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Aliases for IGHV1OR15-1 Gene

Aliases for IGHV1OR15-1 Gene

  • Immunoglobulin Heavy Variable 1/OR15-1 (Non-Functional) 2 3 5
  • Immunoglobulin Heavy Variable 1/OR15-1 Pseudogene 2 3
  • Immunoglobulin Heavy Variable 1/OR15-1 (Pseudogene) 2
  • Immunoglobulin Heavy Variable 1/OR15-1 2
  • IGHV1/OR15-1 3
  • IGHV1OR151 3

External Ids for IGHV1OR15-1 Gene

Previous GeneCards Identifiers for IGHV1OR15-1 Gene

  • GC15U990092
  • GC15M019951
  • GC15M022448

Summaries for IGHV1OR15-1 Gene

GeneCards Summary for IGHV1OR15-1 Gene

IGHV1OR15-1 (Immunoglobulin Heavy Variable 1/OR15-1 (Non-Functional)) is a Pseudogene. GO annotations related to this gene include antigen binding. An important paralog of this gene is LOC102724760.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGHV1OR15-1 Gene

Genomics for IGHV1OR15-1 Gene

Regulatory Elements for IGHV1OR15-1 Gene

Enhancers for IGHV1OR15-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F022157 1.4 FANTOM5 Ensembl ENCODE 0.8 -0.2 -214 6.7 CTCF PKNOX1 ASH2L EBF1 POLR2A EGR1 EED ZNF143 FOS MTA2 OR4N4 IGHV1OR15-1 GC15M022187
GH15F022167 0.8 FANTOM5 ENCODE 0.4 -6.9 -6851 1.2 IGHV1OR15-1 GC15M022187
GH15F022154 0.8 Ensembl ENCODE 0.4 +5.3 5259 2.3 HDAC1 LEF1 ESRRA TAL1 ZNF316 NCOR1 NFE2 TRIM24 SMARCE1 MTA2 RPS8P10 IGHV1OR15-1
GH15F022165 0.4 ENCODE 0.4 -5.0 -5041 0.8 IGHV1OR15-1 GC15M022187
GH15F022172 0.5 Ensembl 0.4 -11.4 -11367 0.2 ZNF512 ZBTB40 IGHV1OR15-1 GC15M022187
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around IGHV1OR15-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for IGHV1OR15-1 Gene

Chromosome:
15
Start:
22,160,288 bp from pter
End:
22,160,934 bp from pter
Size:
647 bases
Orientation:
Minus strand

Genomic View for IGHV1OR15-1 Gene

Genes around IGHV1OR15-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGHV1OR15-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGHV1OR15-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGHV1OR15-1 Gene

Proteins for IGHV1OR15-1 Gene

  • Protein details for IGHV1OR15-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A075B7D0
    Recommended name:
    Protein IGHV1OR15-1
    Protein Accession:
    A0A075B7D0

    Protein attributes for IGHV1OR15-1 Gene

    Size:
    117 amino acids
    Molecular mass:
    13012 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IGHV1OR15-1 Gene

Post-translational modifications for IGHV1OR15-1 Gene

No Post-translational modifications

Other Protein References for IGHV1OR15-1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for IGHV1OR15-1 Gene

Domains & Families for IGHV1OR15-1 Gene

Gene Families for IGHV1OR15-1 Gene

Protein Domains for IGHV1OR15-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IGHV1OR15-1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGHV1OR15-1 Gene

Function for IGHV1OR15-1 Gene

Gene Ontology (GO) - Molecular Function for IGHV1OR15-1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003823 antigen binding NAS 2841108
genes like me logo Genes that share ontologies with IGHV1OR15-1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGHV1OR15-1 Gene

Localization for IGHV1OR15-1 Gene

Gene Ontology (GO) - Cellular Components for IGHV1OR15-1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region NAS 2841108
GO:0005886 plasma membrane IEA --
genes like me logo Genes that share ontologies with IGHV1OR15-1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for IGHV1OR15-1 Gene

Pathways & Interactions for IGHV1OR15-1 Gene

SuperPathways for IGHV1OR15-1 Gene

No Data Available

Interacting Proteins for IGHV1OR15-1 Gene

Gene Ontology (GO) - Biological Process for IGHV1OR15-1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002250 adaptive immune response IEA --
GO:0006955 immune response NAS 2841108
genes like me logo Genes that share ontologies with IGHV1OR15-1: view

No data available for Pathways by source and SIGNOR curated interactions for IGHV1OR15-1 Gene

Transcripts for IGHV1OR15-1 Gene

mRNA/cDNA for IGHV1OR15-1 Gene

(8) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IGHV1OR15-1 Gene

No ASD Table

Relevant External Links for IGHV1OR15-1 Gene

GeneLoc Exon Structure for
IGHV1OR15-1
ECgene alternative splicing isoforms for
IGHV1OR15-1

Expression for IGHV1OR15-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for IGHV1OR15-1 Gene

mRNA differential expression in normal tissues according to GTEx for IGHV1OR15-1 Gene

This gene is overexpressed in Spleen (x9.1) and Small Intestine - Terminal Ileum (x4.6).
genes like me logo Genes that share expression patterns with IGHV1OR15-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for IGHV1OR15-1 Gene

Orthologs for IGHV1OR15-1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for IGHV1OR15-1 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 35 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 28 (a)
ManyToMany
chicken
(Gallus gallus)
Aves -- 35
  • 31 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 52 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ighv9-2 35
  • 35 (a)
ManyToMany
Species where no ortholog for IGHV1OR15-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for IGHV1OR15-1 Gene

ENSEMBL:
Gene Tree for IGHV1OR15-1 (if available)
TreeFam:
Gene Tree for IGHV1OR15-1 (if available)

Paralogs for IGHV1OR15-1 Gene

Variants for IGHV1OR15-1 Gene

Sequence variations from dbSNP and Humsavar for IGHV1OR15-1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs111347411 -- 22,162,612(+) CAAGT(C/T)CACAC nc-transcript-variant, upstream-variant-2KB
rs111408886 -- 22,161,855(+) CTCTG(C/G)GGGGG upstream-variant-2KB
rs111963190 -- 22,161,344(+) AGATA(C/T)CTGAA upstream-variant-2KB
rs112325308 -- 22,160,625(+) CAGTG(C/G/T)ATATA nc-transcript-variant, upstream-variant-2KB
rs11259863 -- 22,161,883(+) TCTCA(A/T)TTTGG upstream-variant-2KB

Relevant External Links for IGHV1OR15-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGHV1OR15-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IGHV1OR15-1 Gene

Disorders for IGHV1OR15-1 Gene

Relevant External Links for IGHV1OR15-1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IGHV1OR15-1

No disorders were found for IGHV1OR15-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IGHV1OR15-1 Gene

Publications for IGHV1OR15-1 Gene

  1. Human immunoglobulin VH and D segments on chromosomes 15q11.2 and 16p11.2. (PMID: 7951227) Tomlinson I.M. … Winter G. (Hum. Mol. Genet. 1994) 3 64
  2. Nucleotidic sequence analysis of the variable domains of four human monoclonal IgM with an antibody activity to myelin-associated glycoprotein. (PMID: 7681398) Mariette X. … Brouet J.C. (Eur. J. Immunol. 1993) 3 64
  3. Dispersed localization of D segments in the human immunoglobulin heavy-chain locus. (PMID: 2841108) Matsuda F. … Honjo T. (EMBO J. 1988) 3 64
  4. Cloning and sequence determination of the gene for the human immunoglobulin epsilon chain expressed in a myeloma cell line. (PMID: 6815656) Kenten J.H. … Gould H.J. (Proc. Natl. Acad. Sci. U.S.A. 1982) 3 64

Products for IGHV1OR15-1 Gene

Sources for IGHV1OR15-1 Gene

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