Free for academic non-profit institutions. Other users need a Commercial license

Aliases for IGKV1OR2-108 Gene

Aliases for IGKV1OR2-108 Gene

  • Immunoglobulin Kappa Variable 1/OR2-108 (Non-Functional) 2 3 5
  • Immunoglobulin Orphon (Transposed Element) 1 2 3
  • Immunoglobulin Kappa Variable 1/OR2-108 2
  • IGKV1/OR2-108 3
  • IGKV1OR2108 3
  • IGO1 3

External Ids for IGKV1OR2-108 Gene

Previous GeneCards Identifiers for IGKV1OR2-108 Gene

  • GC02U990146
  • GC02P114166

Summaries for IGKV1OR2-108 Gene

GeneCards Summary for IGKV1OR2-108 Gene

IGKV1OR2-108 (Immunoglobulin Kappa Variable 1/OR2-108 (Non-Functional)) is a Protein Coding gene. An important paralog of this gene is IGKV1-39.

Additional gene information for IGKV1OR2-108 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGKV1OR2-108 Gene

Genomics for IGKV1OR2-108 Gene

Regulatory Elements for IGKV1OR2-108 Gene

Enhancers for IGKV1OR2-108 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H113389 1.2 Ensembl ENCODE 0.4 -15.8 -15768 1 FOXA2 ATF1 ARNT ARID4B ZNF2 ZNF143 ZNF207 ATF7 JUNB REST PAX8-AS1 PAX8 RNU6-1180P PGM5P4-AS1 CBWD2 FOXD4L1 IGKV1OR2-108 GC02P113352
GH02H113406 0.6 Ensembl 0.7 +0.0 5 0 ZFP69B MAZ KLF1 POLR2A ZNF692 ZNF10 ZIC2 IGKV1OR2-108 ENSG00000272563
GH02H113376 1.3 FANTOM5 Ensembl ENCODE 0.3 -29.4 -29413 1 PKNOX1 ZNF687 JUNB ELF1 DPF2 IKZF1 ATF7 ETV6 MLLT1 IKZF2 IL1RN IL36B PAX8 PAX8-AS1 PSD4 RNU6-1180P CBWD2 IL36G GC02P113352 IGKV1OR2-108
GH02H113430 0.9 Ensembl ENCODE 0.3 +25.7 25705 2 CAVIN1 HINFP ZNF740 NR4A1 TEAD2 ELF1 PTTG1 PYGO2 GTF2A2 ZNF592 FOXD4L1 ENSG00000272563 IGKV1OR2-108
GH02H113386 0.6 FANTOM5 Ensembl 0.4 -19.3 -19317 0 IL1RN IL36B PAX8-AS1 RNU6-1180P FOXD4L1 IL36G CBWD2 IL36RN IGKV1OR2-108 GC02P113352
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IGKV1OR2-108 on UCSC Golden Path with GeneCards custom track

Genomic Location for IGKV1OR2-108 Gene

Chromosome:
2
Start:
113,406,396 bp from pter
End:
113,406,872 bp from pter
Size:
477 bases
Orientation:
Plus strand

Genomic View for IGKV1OR2-108 Gene

Genes around IGKV1OR2-108 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGKV1OR2-108 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGKV1OR2-108 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for IGKV1OR2-108 Gene

Proteins for IGKV1OR2-108 Gene

  • Protein details for IGKV1OR2-108 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A075B7D4
    Recommended name:
    Immunoglobulin kappa variable 1/OR2-108 (non-functional)
    Protein Accession:
    A0A075B7D4

    Protein attributes for IGKV1OR2-108 Gene

    Size:
    117 amino acids
    Molecular mass:
    12535 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IGKV1OR2-108 Gene

Post-translational modifications for IGKV1OR2-108 Gene

No Post-translational modifications

Other Protein References for IGKV1OR2-108 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for IGKV1OR2-108 Gene

Domains & Families for IGKV1OR2-108 Gene

Gene Families for IGKV1OR2-108 Gene

Protein Domains for IGKV1OR2-108 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IGKV1OR2-108: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGKV1OR2-108 Gene

Function for IGKV1OR2-108 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for IGKV1OR2-108
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGKV1OR2-108 Gene

Localization for IGKV1OR2-108 Gene

Gene Ontology (GO) - Cellular Components for IGKV1OR2-108 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IBA --
genes like me logo Genes that share ontologies with IGKV1OR2-108: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for IGKV1OR2-108 Gene

Pathways & Interactions for IGKV1OR2-108 Gene

SuperPathways for IGKV1OR2-108 Gene

No Data Available

Interacting Proteins for IGKV1OR2-108 Gene

Gene Ontology (GO) - Biological Process for IGKV1OR2-108 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006955 immune response IBA --
genes like me logo Genes that share ontologies with IGKV1OR2-108: view

No data available for Pathways by source and SIGNOR curated interactions for IGKV1OR2-108 Gene

Drugs & Compounds for IGKV1OR2-108 Gene

No Compound Related Data Available

Transcripts for IGKV1OR2-108 Gene

mRNA/cDNA for IGKV1OR2-108 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for IGKV1OR2-108
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for IGKV1OR2-108 Gene

No ASD Table

Relevant External Links for IGKV1OR2-108 Gene

GeneLoc Exon Structure for
IGKV1OR2-108
ECgene alternative splicing isoforms for
IGKV1OR2-108

Expression for IGKV1OR2-108 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IGKV1OR2-108 Gene

mRNA differential expression in normal tissues according to GTEx for IGKV1OR2-108 Gene

This gene is overexpressed in Thyroid (x8.3), Skin - Not Sun Exposed (Suprapubic) (x6.4), Spleen (x4.9), and Adrenal Gland (x4.7).
genes like me logo Genes that share expression patterns with IGKV1OR2-108: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGKV1OR2-108 Gene

Orthologs for IGKV1OR2-108 Gene

This gene was present in the common ancestor of mammals.

Orthologs for IGKV1OR2-108 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 34
  • 58 (a)
OneToMany
Species where no ortholog for IGKV1OR2-108 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IGKV1OR2-108 Gene

ENSEMBL:
Gene Tree for IGKV1OR2-108 (if available)
TreeFam:
Gene Tree for IGKV1OR2-108 (if available)

Paralogs for IGKV1OR2-108 Gene

Pseudogenes.org Pseudogenes for IGKV1OR2-108 Gene

genes like me logo Genes that share paralogs with IGKV1OR2-108: view

Variants for IGKV1OR2-108 Gene

Relevant External Links for IGKV1OR2-108 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGKV1OR2-108

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IGKV1OR2-108 Gene

Disorders for IGKV1OR2-108 Gene

No disorders were found for IGKV1OR2-108 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for IGKV1OR2-108 Gene

Publications for IGKV1OR2-108 Gene

  1. A human immunoglobulin kappa orphon without sequence defects may be the product of a pericentric inversion. (PMID: 2114012) Huber C … Zachau HG (Nucleic acids research 1990) 2 3 60
  2. Characterization of an in vivo reactivation model of herpes simplex virus from mice trigeminal ganglia. (PMID: 8245867) Birmanns B … Steiner I (The Journal of general virology 1993) 22 60

Products for IGKV1OR2-108 Gene

Sources for IGKV1OR2-108 Gene

Content
Loading form....