IGHD3-9 Gene protein-coding GIFtS : 16 GCID: GC14 M107584
Immunoglobulin Heavy Diversity 3-9
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Aliasesfor IGHD3-9 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
10 fRNAdb ,
12 H-InvDB ,
13 NCBI ,
14 NONCODE ,
and/or 15 RNAdb )About This Section
Aliases Immunoglobulin Heavy Diversity 3-9 1 2 DXP12 IGHD392
Export aliases for IGHD3-9 gene to outside databases Previous GC identifers: GC14U990255 GC14M104342 GC14M105442 GC14M105445 GC14M105454 GC14M105465 GC14M105474 GC14M105486 GC14M105496 GC14M105512 GC14M105528 GC14M105540 GC14M105554 GC14M106398 GC14M106449 GC14M106513 GC14M106716 GC14M107392
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Summariesfor IGHD3-9 gene (According to Entrez Gene ,
GeneCards ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section
GeneCards Summary for IGHD3-9 Gene: IGHD3-9 (immunoglobulin heavy diversity 3-9) is a protein-coding gene.
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Genomic Viewsfor IGHD3-9 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,miRBase ,UCSC (hg19) and
Ensembl (release 75) ,
Regulatory elements and Epigenetics data according to
QIAGEN , and/or
SwitchGear Genomics )About This Section
Regulatory elements: Search for regulatory transcription factor binding sites for IGHD3-9 Other transcription factors Search Chromatin IP Primers for IGHD3-9 Epigenetics: DNA Methylation CpG Assay Predesigned for Pyrosequencing in human mouse rat
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 14q32.33 Ensembl cytogenetic band: 14q32.33 HGNC cytogenetic band: 14q32.33 IGHD3-9 Gene in genomic location: bands according to Ensembl, locations according to
Entrez Gene Ensembl GeneLoc information about chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14M107584: view genomic region
(about GC identifiers )
Start: 106,370,539 bp from pter End:
106,370,569 bp from pter
Size: 31 bases Orientation:
minus strand
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Proteinsfor IGHD3-9 gene
(According to
1 UniProtKB ,
HORDE ,
2 neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to PhosphoSitePlus ,
Specific Peptides from DME ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec ,
Cloud-Clone Corp. ,
eBioscience ,
antibodies-online , and/or
GeneTex ,
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences ,
Cloud-Clone Corp. ,
eBioscience , and/or
antibodies-online ,
Antibodies by
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam ,
Cloud-Clone Corp ,
antibodies-online ,
and/or others.)
About This Section
UniProtKB: --ENSEMBL proteins: ENSP00000419583 IGHD3-9 Human Recombinant
Protein Products: IGHD3-9 Antibody
Products: IGHD3-9 Assay Products:
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Domains /for IGHD3-9 gene (According to HGNC , IUPHAR , InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GenesLikeMe )
About This Section
HGNC Gene Families: IGH: Immunoglobulins / IGH locus
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Functionfor IGHD3-9 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
genOway ,
QIAGEN
and/or HOMER ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
Gene Editing from DNA2.0 ,
Clones from OriGene ,
GenScript ,
Sino Biological ,
DNA2.0 ,
Vector BioLabs
and/or Addgene ,
Cell Lines from GenScript ,
ESI BIO ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Flow cytometry from eBioscience ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene ,
Sets of similar genes according to GenesLikeMe )
About This Section
Animal Models: Inhib. RNA Browse OriGene RNAi Predesigned siRNA for gene silencing in human mouse rat
Cell Line GenScript Custom overexpressing Cell Line Services for IGHD3-9 Browse ESI BIO Cell Lines and PureStem Progenitors for IGHD3-9 In Situ AssayAdvanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IGHD3-9
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Localizationfor IGHD3-9 gene
(According to UniProtKB , COMPARTMENTS Subcellular localization database ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene ,
Sets of similar genes according to GenesLikeMe )
About This Section
Subcellular locations from COMPARTMENTS : Compartment Confidence cytosol 1
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Pathways & Interactionsfor IGHD3-9 gene
(SuperPaths according to PathCards ,
Pathways according to
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Sino Biological ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GenesLikeMe ,
Interaction Networks according to
QIAGEN ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene ,
Sets of similar genes according to GenesLikeMe )
About This Section
Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for IGHD3-9 Interactions: Search GeneGlobe Interaction Network for IGHD3-9
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Drugs & Compoundsfor IGHD3-9 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience ,
ApexBio ,
HMDB ,
BitterDB , and/or
Novoseek ,
Ligands according to IUPHAR ,
and Drugs according to DrugBank ,
Enzo Life Sciences , and/or
PharmGKB ,
Sets of similar genes according to GenesLikeMe )
About This Section
Browse compounds at ApexBio Browse Tocris compounds for IGHD3-9
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Transcriptsfor IGHD3-9 gene (Secondary structures according to
fRNAdb ,Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank , Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC , GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
OriGene ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
and/or Addgene ,
Primers from
OriGene , and/or
QIAGEN ,
Flow cytometry from eBioscience
)About This Section
1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000390584 Inhib. RNA Browse OriGene RNAi Predesigned siRNA for gene silencing in human mouse rat
Selected AceView cDNA sequences (see all 413 ):
CR613511 CR603657 BM454441 CA426007 CR606782 BU617323 CR612969 BU632930 CR611468 CA425220 BE295500 BU616272 CR598316 CR606531 BQ710450 CA425337 AI690594 CR612985 BU726459 CR619687 CR607277 CR608814 CR626477 BF435693 GeneLoc Exon Structure
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Expression for IGHD3-9 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GenesLikeMe ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
Protein expression images according to data from SPIRE 1 MOPED ,
2 PaxDb , and 3 MaxQB ,
plus additional links to
SOURCE , and/or
BioGPS , and/or
UniProtKB ,QIAGEN ,
Primers from
OriGene , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section
See probesets specificity/sensitivity at GeneAnnot CGAP TAG: -- IGHD3-9 Protein expression data from MOPED1 2 3 : Custom PCR Arrays for IGHD3-9 Primer Browse OriGene qPCR Search Pre-validated RT2 qPCR
Primer Assays in human, mouse, rat IGHD3-9 QuantiTect SYBR Green Assays in human mouse rat QuantiFast Probe-based Assays in human mouse rat In Situ Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IGHD3-9
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Orthologsfor IGHD3-9 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
ENSEMBL Gene Tree for IGHD3-9 (if available)TreeFam Gene Tree for IGHD3-9 (if available)
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Paralogsfor IGHD3-9 gene (Paralogs according to
1 HomoloGene ,2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68,Sets of similar genes according to GenesLikeMe )About This Section
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Genomic Variantsfor IGHD3-9 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
4 UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) , the Human Cytochrome P450 Allele
Nomenclature Database , and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN )
About This Section
Site Specific Mutation Identification with PCR Assays
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Disorders
/ Diseasesfor IGHD3-9 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB ,
Sets of similar genes according to GenesLikeMe )
About This Section
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Publicationsfor IGHD3-9 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section
PubMed article for IGHD3-9 gene integrated from 10 sources :(articles sorted by number of sources associating them with IGHD3-9) Utopia : connect your pdf to the dynamic
Organization of human immunoglobulin heavy chain diversity gene loci. (PubMed id 3243276) 1 , 3(EMBO J. 1988)
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External Searches for IGHD3-9 gene (in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing IGHD3-9 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing IGHD3-9 gene
(According to HUGE )
About This Section --
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Specialized Databases showing IGHD3-9 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , UniProtKB/TrEMBL , and/or others, e.g. Wikipedia and GeneReviews , via UniProtKB/Swiss-Prot )About This Section
Name Description PharmGKB entry for IGHD3-9 Pharmacogenomics, SNPs, Pathways IMGT entry for IGHD3-9The international I mM unoG eneT ics information system® specializing in Immunoglobulins (IG), T cell receptors (TR), Major Histocompatibility Complex (MHC) and related proteins of the immune system (RPI) of human and other vertebrate species.
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About This Section Patent Information for IGHD3-9 gene: IGHD3-9 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor IGHD3-9 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Cloud-Clone Corp. , Thermo Fisher Scientific , eBioscience , antibodies-online , GeneTex , and/or others, Gene Editing from DNA2.0 . Clones from OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Addgene , Cell lines from GenScript , and ESI BIO , Flow cytometery from eBioscience , PCR Arrays from QIAGEN , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , Enzo Life Sciences , and/or
ApexBio , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from genOway )About This Section
Block miRNA regulation of human, mouse, rat IGHD3-9 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing IGHD3-9 DNA Methylation CpG Assay Predesigned for Pyrosequencing in human mouse rat Predesigned siRNA for gene silencing in human mouse rat QuantiFast Probe-based Assays in human mouse rat QuantiTect SYBR Green Assays in human mouse rat Custom PCR Arrays for IGHD3-9 Search Chromatin IP Primers for IGHD3-9 Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat IGHD3-9 Search GeneGlobe Interaction Network for IGHD3-9 Search Regulatory tfbs for IGHD3-9
Search Tocris compounds for IGHD3-9
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IGHD3-9
Search ThermoFisher Antibodies for IGHD3-9
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat IGHD3-9
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Aliases for IGHD3-9
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Intellectual Property for IGHD3-9
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