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Aliases for IGKV6D-21 Gene

Aliases for IGKV6D-21 Gene

  • Immunoglobulin Kappa Variable 6D-21 (Non-Functional) 2 3 5
  • Immunoglobulin Kappa Variable 6D-21 2
  • IGKV6D21 3
  • A10 3

External Ids for IGKV6D-21 Gene

Previous GeneCards Identifiers for IGKV6D-21 Gene

  • GC02U990148
  • GC02P089801
  • GC02P089818
  • GC02P089755
  • GC02P089698
  • GC02P090061
  • GC02P090064
  • GC02P090023
  • GC02P090075
  • GC02P090125
  • GC02P090138
  • GC02P090170
  • GC02P090187

Summaries for IGKV6D-21 Gene

GeneCards Summary for IGKV6D-21 Gene

IGKV6D-21 (Immunoglobulin Kappa Variable 6D-21 (Non-Functional)) is a Protein Coding gene. An important paralog of this gene is IGKV6-21.

UniProtKB/Swiss-Prot for IGKV6D-21 Gene

  • V region of the variable domain of immunoglobulin light chains that participates in the antigen recognition (PubMed:24600447). Immunoglobulins, also known as antibodies, are membrane-bound or secreted glycoproteins produced by B lymphocytes. In the recognition phase of humoral immunity, the membrane-bound immunoglobulins serve as receptors which, upon binding of a specific antigen, trigger the clonal expansion and differentiation of B lymphocytes into immunoglobulins-secreting plasma cells. Secreted immunoglobulins mediate the effector phase of humoral immunity, which results in the elimination of bound antigens (PubMed:20176268, PubMed:22158414). The antigen binding site is formed by the variable domain of one heavy chain, together with that of its associated light chain. Thus, each immunoglobulin has two antigen binding sites with remarkable affinity for a particular antigen. The variable domains are assembled by a process called V-(D)-J rearrangement and can then be subjected to somatic hypermutations which, after exposure to antigen and selection, allow affinity maturation for a particular antigen (PubMed:20176268, PubMed:17576170).

Additional gene information for IGKV6D-21 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGKV6D-21 Gene

Genomics for IGKV6D-21 Gene

Genomic Location for IGKV6D-21 Gene

Chromosome:
2
Start:
90,021,567 bp from pter
End:
90,022,185 bp from pter
Size:
619 bases
Orientation:
Plus strand

Genomic View for IGKV6D-21 Gene

Genes around IGKV6D-21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGKV6D-21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGKV6D-21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGKV6D-21 Gene

No data available for Regulatory Elements for IGKV6D-21 Gene

Proteins for IGKV6D-21 Gene

  • Protein details for IGKV6D-21 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A0A0MT36-KVD21_HUMAN
    Recommended name:
    Immunoglobulin kappa variable 6D-21
    Protein Accession:
    A0A0A0MT36

    Protein attributes for IGKV6D-21 Gene

    Size:
    114 amino acids
    Molecular mass:
    12340 Da
    Quaternary structure:
    • Immunoglobulins are composed of two identical heavy chains and two identical light chains; disulfide-linked.

neXtProt entry for IGKV6D-21 Gene

Post-translational modifications for IGKV6D-21 Gene

No Post-translational modifications

Other Protein References for IGKV6D-21 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for IGKV6D-21 Gene

Domains & Families for IGKV6D-21 Gene

Gene Families for IGKV6D-21 Gene

Protein Domains for IGKV6D-21 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IGKV6D-21: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGKV6D-21 Gene

Function for IGKV6D-21 Gene

Molecular function for IGKV6D-21 Gene

UniProtKB/Swiss-Prot Function:
V region of the variable domain of immunoglobulin light chains that participates in the antigen recognition (PubMed:24600447). Immunoglobulins, also known as antibodies, are membrane-bound or secreted glycoproteins produced by B lymphocytes. In the recognition phase of humoral immunity, the membrane-bound immunoglobulins serve as receptors which, upon binding of a specific antigen, trigger the clonal expansion and differentiation of B lymphocytes into immunoglobulins-secreting plasma cells. Secreted immunoglobulins mediate the effector phase of humoral immunity, which results in the elimination of bound antigens (PubMed:20176268, PubMed:22158414). The antigen binding site is formed by the variable domain of one heavy chain, together with that of its associated light chain. Thus, each immunoglobulin has two antigen binding sites with remarkable affinity for a particular antigen. The variable domains are assembled by a process called V-(D)-J rearrangement and can then be subjected to somatic hypermutations which, after exposure to antigen and selection, allow affinity maturation for a particular antigen (PubMed:20176268, PubMed:17576170).

Gene Ontology (GO) - Molecular Function for IGKV6D-21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003823 antigen binding IEA --
genes like me logo Genes that share ontologies with IGKV6D-21: view

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for IGKV6D-21
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGKV6D-21 Gene

Localization for IGKV6D-21 Gene

Subcellular locations from UniProtKB/Swiss-Prot for IGKV6D-21 Gene

Secreted. Cell membrane.

Gene Ontology (GO) - Cellular Components for IGKV6D-21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005615 extracellular space IBA --
GO:0005886 plasma membrane IEA --
GO:0016020 membrane IEA --
genes like me logo Genes that share ontologies with IGKV6D-21: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for IGKV6D-21 Gene

Pathways & Interactions for IGKV6D-21 Gene

SuperPathways for IGKV6D-21 Gene

No Data Available

Interacting Proteins for IGKV6D-21 Gene

Gene Ontology (GO) - Biological Process for IGKV6D-21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002250 adaptive immune response IEA --
GO:0002376 immune system process IEA --
GO:0002377 immunoglobulin production IBA --
GO:0006955 immune response IBA --
genes like me logo Genes that share ontologies with IGKV6D-21: view

No data available for Pathways by source and SIGNOR curated interactions for IGKV6D-21 Gene

Drugs & Compounds for IGKV6D-21 Gene

No Compound Related Data Available

Transcripts for IGKV6D-21 Gene

mRNA/cDNA for IGKV6D-21 Gene

(7) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for IGKV6D-21
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for IGKV6D-21 Gene

No ASD Table

Relevant External Links for IGKV6D-21 Gene

GeneLoc Exon Structure for
IGKV6D-21
ECgene alternative splicing isoforms for
IGKV6D-21

Expression for IGKV6D-21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IGKV6D-21 Gene

mRNA differential expression in normal tissues according to GTEx for IGKV6D-21 Gene

This gene is overexpressed in Spleen (x22.9), Colon - Transverse (x8.2), and Minor Salivary Gland (x6.5).

Protein differential expression in normal tissues from HIPED for IGKV6D-21 Gene

This gene is overexpressed in Urine (48.5) and Skin (20.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for IGKV6D-21 Gene



Protein tissue co-expression partners for IGKV6D-21 Gene

- Elite partner
genes like me logo Genes that share expression patterns with IGKV6D-21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGKV6D-21 Gene

Orthologs for IGKV6D-21 Gene

This gene was present in the common ancestor of chordates.

Orthologs for IGKV6D-21 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 84 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 55 (a)
ManyToMany
-- 34
  • 55 (a)
ManyToMany
-- 34
  • 50 (a)
ManyToMany
-- 34
  • 49 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 34
  • 51 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia -- 34
  • 47 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 40 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii CU570684.3 34
  • 40 (a)
ManyToMany
CU570684.2 34
  • 38 (a)
ManyToMany
CU570684.1 34
  • 35 (a)
ManyToMany
Species where no ortholog for IGKV6D-21 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for IGKV6D-21 Gene

ENSEMBL:
Gene Tree for IGKV6D-21 (if available)
TreeFam:
Gene Tree for IGKV6D-21 (if available)

Paralogs for IGKV6D-21 Gene

Paralogs for IGKV6D-21 Gene

genes like me logo Genes that share paralogs with IGKV6D-21: view

Variants for IGKV6D-21 Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for IGKV6D-21 Gene

KVD21_HUMAN-A0A0A0MT36
There are several alleles. The sequence shown is that of IMGT allele IGKV6D-21*02.

Relevant External Links for IGKV6D-21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGKV6D-21

No data available for Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IGKV6D-21 Gene

Disorders for IGKV6D-21 Gene

No disorders were found for IGKV6D-21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for IGKV6D-21 Gene

Publications for IGKV6D-21 Gene

  1. Immunoglobulin and T Cell Receptor Genes: IMGT(®) and the Birth and Rise of Immunoinformatics. (PMID: 24600447) Lefranc MP (Frontiers in immunology 2014) 4 60
  2. Molecular programming of B cell memory. (PMID: 22158414) McHeyzer-Williams M … McHeyzer-Williams L (Nature reviews. Immunology 2011) 4 60
  3. Structure and function of immunoglobulins. (PMID: 20176268) Schroeder HW … Cavacini L (The Journal of allergy and clinical immunology 2010) 4 60
  4. Immunoglobulin somatic hypermutation. (PMID: 17576170) Teng G … Papavasiliou FN (Annual review of genetics 2007) 4 60
  5. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 4 60

Products for IGKV6D-21 Gene

Sources for IGKV6D-21 Gene

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