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Aliases for IGHV1OR21-1 Gene

Aliases for IGHV1OR21-1 Gene

  • Immunoglobulin Heavy Variable 1/OR21-1 (Non-Functional) 2 3 5
  • Immunoglobulin Heavy Variable 1/OR21-1 Pseudogene 2 3
  • IGHV1/OR21-1 3

External Ids for IGHV1OR21-1 Gene

Previous GeneCards Identifiers for IGHV1OR21-1 Gene

  • GC21P010862

Summaries for IGHV1OR21-1 Gene

GeneCards Summary for IGHV1OR21-1 Gene

IGHV1OR21-1 (Immunoglobulin Heavy Variable 1/OR21-1 (Non-Functional)) is a Pseudogene. An important paralog of this gene is IGHV1OR15-9.

Additional gene information for IGHV1OR21-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGHV1OR21-1 Gene

Genomics for IGHV1OR21-1 Gene

GeneHancer (GH) Regulatory Elements for IGHV1OR21-1 Gene

Promoters and enhancers for IGHV1OR21-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I010660 Enhancer 0.2 FANTOM5 0.4 -10.4 -10371 0.3 IGHV1OR21-1
GH21I010700 Enhancer 0.2 ENCODE 0.2 -51.0 -51017 0.1 IGHV1OR21-1
GH21I010718 Enhancer 0.2 ENCODE 0.2 -69.1 -69075 0.5 IGHV1OR21-1
GH21I010722 Enhancer 0.2 ENCODE 0.2 -73.1 -73125 0.1 IGHV1OR21-1
GH21I010723 Enhancer 0.2 ENCODE 0.2 -73.9 -73867 0.2 IGHV1OR21-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IGHV1OR21-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IGHV1OR21-1 Gene

Genomic Locations for IGHV1OR21-1 Gene
chr21:10,649,390-10,649,835
(GRCh38/hg38)
Size:
446 bases
Orientation:
Minus strand
chr21:10,862,622-10,863,067
(GRCh37/hg19)

Genomic View for IGHV1OR21-1 Gene

Genes around IGHV1OR21-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGHV1OR21-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGHV1OR21-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGHV1OR21-1 Gene

Proteins for IGHV1OR21-1 Gene

  • Protein details for IGHV1OR21-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WYE8
    Recommended name:
    Immunoglobulin heavy variable 1/OR21-1 (non-functional)
    Protein Accession:
    A0A087WYE8

    Protein attributes for IGHV1OR21-1 Gene

    Size:
    117 amino acids
    Molecular mass:
    13023 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IGHV1OR21-1 Gene

Post-translational modifications for IGHV1OR21-1 Gene

No Post-translational modifications

Other Protein References for IGHV1OR21-1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for IGHV1OR21-1 Gene

Domains & Families for IGHV1OR21-1 Gene

Gene Families for IGHV1OR21-1 Gene

Protein Domains for IGHV1OR21-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IGHV1OR21-1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGHV1OR21-1 Gene

Function for IGHV1OR21-1 Gene

Phenotypes for IGHV1OR21-1 Gene

GenomeRNAi human phenotypes for IGHV1OR21-1:
genes like me logo Genes that share phenotypes with IGHV1OR21-1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGHV1OR21-1 Gene

Localization for IGHV1OR21-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IGHV1OR21-1 Gene

Pathways & Interactions for IGHV1OR21-1 Gene

SuperPathways for IGHV1OR21-1 Gene

No Data Available

Interacting Proteins for IGHV1OR21-1 Gene

Gene Ontology (GO) - Biological Process for IGHV1OR21-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IGHV1OR21-1 Gene

Drugs & Compounds for IGHV1OR21-1 Gene

No Compound Related Data Available

Transcripts for IGHV1OR21-1 Gene

mRNA/cDNA for IGHV1OR21-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for IGHV1OR21-1 Gene

No ASD Table

Relevant External Links for IGHV1OR21-1 Gene

GeneLoc Exon Structure for
IGHV1OR21-1
ECgene alternative splicing isoforms for
IGHV1OR21-1

Expression for IGHV1OR21-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IGHV1OR21-1 Gene

Protein differential expression in normal tissues from HIPED for IGHV1OR21-1 Gene

This gene is overexpressed in Cervix (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for IGHV1OR21-1 Gene



Protein tissue co-expression partners for IGHV1OR21-1 Gene

genes like me logo Genes that share expression patterns with IGHV1OR21-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGHV1OR21-1 Gene

Orthologs for IGHV1OR21-1 Gene

Evolution for IGHV1OR21-1 Gene

ENSEMBL:
Gene Tree for IGHV1OR21-1 (if available)
TreeFam:
Gene Tree for IGHV1OR21-1 (if available)

No data available for Orthologs for IGHV1OR21-1 Gene

Paralogs for IGHV1OR21-1 Gene

Variants for IGHV1OR21-1 Gene

Additional Variant Information for IGHV1OR21-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGHV1OR21-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IGHV1OR21-1 Gene

Disorders for IGHV1OR21-1 Gene

Additional Disease Information for IGHV1OR21-1

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for IGHV1OR21-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IGHV1OR21-1 Gene

Publications for IGHV1OR21-1 Gene

  1. Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection. (PMID: 21083371) Chinn LW … O'Brien SJ (The Journal of infectious diseases 2010) 44 58
  2. IgE transcripts in the circulation of allergic children reflect a classical antigen-driven B cell response and not a superantigen-like activation. (PMID: 20660349) Kerzel S … Zemlin M (Journal of immunology (Baltimore, Md. : 1950) 2010) 3 58
  3. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 58
  4. The repertoire of human germline VH sequences reveals about fifty groups of VH segments with different hypervariable loops. (PMID: 1404388) Tomlinson IM … Winter G (Journal of molecular biology 1992) 3 58
  5. A new human immunoglobulin VH family preferentially rearranged in immature B-cell tumours. (PMID: 3123998) Humphries CG … Tucker PW (Nature 1988) 3 58

Products for IGHV1OR21-1 Gene

Sources for IGHV1OR21-1 Gene

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