IGL@ Cluster
gene cluster GIFtS : 35
GCID: GC22 P022396
immunoglobulin lambda locus
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Aliasesfor IGL@ gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Immunoglobulin Lambda Locus 1 2 IGL1 2 IGLC62 Ig Lambda-6 Chain C Region2 Immunoglobulin Lambda Gene Cluster2
Export aliases for IGL@ gene to outside databases Previous GC identifers: GC22U990023 GC00U920621 GC22P020712 GC22P020714 GC22P020720 GC22P022381 GC22P005337 GC22P022384
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Summariesfor IGL@ gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for IGL@ : Immunoglobulins recognize foreign antigens and initiate immune responses such as phagocytosis and the complement system. Each immunoglobulin molecule consists of two identical heavy chains and two identical light chains. There are two classes of light chains, kappa and lambda. This region represents the germline organization of the lambda light chain locus. The locus includes V (variable), J (joining), and C (constant) segments. During B cell development, a recombination event at the DNA level joins a single V segment with a J segment; the C segment is later joined by splicing at the RNA level. Recombination of many different V segments with several J segments provides a wide range of antigen recognition. Additional diversity is attained by junctional diversity, resulting from the random additional of nucleotides by terminal deoxynucleotidyltransferase, and by somatic hypermutation, which occurs during B cell maturation in the spleen and lymph nodes. Several V segments and three C segments are known to be incapable of encoding a protein and are considered pseudogenes. The locus also includes several non-immunoglobulin genes, many of which are pseudogenes or are predicted by automated computational analysis or homology to other species. (provided by RefSeq, Jul 2008) Gene Wiki entry for IGL@
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Genomic Viewsfor IGL@ gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for IGL@ Other transcription factors Search SABiosciences Chromatin IP Primers for IGL@ Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IGL@
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 22q11.2 HGNC cytogenetic band: 22q11.2 IGL@ Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 22 GeneLoc Exon Structure
GeneLoc location for GC22P022396: view genomic region
(about GC identifiers )
Start:
22,380,474 bp from pter
End:
23,265,085 bp from pter
Size:
884,612 bases
Orientation:
plus strand
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Proteinsfor IGL@ gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/TrEMBL: Q567P1 (See
protein sequence )Recommended Name: IGL@ protein Size : 235 amino acids; 24800 DaUniProtKB/TrEMBL: Q5FWF9 (See
protein sequence )
Recommended Name: IGL@ protein Size : 232 amino acids; 24795 DaUniProtKB/TrEMBL: Q6GMW3 (See
protein sequence )
Recommended Name: IGL@ protein Size : 234 amino acids; 24654 DaUniProtKB/TrEMBL: Q6GMW4 (See
protein sequence )
Recommended Name: IGL@ protein Size : 233 amino acids; 24855 DaUniProtKB/TrEMBL: Q6GMX3 (See
protein sequence )
Recommended Name: IGL@ protein Size : 236 amino acids; 24700 DaUniProtKB/TrEMBL: Q6GMX4 (See
protein sequence )
Recommended Name: IGL@ protein Size : 236 amino acids; 24810 Da
1 PDB 3D structure from and Proteopedia for IGL@ :4D9L (3D)
 UniProtKB/TrEMBL: Q6IN99 (See
protein sequence )
Recommended Name: IGL@ protein Size : 235 amino acids; 24888 DaUniProtKB/TrEMBL: Q6IPQ0 (See
protein sequence )
Recommended Name: IGL@ protein Size : 236 amino acids; 24824 DaUniProtKB/TrEMBL: Q6NS95 (See
protein sequence )
Recommended Name: IGL@ protein Size : 234 amino acids; 25148 DaUniProtKB/TrEMBL: Q6PIK1 (See
protein sequence )
Recommended Name: IGL@ protein Size : 235 amino acids; 24858 DaUniProtKB/TrEMBL: Q6PIQ7 (See
protein sequence )
Recommended Name: IGL@ protein Size : 236 amino acids; 25021 DaUniProtKB/TrEMBL: Q6PJR7 (See
protein sequence )
Recommended Name: IGL@ protein Size : 139 amino acids; 14678 DaUniProtKB/TrEMBL: Q8N355 (See
protein sequence )
Recommended Name: IGL@ protein Size : 234 amino acids; 24793 DaUniProtKB/TrEMBL: Q8N5F4 (See
protein sequence )
Recommended Name: IGL@ protein Size : 233 amino acids; 24961 DaPost-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8N5F4 IGL@ Protein expression data from MOPED and PaxDb : About this image
Human Recombinant Protein Products: IGL@ Antibody Products: Assay Products for IGL@:
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Protein
Domains / Familiesfor IGL@ gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
IGL@ for domains About GeneDecksing 5/6 InterPro domains/families (see all 6 ):
Graphical View of Domain Structure for InterPro Entry Q567P1 Graphical View of Domain Structure for InterPro Entry Q5FWF9 Graphical View of Domain Structure for InterPro Entry Q6GMW3 Graphical View of Domain Structure for InterPro Entry Q6GMW4 Graphical View of Domain Structure for InterPro Entry Q6GMX3 Graphical View of Domain Structure for InterPro Entry Q6GMX4 Graphical View of Domain Structure for InterPro Entry Q6IN99 Graphical View of Domain Structure for InterPro Entry Q6IPQ0 Graphical View of Domain Structure for InterPro Entry Q6NS95 Graphical View of Domain Structure for InterPro Entry Q6PIK1 Graphical View of Domain Structure for InterPro Entry Q6PIQ7 Graphical View of Domain Structure for InterPro Entry Q6PJR7 Graphical View of Domain Structure for InterPro Entry Q8N355 Graphical View of Domain Structure for InterPro Entry Q8N5F4 ProtoNet protein and cluster: Q567P1
2 Blocks protein families : IPB003596 Immunoglobulin V-type IPB013106 Immunoglobulin V-set
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Functionfor IGL@ gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: Genatlas biochemistry entry for IGL@ : immunoglobulin lambda gene cluster (see,IGLC@,IGLV@) In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IGL@
1 GenomeRNAi human phenotype for IGL@ :Animal Models: Mouse knock-outs for IGL@: Igl tm2.1Bgmn Igl tm1.1Bgmn 3 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Igl) :
IGL@ for phenotypes About GeneDecksing
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Pathways & Interactionsfor IGL@ gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/7 super-pathways (see all 7 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Immune response_NFAT in immune response 2 Signal transduction_IP3 signaling 3 Immune response_Classical complement pathway 4 Immune response_IL-4 signaling pathway 5 Immune response CD16 signaling in NK cells
Pathway sources See GeneCards unified pathways Show all pathways 5/7 EMD Millipore Pathways for IGL@ (see all 7 )5/7 GeneGo (Thomson Reuters) Pathways for IGL@ (see all 7 )
IGL@ for pathways About GeneDecksing Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for IGL@ 1 Interacting protein for IGL@ (Q8N355 3 ) via UniProtKB, MINT, STRING, and/or I2D About this table
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Drugs & Compoundsfor IGL@ gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for IGL@ Search CenterWatch for drugs/clinical trials and news about IGL@
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Transcriptsfor IGL@ gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section GeneLoc Exon Structure
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Expression for IGL@ gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section IGL@ expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image See IGL@ Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for IGL@ SABiosciences Custom PCR Arrays for IGL@ Primer Products: Browse OriGene genome-wide validated SYBR primer pairs Browse OriGene validated miRNA SYBR primer pairs Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat IGL@ Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IGL@ Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IGL@ In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IGL@
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Orthologsfor IGL@ gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of human and mouse.
Orthologs for IGL@ gene from 1 species (see representative species ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
mouse (Mus musculus)
Mammalia
Igl5
immunoglobulin lambda chain complex
--
 
16 -
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Paralogsfor IGL@ gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor IGL@ gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 22 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for IGL@ (22380474 - 22630474 bp, first 250kb of IGL@)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for IGL@: --
SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor IGL@ gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
IGL@ for disorders About GeneDecksing 4 diseases for IGL@ : About MalaCards non-hodgkin lymphoma mantle cell lymphoma hodgkin's lymphoma neuropathy Export disorders for IGL@ gene to outside databases
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Publicationsfor IGL@ gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for IGL@ gene, integrated from 9 sources (see all 34 ): (articles sorted by number of sources associating them with IGL@) Utopia : connect your pdf to the dynamic world of online information
Chromosomal orientation of the lambda light chain locus: V lambda is proximal to C lambda in 22q11. (PubMed id 3923432) 1 , 3 Emanuel B.S....Croce C.M. (1985) Assignment of the genes for human lambda immunoglobul in chains to chromosome 22. (PubMed id 6795508) 1 , 3 Erikson J....Croce C.M. (1981) One-megabase sequence analysis of the human immunoglobulin lambda gene locus. (PubMed id 9074928) 1 , 9 Kawasaki K....Shimizu N. (1997) The lambda gene immunoglobulin repertoire of human neonatal B cells. (PubMed id 17675156) 1 , 9 Richl P....Girschick H.J. (2008) Structure and expression of the human immunoglobulin lambda genes. (PubMed id 2115572) 1 , 9 Vasicek T.J. and Leder P. (1990) Combined analysis using extended renal reference range of serum free light chain ratio and serum protein electrophoresis improves the diagnostic accuracy of multiple myeloma in renal insufficiency. (PubMed id 22503879) 1 Park J.W....Kim S.W. (2012) Higher serum levels of free kk plus l immunoglobulin l ight chains ameliorate survival of hemodialysis patients. (PubMed id 21646814) 1 Thilo F....Tepel M. (2011) CD5-positive, cyclinD1-negative mantle cell lymphoma with a translocation involving the CCND2 gene and the IGL locus. (PubMed id 21504716) 1 Shiller S.M....Saad R. (2011) Inhibition of pathologic immunoglobulin-free light ch ain production by small interfering RNA molecules. (PubMed id 20637260) 1 Phipps J.E....Wall J.S. (2010) Immunoglobulin light chain gene translocations in non-Hodgkin's lymphoma as assessed by fluorescence in situ hybridisation. (PubMed id 18005388) 1 Fujimoto Y....Taniwaki M. (2008)
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External Searches for IGL@ gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing IGL@ gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing IGL@ gene
(According to HUGE )
About This Section --
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Specialized Databases showing IGL@ gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for IGL@ Pharmacogenomics, SNPs, Pathways ATLAS Chromosomes in Cancer entry for IGL@ Genetics and Cytogenetics in Oncology and Haematology IMGT entry for IGL@ The international I mM unoG eneT ics information system® specializing in Immunoglobulins (IG), T cell receptors (TR), Major Histocompatibility Complex (MHC) and related proteins of the immune system (RPI) of human and other vertebrate species.
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About This Section Patent Information for IGL@ gene: Search GeneIP for patents involving IGL@ GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor IGL@ gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat IGL@ Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing IGL@ QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IGL@ Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat IGL@ Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IGL@ Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IGL@
Search Tocris compounds for IGL@
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IGL@
Search ThermoFisher Antibodies for IGL@
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat IGL@
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