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Aliases for IGKV1D-17 Gene

Aliases for IGKV1D-17 Gene

  • Immunoglobulin Kappa Variable 1D-17 2 3
  • IGKV1D17 3
  • L14 3

External Ids for IGKV1D-17 Gene

Previous GeneCards Identifiers for IGKV1D-17 Gene

  • GC02U990178
  • GC02P089863
  • GC02P089879
  • GC02P089817
  • GC02P089759
  • GC02P090122

Summaries for IGKV1D-17 Gene

GeneCards Summary for IGKV1D-17 Gene

IGKV1D-17 (Immunoglobulin Kappa Variable 1D-17) is a Protein Coding gene. An important paralog of this gene is IGKV3D-15.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGKV1D-17 Gene

Genomics for IGKV1D-17 Gene

Genomic Location for IGKV1D-17 Gene

Start:
90,082,635 bp from pter
End:
90,083,291 bp from pter
Size:
657 bases
Orientation:
Plus strand

Genomic View for IGKV1D-17 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for IGKV1D-17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGKV1D-17 Gene

No data available for Regulatory Elements for IGKV1D-17 Gene

Proteins for IGKV1D-17 Gene

  • Protein details for IGKV1D-17 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A075B6S4
    Recommended name:
    Protein IGKV1D-17
    Protein Accession:
    A0A075B6S4
    Secondary Accessions:

    Protein attributes for IGKV1D-17 Gene

    Size:
    117 amino acids
    Molecular mass:
    12835 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IGKV1D-17 Gene

Proteomics data for IGKV1D-17 Gene at MOPED

Post-translational modifications for IGKV1D-17 Gene

No Post-translational modifications

Other Protein References for IGKV1D-17 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for IGKV1D-17 Gene

Domains for IGKV1D-17 Gene

Gene Families for IGKV1D-17 Gene

HGNC:
  • IGK :Immunoglobulins / IGK locus

Protein Domains for IGKV1D-17 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IGKV1D-17: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGKV1D-17 Gene

Function for IGKV1D-17 Gene

Gene Ontology (GO) - Molecular Function for IGKV1D-17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with IGKV1D-17: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for IGKV1D-17 Gene

Localization for IGKV1D-17 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for IGKV1D-17 Gene COMPARTMENTS Subcellular localization image for IGKV1D-17 gene
Compartment Confidence
extracellular 3
cytosol 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for IGKV1D-17 Gene

Pathways for IGKV1D-17 Gene

SuperPathways for IGKV1D-17 Gene

No Data Available

Interacting Proteins for IGKV1D-17 Gene

Gene Ontology (GO) - Biological Process for IGKV1D-17 Gene

None

No data available for Pathways by source for IGKV1D-17 Gene

Transcripts for IGKV1D-17 Gene

mRNA/cDNA for IGKV1D-17 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IGKV1D-17 Gene

No ASD Table

Relevant External Links for IGKV1D-17 Gene

GeneLoc Exon Structure for
IGKV1D-17
ECgene alternative splicing isoforms for
IGKV1D-17

Expression for IGKV1D-17 Gene

mRNA expression in normal human tissues for IGKV1D-17 Gene

mRNA differential expression in normal tissues according to GTEx for IGKV1D-17 Gene

This gene is overexpressed in Spleen (11.2).

Protein differential expression in normal tissues for IGKV1D-17 Gene

This gene is overexpressed in Skin (69.0).

Integrated Proteomics: protein expression from for IGKV1D-17 Gene

genes like me logo Genes that share expressions with IGKV1D-17: view

Expression partners for IGKV1D-17 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for IGKV1D-17 Gene

Orthologs for IGKV1D-17 Gene

This gene was present in the common ancestor of mammals.

Orthologs for IGKV1D-17 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 36
  • 53 (a)
OneToMany
Species with no ortholog for IGKV1D-17:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IGKV1D-17 Gene

ENSEMBL:
Gene Tree for IGKV1D-17 (if available)
TreeFam:
Gene Tree for IGKV1D-17 (if available)

Paralogs for IGKV1D-17 Gene

genes like me logo Genes that share paralogs with IGKV1D-17: view

Variants for IGKV1D-17 Gene

Relevant External Links for IGKV1D-17 Gene

HapMap Linkage Disequilibrium report
IGKV1D-17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for IGKV1D-17 Gene

Disorders for IGKV1D-17 Gene

No disorders were found for IGKV1D-17 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for IGKV1D-17 Gene

Publications for IGKV1D-17 Gene

  1. The human immunoglobulin kappa locus. Characterization of the duplicated A regions. (PMID: 1551402) Lautner-Rieske A. … Zachau H.G. (Eur. J. Immunol. 1992) 3
  2. The human immunoglobulin kappa locus. Characterization of the partially duplicated L regions. (PMID: 8223862) Huber C. … Zachau H.G. (Eur. J. Immunol. 1993) 3
  3. The V kappa genes of the L regions and the repertoire of V kappa gene sequences in the human germ line. (PMID: 8223863) Huber C. … Zachau H.G. (Eur. J. Immunol. 1993) 3
  4. Evolutionary dynamics of the human immunoglobulin kappa locus and the germline repertoire of the Vkappa genes. (PMID: 11298326) Kawasaki K. … Shimizu N. (Eur. J. Immunol. 2001) 3

Products for IGKV1D-17 Gene

Sources for IGKV1D-17 Gene

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