Free for academic non-profit institutions. Other users need a Commercial license

Aliases for IGHV3-42 Gene

Subcategory (RNA class) for IGHV3-42 Gene

lncRNA

Aliases for IGHV3-42 Gene

  • Immunoglobulin Heavy Variable 3-42 (Pseudogene) 2 3 5
  • Immunoglobulin Heavy Variable 3-42 Pseudogene 2
  • Immunoglobulin Heavy Variable 3-42 2
  • IGHV342 3
  • 3-42P 3

External Ids for IGHV3-42 Gene

ORGUL Members for IGHV3-42 Gene

Previous GeneCards Identifiers for IGHV3-42 Gene

  • GC14U990183
  • GC14M104890
  • GC14M105990
  • GC14M106920
  • GC14M087049
  • GC14M106922
  • GC14M107313
  • GC14M107458
  • GC14M107650
  • GC14M106563
  • GC14M106678
  • GC14M107761
  • GC14M107854
  • GC14M107953
  • GC14M108075

Summaries for IGHV3-42 Gene

GeneCards Summary for IGHV3-42 Gene

IGHV3-42 (Immunoglobulin Heavy Variable 3-42 (Pseudogene)) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for IGHV3-42 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGHV3-42 Gene

Genomics for IGHV3-42 Gene

Regulatory Elements for IGHV3-42 Gene

Enhancers for IGHV3-42 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H105566 1.5 FANTOM5 ENCODE dbSUPER 14.6 +894.0 893962 6 HDGF ZNF133 YBX1 GLI4 ZNF48 ZNF2 ZBTB7B GLIS2 ZNF143 ZNF207 MTA1 ENSG00000257270 CDCA4 ENSG00000225200 IGHVIII-11-1 ENSG00000271201 IGHVII-33-1 HOMER2P2 HOMER2P1 IGHV3-42
GH14H105479 1.4 ENCODE dbSUPER 14.6 +977.7 977688 13 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC SSRP1 ZNF610 ZNF585B MTA1 ENSG00000257270 IGHVIII-11-1 IGHVII-33-1 HOMER2P1 IGHV3-42 HOMER2P2 ENSG00000271201 CDCA4 GPR132
GH14H105470 1.3 ENCODE dbSUPER 14.6 +989.4 989375 8 HDGF PKNOX1 ZFP64 ARID4B SIN3A ZNF2 ZBTB7B YY1 GLIS2 KLF7 MTA1 IGHVIII-11-1 HOMER2P2 IGHVII-33-1 HOMER2P1 IGHV3-42 ENSG00000271201 ENSG00000257270 BRF1 CLBA1
GH14H106465 0.6 dbSUPER 0.4 -5.8 -5786 7 CTCF ZNF316 SMC3 FOS EMSY RAD21 MAFK IGHV4-39 IGHV3-43 IGHV3-64 IGHV3-66 IGHV4-59 IGHV3-42
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IGHV3-42 on UCSC Golden Path with GeneCards custom track

Genomic Location for IGHV3-42 Gene

Chromosome:
14
Start:
106,463,254 bp from pter
End:
106,463,691 bp from pter
Size:
438 bases
Orientation:
Minus strand

Genomic View for IGHV3-42 Gene

Genes around IGHV3-42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGHV3-42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGHV3-42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGHV3-42 Gene

Proteins for IGHV3-42 Gene

Post-translational modifications for IGHV3-42 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IGHV3-42 Gene

Domains & Families for IGHV3-42 Gene

Gene Families for IGHV3-42 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IGHV3-42: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGHV3-42 Gene

Function for IGHV3-42 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for IGHV3-42
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGHV3-42 Gene

Localization for IGHV3-42 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IGHV3-42 Gene

Pathways & Interactions for IGHV3-42 Gene

SuperPathways for IGHV3-42 Gene

No Data Available

Interacting Proteins for IGHV3-42 Gene

Gene Ontology (GO) - Biological Process for IGHV3-42 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IGHV3-42 Gene

Drugs & Compounds for IGHV3-42 Gene

No Compound Related Data Available

Transcripts for IGHV3-42 Gene

mRNA/cDNA for IGHV3-42 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for IGHV3-42
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for IGHV3-42 Gene

No ASD Table

Relevant External Links for IGHV3-42 Gene

GeneLoc Exon Structure for
IGHV3-42
ECgene alternative splicing isoforms for
IGHV3-42

Expression for IGHV3-42 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IGHV3-42 Gene

genes like me logo Genes that share expression patterns with IGHV3-42: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGHV3-42 Gene

Orthologs for IGHV3-42 Gene

Evolution for IGHV3-42 Gene

ENSEMBL:
Gene Tree for IGHV3-42 (if available)
TreeFam:
Gene Tree for IGHV3-42 (if available)

No data available for Orthologs for IGHV3-42 Gene

Paralogs for IGHV3-42 Gene

No data available for Paralogs for IGHV3-42 Gene

Variants for IGHV3-42 Gene

Relevant External Links for IGHV3-42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGHV3-42

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IGHV3-42 Gene

Disorders for IGHV3-42 Gene

No disorders were found for IGHV3-42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for IGHV3-42 Gene

Publications for IGHV3-42 Gene

  1. Structure and physical map of 64 variable segments in the 3'0.8-megabase region of the human immunoglobulin heavy-chain locus. (PMID: 8490662) Matsuda F … Anand R (Nature genetics 1993) 3 60

Products for IGHV3-42 Gene

Sources for IGHV3-42 Gene

Content
Loading form....