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IGFLR1 Gene

protein-coding   GIFtS: 43
GCID: GC19M037060

IGF-Like Family Receptor 1

(Previous names: U2(RNU2) small nuclear RNA auxiliary factor 1-like 4, transmembrane...)
(Previous symbols: U2AF1L4, TMEM149)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
IGF-Like Family Receptor 11 2
TMEM1491 2 3 5
Transmembrane Protein 1491 2 3
U2AF1L41 2 3
U2(RNU2) Small Nuclear RNA Auxiliary Factor 1-Like 41 2
U2 Small Nuclear RNA Auxiliary Factor 1-Like 42 3

External Ids:    HGNC: 236201   Entrez Gene: 797132   Ensembl: ENSG000001262467   OMIM: 6141435   UniProtKB: Q9H6653   
ORGUL members:         

Export aliases for IGFLR1 gene to outside databases

Previous GC identifers: GC19M036231 GC19M036361 GC19M036542


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for IGFLR1 Gene:
IGFLR1 (IGF-like family receptor 1) is a protein-coding gene.

UniProtKB/Swiss-Prot: IGFR1_HUMAN, Q9H665
Function: Probable cell membrane receptor for the IGF-like family proteins. Binds IGFL1 and IGFL3 with a higher
affinity. May also bind IGFL2




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000019.9  NC_018930.2  NT_011109.17  
Regulatory elements:
   Search for regulatory transcription factor binding sites for IGFLR1
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): IGFLR1 promoter sequence
   Search Chromatin IP Primers for IGFLR1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat IGFLR1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.12   Ensembl cytogenetic band:  19q13.12   HGNC cytogenetic band: 19q13.12

IGFLR1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
IGFLR1 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M037060:  view genomic region     (about GC identifiers)

Start:
36,230,058 bp from pter      End:
36,233,354 bp from pter
Size:
3,297 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: IGFR1_HUMAN, Q9H665 (See protein sequence)
Recommended Name: IGF-like family receptor 1 precursor  
Size: 355 amino acids; 37895 Da
Secondary accessions: Q8N5X0
Alternative splicing: 2 isoforms:  Q9H665-1   Q9H665-2   

Explore the universe of human proteins at neXtProt for IGFLR1: NX_Q9H665

Explore proteomics data for IGFLR1 at MOPED


See IGFLR1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_078936.1  
ENSEMBL proteins: 
 ENSP00000467750   ENSP00000465962   ENSP00000246532   ENSP00000466181   ENSP00000468545  
 ENSP00000476009   ENSP00000474913   ENSP00000468644   ENSP00000467842   ENSP00000340719  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR011029 DEATH-like_dom

Graphical View of Domain Structure for InterPro Entry Q9H665

ProtoNet protein and cluster: Q9H665


Find genes that share domains with IGFLR1           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: IGFR1_HUMAN, Q9H665
Function: Probable cell membrane receptor for the IGF-like family proteins. Binds IGFL1 and IGFL3 with a higher
affinity. May also bind IGFL2
Induction: Up-regulated by the proinflammatory cytokine TNFA and in skin upon tissue inflammation

     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding IPI--
     
Find genes that share ontologies with IGFLR1           About GenesLikeMe


Phenotypes:
     1 MGI phenotypic allele for Igflr1 (no phenotypes)

Find genes that share phenotypes with IGFLR1           About GenesLikeMe

Animal Models:
     MGI mouse knock-out Igflr1tm1Lex for IGFLR1

   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for IGFLR1
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miRNA
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miRTarBase miRNAs that target IGFLR1:
hsa-mir-26b-5p (MIRT030028)

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Search for qRT-PCR Assays for microRNAs that regulate IGFLR1
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Inhib. RNA
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Predesigned siRNA for gene silencing in human, mouse, rat IGFLR1

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
IGFR1_HUMAN, Q9H665: Cell membrane; Single-pass type I membrane protein

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005886plasma membrane IDA--
GO:0016021integral component of membrane IEA--

Find genes that share ontologies with IGFLR1           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for IGFLR1
Interactions:

    Search GeneGlobe Interaction Network for IGFLR1

STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

3 Interacting proteins for IGFLR1 (Q9H6651 ENSP000002465324) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
IGFL1Q6UW321, ENSP000004158234EBI-3870439,EBI-3870426 STRING: ENSP00000415823
IGFL2ENSP000003952194STRING: ENSP00000395219
IGFL3ENSP000003448604STRING: ENSP00000344860
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for IGFLR1 (IGFR1)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for IGFLR1 gene: 
NM_024660.2  

Unigene Cluster for IGFLR1:

IGF-like family receptor 1
Hs.352548  [show with all ESTs]
Unigene Representative Sequence: AK026226
12 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000592889 ENST00000588992 ENST00000246532(uc002obc.3 uc010xsy.2 uc002obd.4 uc010eej.3)
ENST00000592537 ENST00000588018 ENST00000591748 ENST00000592693 ENST00000587101
ENST00000591277 ENST00000589175 ENST00000586140 ENST00000344990(uc002obb.3)

miRNA
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Inhib. RNA
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Predesigned siRNA for gene silencing in human, mouse, rat IGFLR1
Clone
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Primer
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OriGene qPCR primer pairs and template standards for IGFLR1
OriGene qSTAR qPCR primer pairs in human, mouse for IGFLR1
Pre-validated RT2 qPCR Primer Assay in human, mouse, rat IGFLR1
  QuantiTect SYBR Green Assays in human, mouse, rat IGFLR1
  QuantiFast Probe-based Assays in human, mouse, rat IGFLR1

Additional mRNA sequence: 

AK026226.1 BC031329.1 BC126481.1 BC126483.1 BC144205.1 

11 DOTS entries:

DT.422019  DT.100752190  DT.100752191  DT.444864  DT.92441204  DT.92441214  DT.75136776  DT.75162308 
DT.100752189  DT.121488778  DT.121488807 

Selected AceView cDNA sequences (see all 175):

BQ882427 NM_024660 BU628789 CA748721 AI597639 AI498787 AI719948 AI925610 
CD742777 AI311085 CD742768 BE549868 BC049208 BI838452 AK026226 BM695629 
BU735432 AI921582 AW672936 BU608847 BX337984 BU542243 AI205252 BU621457 

GeneLoc Exon Structure

Selected Alternative Splicing Database (ASD) splice patterns (SP) for IGFLR1 (see all 12)    About this scheme

ExUns: 1 ^ 2a · 2b · 2c · 2d · 2e · 2f · 2g ^ 3a · 3b · 3c · 3d ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c · 6d
SP1:        -     -                       -     -     -                                                               
SP2:        -     -                       -     -     -     -     -     -     -     -                                 
SP3:        -     -                       -     -     -                                                               
SP4:                                      -     -     -                                                               
SP5:                                            -     -     -     -     -                                             


ECgene alternative splicing isoforms for IGFLR1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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IGFLR1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GCACTACTCG
IGFLR1 Expression
About this image


IGFLR1 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 
 Blood (Hematopoietic System)
         Plasmacytoid Dendritic cells Peripheral Blood
IGFLR1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

IGFLR1 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.352548
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IGFLR1

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for IGFLR1 gene from Selected species (see all 7)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Igflr11 , 5 transmembrane protein 1495
IGF-like family receptor 11
67.4(n)1
60.82(a)1
  7 (18.62 cM)5
1018831  NM_145580.21  NP_663555.21 
 305654275 
zebrafish
(Danio rerio)
Actinopterygii LOC7938251 IGF-like family receptor 1-like 41.69(n)
33.11(a)
  793825  XM_001333625.3  XP_001333661.1 


ENSEMBL Gene Tree for IGFLR1 (if available)
TreeFam Gene Tree for IGFLR1 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for IGFLR1 gene

Find genes that share paralogs with IGFLR1           About GenesLikeMe


1 Pseudogenes.org Pseudogene for IGFLR1
PGOHUM00000247831


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for IGFLR1 (see all 126)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 19 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1407979691,2
C--36230378(+) AGGCAG/TCCCAT 2 M L mis11Minor allele frequency- T:0.00NA 4492
rs2000994381,2
C--36230401(+) GGTGTC/TGAGTA 2 Q R mis10--------
rs1472955741,2
C,F--36230423(+) CATACC/ACCCAC 2 /G /C mis12Minor allele frequency- A:0.00NA EU 5387
rs1383979921,2
C,F--36230444(+) CTCAGG/CGTCCA 2 /P /A mis12Minor allele frequency- C:0.00NA EU 5555
rs1434284221,2
F--36230480(+) CTCCAG/TCTCAT 2 M L mis11Minor allele frequency- T:0.00NA 4466
rs2004874961,2
--36230500(+) GAGACA/TGGGGT 2 Q L mis10--------
rs2000224751,2
C--36230527(+) ACAGTA/TCTGGA 2 E V mis10--------
rs1472055131,2
C,F--36230675(+) CCTGGG/AGAGGA 2 /S syn11Minor allele frequency- A:0.00NA 3748
rs1404994751,2
C,F--36230677(+) TGGGGA/GGGACA 2 P S mis12Minor allele frequency- G:0.00NA EU 5097
rs1917517351,2
C--36230687(+) AGATGC/G/TGAGGA 3 S syn10--------

HapMap Linkage Disequilibrium report for IGFLR1 (36230058 - 36233354 bp)

Structural Variations
     Database of Genomic Variants (DGV) 3 variations for IGFLR1:    About this table    
Variant IDTypeSubtypePubMed ID
dgv3853n71CNV Loss21882294
dgv3852n71CNV Loss21882294
nsv515536CNV Loss19592680

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing IGFLR1
DNA2.0 Custom Variant and Variant Library Synthesis for IGFLR1

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 614143    OMIM disorders: --


Find genes that share disorders with IGFLR1           About GenesLikeMe


Export disorders for IGFLR1 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for IGFLR1 gene integrated from 10 sources:
(articles sorted by number of sources associating them with IGFLR1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Murine IGFL and human IGFL1 are induced in inflammatory skin conditions and bind to a novel TNF receptor family member, IGFLR1. (PubMed id 21454693)1, 2, 3 Lobito A.A.... Gonzalez L.C. (J. Biol. Chem. 2011)
  2. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
  3. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (Nature 2004)
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
  6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 79713 HGNC: 23620 AceView: FLJ22573andU2AF1L3 Ensembl:ENSG00000126246 euGenes: HUgn79713
ECgene: IGFLR1 H-InvDB: IGFLR1

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for IGFLR1 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for IGFLR1 gene:
Search GeneIP for patents involving IGFLR1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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