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Aliases for IGHV3OR16-9 Gene

Aliases for IGHV3OR16-9 Gene

  • Immunoglobulin Heavy Variable 3/OR16-9 (Non-Functional) 2 3 5
  • Immunoglobulin Heavy Variable 3/OR16-9 2
  • IGHV3/OR16-9 3
  • IGHV3OR169 3

External Ids for IGHV3OR16-9 Gene

Previous GeneCards Identifiers for IGHV3OR16-9 Gene

  • GC16U990113

Summaries for IGHV3OR16-9 Gene

GeneCards Summary for IGHV3OR16-9 Gene

IGHV3OR16-9 (Immunoglobulin Heavy Variable 3/OR16-9 (Non-Functional)) is a Pseudogene. An important paralog of this gene is ENSG00000277836.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGHV3OR16-9 Gene

Genomics for IGHV3OR16-9 Gene

Regulatory Elements for IGHV3OR16-9 Gene

Enhancers for IGHV3OR16-9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F031116 1.5 FANTOM5 ENCODE 16.2 -947.7 -947653 3.9 HDGF PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 KAT8 ITGAX ENSG00000260304 ENSG00000260267 STX4 NDUFA3P6 ENSG00000261648 VN1R64P ENSG00000261475 VN1R65P
GH16F031083 1.4 Ensembl ENCODE 16.2 -979.9 -979924 5.2 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF720 ZNF747 ZNF785 NPIPB13 HSD3B7 ENSG00000260267 ZNF764 ENSG00000260911 NDUFA3P6 ENSG00000261648
GH16F031178 1.2 ENCODE 16.2 -885.2 -885232 4.7 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC MIR762HG ZNF785 ZNF720 PYCARD ZNF689 BCL7C ENSG00000260267 NDUFA3P6 PYDC1 ENSG00000261648
GH16F031093 1.2 ENCODE 16.2 -971.5 -971474 4.0 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 ZNF785 ZNF720 KAT8 NDUFA3P6 ENSG00000261648 VN1R64P ENSG00000261475 VN1R65P ENSG00000260568 LOC102725101
GH16F031071 1.2 ENCODE 16.2 -992.4 -992425 5.0 PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A YBX1 DMAP1 ZNF2 HSD3B7 KAT8 ZNF785 NDUFA3P6 ENSG00000261475 VN1R65P ENSG00000261648 VN1R64P ENSG00000260568 VN1R3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IGHV3OR16-9 on UCSC Golden Path with GeneCards custom track

Genomic Location for IGHV3OR16-9 Gene

Chromosome:
16
Start:
32,066,065 bp from pter
End:
32,066,358 bp from pter
Size:
294 bases
Orientation:
Plus strand

Genomic View for IGHV3OR16-9 Gene

Genes around IGHV3OR16-9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGHV3OR16-9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGHV3OR16-9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for IGHV3OR16-9 Gene

Proteins for IGHV3OR16-9 Gene

  • Protein details for IGHV3OR16-9 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0B4J2B5
    Recommended name:
    Protein IGHV3OR16-9
    Protein Accession:
    A0A0B4J2B5

    Protein attributes for IGHV3OR16-9 Gene

    Size:
    98 amino acids
    Molecular mass:
    10657 Da
    Quaternary structure:
    No Data Available
  • Protein details for IGHV3OR16-9 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    S4R460
    Recommended name:
    Protein IGHV3OR16-9
    Protein Accession:
    S4R460

    Protein attributes for IGHV3OR16-9 Gene

    Size:
    96 amino acids
    Molecular mass:
    10429 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IGHV3OR16-9 Gene

Post-translational modifications for IGHV3OR16-9 Gene

No Post-translational modifications

Other Protein References for IGHV3OR16-9 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for IGHV3OR16-9 Gene

Domains & Families for IGHV3OR16-9 Gene

Gene Families for IGHV3OR16-9 Gene

Protein Domains for IGHV3OR16-9 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IGHV3OR16-9: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGHV3OR16-9 Gene

Function for IGHV3OR16-9 Gene

Gene Ontology (GO) - Molecular Function for IGHV3OR16-9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0034987 immunoglobulin receptor binding IBA --
genes like me logo Genes that share ontologies with IGHV3OR16-9: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGHV3OR16-9 Gene

Localization for IGHV3OR16-9 Gene

Gene Ontology (GO) - Cellular Components for IGHV3OR16-9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0009897 external side of plasma membrane IBA --
GO:0042571 immunoglobulin complex, circulating IBA --
GO:0072562 blood microparticle IBA --
genes like me logo Genes that share ontologies with IGHV3OR16-9: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for IGHV3OR16-9 Gene

Pathways & Interactions for IGHV3OR16-9 Gene

SuperPathways for IGHV3OR16-9 Gene

No Data Available

Interacting Proteins for IGHV3OR16-9 Gene

Gene Ontology (GO) - Biological Process for IGHV3OR16-9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006910 phagocytosis, recognition IBA --
GO:0006911 phagocytosis, engulfment IBA --
GO:0006958 complement activation, classical pathway IBA --
GO:0042742 defense response to bacterium IBA --
GO:0045087 innate immune response IBA --
genes like me logo Genes that share ontologies with IGHV3OR16-9: view

No data available for Pathways by source and SIGNOR curated interactions for IGHV3OR16-9 Gene

Transcripts for IGHV3OR16-9 Gene

mRNA/cDNA for IGHV3OR16-9 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IGHV3OR16-9 Gene

No ASD Table

Relevant External Links for IGHV3OR16-9 Gene

GeneLoc Exon Structure for
IGHV3OR16-9
ECgene alternative splicing isoforms for
IGHV3OR16-9

Expression for IGHV3OR16-9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for IGHV3OR16-9 Gene

genes like me logo Genes that share expression patterns with IGHV3OR16-9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for IGHV3OR16-9 Gene

Orthologs for IGHV3OR16-9 Gene

This gene was present in the common ancestor of mammals.

Orthologs for IGHV3OR16-9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 75 (a)
OneToMany
-- 35
  • 74 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 35
  • 59 (a)
ManyToMany
Species where no ortholog for IGHV3OR16-9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IGHV3OR16-9 Gene

ENSEMBL:
Gene Tree for IGHV3OR16-9 (if available)
TreeFam:
Gene Tree for IGHV3OR16-9 (if available)

Paralogs for IGHV3OR16-9 Gene

Variants for IGHV3OR16-9 Gene

Relevant External Links for IGHV3OR16-9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGHV3OR16-9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IGHV3OR16-9 Gene

Disorders for IGHV3OR16-9 Gene

No disorders were found for IGHV3OR16-9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for IGHV3OR16-9 Gene

Publications for IGHV3OR16-9 Gene

  1. Human immunoglobulin VH and D segments on chromosomes 15q11.2 and 16p11.2. (PMID: 7951227) Tomlinson I.M. … Winter G. (Hum. Mol. Genet. 1994) 3 64

Products for IGHV3OR16-9 Gene

Sources for IGHV3OR16-9 Gene

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