2 Immune System 3 Assembly of Signalosomes at the Activated BCR 4 Regulation of actin dynamics for phagocytic cup formation 5 Signaling by the B Cell Receptor (BCR)
Pathway sources See GeneCards unified pathways Show all pathways 5/21
Reactome Pathways for IGLC2 (see all 21 )
IGLC2 for pathways About GeneDecksing Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for IGLC2 STRING Interaction
Network Preview (showing 5 interactants - click image to see 24)5/24 Interacting proteins for IGLC2 (ENSP00000374856 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 24 )About this table Gene Ontology (GO): 4 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006956 complement activation
TAS -- GO:0006958 complement activation, classical pathway
TAS -- GO:0045087 innate immune response
TAS -- GO:0050776 regulation of immune response
TAS --
IGLC2 for ontologies About GeneDecksing
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Drugs & Compoundsfor IGLC2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for IGLC2 Search CenterWatch for drugs/clinical trials and news about IGLC2 / LAC2
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Transcriptsfor IGLC2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000390323 24/97 AceView cDNA sequences (see all 97 ):
AF194698 CR623617 AF194669 CR592011 AY573191 AF063703 AF194679 CR593480 CR605950 AF064507 AF194643 CR623132 L25296 L35920 AF194648 AF194645 AJ319669 AF194783 BG757949 BC033102 AB064037 AF194744 AF194737 AY043110 GeneLoc Exon Structure
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Expression for IGLC2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section IGLC2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image See IGLC2 Protein Expression from SPIRE MOPED and PaxDB SABiosciences Custom PCR Arrays for IGLC2 Primer Products: Browse OriGene genome-wide validated SYBR primer pairs Browse OriGene validated miRNA SYBR primer pairs Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat IGLC2 Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IGLC2 Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IGLC2
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Orthologsfor IGLC2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for IGLC2 gene from 2/5 species (see all 5 ) About this table
ENSEMBL Gene Tree for IGLC2 (if available)TreeFam Gene Tree for IGLC2 (if available)
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Paralogsfor IGLC2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for IGLC2 gene IGLL5 2 IGKC 2 IGLC1 2 IGLL1 2 IGLC3 2 IGLC7 2 TRBC2 2 18/36 SIMAP similar genes for IGLC2 using alignment to 1 protein entry: LAC2_HUMAN (see all similar genes ):DKFZp667J0810 IGLC3 IgLC-rG IGL@ IGLC6 IGLC7 C1 segment DKFZp781M0386 IGLC1 IGLL5 IGLL1 IGKC IGHG2 HLA-DQA1 IGHM B2M TRBC1 HLA DRB4
IGLC2 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for IGLC2 PGOHUM00000246520
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Genomic Variantsfor IGLC2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor IGLC2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
IGLC2 for disorders About GeneDecksing 2 diseases for IGLC2 : About MalaCards meningioma myeloma Export disorders for IGLC2 gene to outside databases
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Publicationsfor IGLC2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for IGLC2 gene, integrated from 9 sources (see all 19 ): (articles sorted by number of sources associating them with IGLC2) Utopia : connect your pdf to the dynamic world of online information
One-megabase sequence analysis of the human immunoglobulin lambda gene locus. (PubMed id 9074928) 1 , 2 Kawasaki K....Shimizu N. (1997) Structure and expression of the human immunoglobulin lambda genes. (PubMed id 2115572) 1 , 2 Vasicek T.J. and Leder P. (1990) Comparative studies on the structure of the light chains of human immunoglobulins. IV. Assignment of a subsubgroup. (PubMed id 6404900) 1 , 2 Kametani F....Shimizu A. (1983) Clustered arrangement of immunoglobulin lambda constant region genes in man. (PubMed id 6273747) 1 , 2 Hieter P.A.... Leder P. (1981) Structural rule of antibodies. Primary structure of a monoclonal immunoglobulin-L-chain of the lambda type, subgroup IV (Bence-Jones- protein Kern). V. The complete amino acid sequence and its genetic interpretation. (PubMed id 5549568) 1 , 2 Ponstingl H.... Hilschmann N. (1971) The amino acid sequence of a lambda type Bence-Jones protein. 3. The complete amino acid sequence and the location of the disulfide bridges. (PubMed id 4909564) 1 , 2 Titani K.... Putnam F.W. (1970) Immunoglobulin lambda-chains. The complete amino acid sequence of a Bence-Jones protein. (PubMed id 4883841) 1 , 2 Milstein C.... Jarvis J.M. (1968) Inhibition of pathologic immunoglobulin-free light ch ain production by small interfering RNA molecules. (PubMed id 20637260) 1 Phipps J.E....Wall J.S. (2010) Unraveling of the polymorphic C lambda 2-C lambda 3 amplification and the Ke+Oz- polymorphism in the human Ig lambda locus. (PubMed id 12077254) 1 van der Burg M....van Dongen J.J. (2002) Recognition of immunoglobulins by Fcgamma receptors. (PubMed id 11955599) 1 Radaev S. and Sun P. (2002)
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External Searches for IGLC2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing IGLC2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing IGLC2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing IGLC2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for IGLC2 Pharmacogenomics, SNPs, Pathways IMGT entry for IGLC2 The international I mM unoG eneT ics information system® specializing in Immunoglobulins (IG), T cell receptors (TR), Major Histocompatibility Complex (MHC) and related proteins of the immune system (RPI) of human and other vertebrate species. IMGT/GENE-DB http://www.imgt.org/IMGT_GENE-DB/GENElect?query=2+IGLC2&species=Homo+sapiens
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About This Section Patent Information for IGLC2 gene: Search GeneIP for patents involving IGLC2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor IGLC2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat IGLC2 Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing IGLC2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IGLC2 Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat IGLC2 Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IGLC2 Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IGLC2
Search Tocris compounds for IGLC2
Search ThermoFisher Antibodies for IGLC2
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat IGLC2
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