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IGH Gene

protein-coding   GIFtS: 21
GCID: GC14M106034

Immunoglobulin Heavy Locus


(Previous symbols: IGHDY1, IGH@)
  See IGH-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Immunoglobulin Heavy Locus1 2     Immunglobulin Heavy Chain Variable Region2
IGH@1 2     Immunoglobulin Heavy Diversity Cluster2
IGHDY11 2     Immunoglobulin Heavy Diversity Group2
IGD12     Immunoglobulin Heavy Diversity Locus2
IGH.1@2     Immunoglobulin Heavy Joining Cluster2
IGHD@2     Immunoglobulin Heavy Joining Group2
IGHJ2     Immunoglobulin Heavy Polypeptide, Joining Region2
IGHJ@2     Immunoglobulin Heavy Variable Cluster2
IGHV2     Immunoglobulin Heavy Variable Group2
IGHV@2     J (Joining) Region Of Heavy Chains2
D (Diversity) Region Of Heavy Chains2     

External Ids:    HGNC: 54771   Entrez Gene: 34922   OMIM: 146910,147010,1470705   

Export aliases for IGH gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for IGH Gene:
Immunoglobulins recognize foreign antigens and initiate immune responses such as phagocytosis and the complement
system. Each immunoglobulin molecule consists of two identical heavy chains and two identical light chains. This
region represents the germline organization of the heavy chain locus. The locus includes V (variable), D
(diversity), J (joining), and C (constant) segments. During B cell development, a recombination event at the DNA
level joins a single D segment with a J segment; this partially rearranged D-J gene is then joined to a V
segment. The rearranged V-D-J is then transcribed with the IGHM constant region; this transcript encodes a mu
heavy chain. Later in development B cells generate V-D-J-Cmu-Cdelta pre-messenger RNA, which is alternatively
spliced to encode either a mu or a delta heavy chain. Mature B cells in the lymph nodes undergo switch
recombination, so that the V-D-J gene is brought in proximity to one of the IGHG, IGHA, or IGHE genes and each
cell expresses either the gamma, alpha, or epsilon heavy chain. Recombination of many different V segments with
several J segments provides a wide range of antigen recognition. Additional diversity is attained by junctional
diversity, resulting from the random additional of nucleotides by terminal deoxynucleotidyltransferase, and by
somatic hypermutation, which occurs during B cell maturation in the spleen and lymph nodes. Due to polymorphism,
the numbers of functional V, J, and D genes differ among individuals and some V, D, J, and C segments may be
pseudogenes. (provided by RefSeq, Oct 2013)

GeneCards Summary for IGH Gene:
IGH (immunoglobulin heavy locus) is a protein-coding gene. Diseases associated with IGH include chromosome 13q deletion, and malt lymphoma.

Gene Wiki entry for IGH (IGH@) Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for IGH
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat IGH


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q32.33   HGNC cytogenetic band: 14q32.33

IGH Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
IGH gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14M106034:  view genomic region     (about GC identifiers)

Start:
106,032,614 bp from pter      End:
107,288,051 bp from pter
Size:
1,255,438 bases      Orientation:
minus strand
IGH has overlapping exons with:
IGHVII-44-2

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
IGH: Immunoglobulins / IGH locus

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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  --

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for IGH About   (see all 6)  
See pathways by source

SuperPathContained pathways About
1Immune response Fc epsilon RI pathway
Immune response Fc epsilon RI pathway0.43
Immune response BCR pathway0.43
2Complement Pathway
Immune response Classic complement pathway0.56
3Immune response NFAT in immune response
Immune response NFAT in immune response0.55
4Development Angiotensin activation of ERK
Signal transduction IP3 signaling0.43
5Development IGF 1 receptor signaling
Immune response IL 4 signaling pathway0.39

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways


Selected GeneGo (Thomson Reuters) Pathways for IGH (see all 7)
    Immune response IL-4 signaling pathway
Immune response Fc epsilon RI pathway
Immune response CD16 signaling in NK cells
Immune response Classical complement pathway
Immune response BCR pathway


    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for IGH
Interactions:

    Search GeneGlobe Interaction Network for IGH

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for IGH

4 Novoseek inferred chemical compound relationships for IGH gene    About this table
Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
ethidium bromide 19.2 1 11489470 (1)
polyacrylamide 18.9 2 16404354 (1), 10439376 (1)
oligonucleotide 9.28 3 1419624 (1), 10942239 (1), 9443038 (1)
agarose 1.19 1 11489470 (1)



Find genes that share compounds with IGH           About GenesLikeMe



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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miRNA
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Search for qRT-PCR Assays for microRNAs that regulate IGH
Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhib. RNA
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Predesigned siRNA for gene silencing in human, mouse, rat IGH
Clone
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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat IGH
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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IGH expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
IGH Expression
About this image


IGH expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 11) fully expand
 
 Bone (Muscoskeletal System)
         Bone Marrow
 
 Blood (Hematopoietic System)
         Plasmacytoid Dendritic cells Peripheral Blood
 
 Colon (Gastrointestinal Tract)
 
 Larynx (Respiratory System)
 
 Thyroid (Endocrine System)
IGH Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
    Custom PCR Arrays for IGH
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IGH

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for IGH gene from 1 species (see representative species )    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Igh-C5 immunoglobulin heavy chain constant region   --   12 -

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing IGH
DNA2.0 Custom Variant and Variant Library Synthesis for IGH

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 146910,147010,147070    OMIM disorders: --

18 diseases for IGH:    
About MalaCards
chromosome 13q deletion    malt lymphoma    mantle cell lymphoma    lymphoma, follicular, somatic
lymphoplasmacytic lymphoma    follicular lymphoma    plasmablastic lymphoma    histiocytic sarcoma
b-cell lymphomas    diffuse large b-cell lymphoma    leukemia, acute lymphoblastic 3    non-hodgkin lymphoma
chronic lymphocytic leukemia    acute leukemia    b-cell chronic lymphocytic leukemia    aplastic anemia
hodgkin's lymphoma    myeloma


Find genes that share disorders with IGH           About GenesLikeMe

Selected Novoseek inferred disease relationships for IGH gene (see all 39)    About this table

Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
lymphoma follicular 86.7 16 8619747 (3), 9276187 (2), 18055344 (2), 11245476 (1) (see all 11)
minimal residual disease 81.4 15 19324994 (3), 10485272 (1), 1909409 (1), 8315958 (1) (see all 9)
lymphoma b-cell 79.6 28 18000389 (4), 16101124 (4), 15191563 (3), 18070448 (2) (see all 13)
b-all 78.8 21 1909409 (4), 8315958 (4), 8161789 (3), 8630417 (2) (see all 8)
lymphoblastic leukemia acute 77.9 15 19324994 (3), 1850055 (1), 8187567 (1), 10485272 (1) (see all 13)
lymphoma 74.7 40 9276187 (2), 7856305 (2), 8619747 (2), 11245476 (1) (see all 29)
lymphoma non-hodgkins 73.9 14 12359763 (2), 18005388 (1), 8927349 (1), 9824206 (1) (see all 13)
t-all 69.3 19 10361104 (4), 8161789 (1), 16404354 (1), 10889907 (1) (see all 5)
lymphoblastic leukemia acute childhood 64.1 2 16404354 (1), 9836069 (1)
leukemia 63.9 13 16197448 (2), 10485272 (1), 16681637 (1), 9326200 (1) (see all 12)


Export disorders for IGH gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for IGH gene, integrated from 10 sources (see all 279):
(articles sorted by number of sources associating them with IGH)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Molecular cytogenetic analysis of chromosomal breakpoints in the IGH, MYC, BCL6, and MALT1 gene loci in primary cutaneous B-cell lymphomas. (PubMed id 15191563)1, 9 Hallermann C....Neumann C. (J. Invest. Dermatol. 2004)
  2. Characterization of genetic lesions in apoptosis-regulating and proliferation control genes in diffuse large B-cell non-Hodgkin's lymphoma. (PubMed id 20160358)1, 9 Pervez S....Siddiqui T. (J Cancer Res Ther 2009)
  3. Combined patterns of IGHV repertoire and cytogenetic/molecular alterations in monoclonal B lymphocytosis versus chronic lymphocytic leukemia. (PubMed id 23844084)1 Henriques A....Orfao A. (PLoS ONE 2013)
  4. Immunoarchitectural patterns in splenic marginal zone lymphoma: correlations with chromosomal aberrations, IGHV mutations, and survival. A study of 76 cases. (PubMed id 23611359)1 Traverse-Glehen A....Berger F. (Histopathology 2013)
  5. t(11;14)(q23;q32) involving IGH and DDX6 in nodal marginal zone lymphoma. (PubMed id 22965301)1 Stary S....Streubel B. (amp 2013)
  6. Contribution of V(H) replacement products to the generation of anti-HIV antibodies. (PubMed id 23220404)1 Liao H....Zhang Z. (Clin. Immunol. 2013)
  7. T(14;18)(q32;q21) involving MALT1 and IGH genes occurs in extranodal diffuse large B-cell lymphomas of the breast and testis. (PubMed id 23018871)1 Kuper-Hommel M.J....van Krieken J.H. (Mod. Pathol. 2013)
  8. High-affinity IgG antibodies develop naturally in Ig-knockout rats carrying germline human IgH/IgI_/IgI> loci bearing the rat CH region. (PubMed id 23303672)1 Osborn M.J....BrA1ggemann M. (J. Immunol. 2013)
  9. Limited detection of IgH gene rearrangements in plasma of patients with primary central nervous system lymphoma. (PubMed id 23828278)1 He J....Holdhoff M. (J. Neurooncol. 2013)
  10. IGHV gene mutational status and 17p deletion are independent molecular predictors in a comprehensive clinical-biological prognostic model for overall survival prediction in chronic lymphocytic leukemia. (PubMed id 22289136)1 Bulian P....Laurenti L. (J Transl Med 2012)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Disorders
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 3492 HGNC: 5477 euGenes: HUgn3492 ECgene: IGH H-InvDB: IGH

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for IGH Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for IGH gene:
Search GeneIP for patents involving IGH

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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