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Aliases for IGFL3 Gene

Aliases for IGFL3 Gene

  • IGF-Like Family Member 3 2 3
  • Insulin Growth Factor-Like Family Member 3 3
  • RPRC483 3
  • UNQ483 3

External Ids for IGFL3 Gene

Summaries for IGFL3 Gene

Entrez Gene Summary for IGFL3 Gene

  • IGFL3 belongs to the insulin-like growth factor (IGF; see MIM 147440) family of signaling molecules that play critical roles in cellular energy metabolism and in growth and development, especially prenatal growth (Emtage et al., 2006 [PubMed 16890402]).[supplied by OMIM, Mar 2008]

GeneCards Summary for IGFL3 Gene

IGFL3 (IGF-Like Family Member 3) is a Protein Coding gene. Diseases associated with IGFL3 include skin conditions and testicular disease. An important paralog of this gene is IGFL2.

UniProtKB/Swiss-Prot for IGFL3 Gene

  • Potential ligand of the IGFLR1 cell membrane receptor.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGFL3 Gene

Genomics for IGFL3 Gene

Genomic Location for IGFL3 Gene

Start:
46,120,071 bp from pter
End:
46,124,674 bp from pter
Size:
4,604 bases
Orientation:
Minus strand

Genomic View for IGFL3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for IGFL3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGFL3 Gene

Regulatory Elements for IGFL3 Gene

Proteins for IGFL3 Gene

  • Protein details for IGFL3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6UXB1-IGFL3_HUMAN
    Recommended name:
    Insulin growth factor-like family member 3
    Protein Accession:
    Q6UXB1
    Secondary Accessions:

    Protein attributes for IGFL3 Gene

    Size:
    125 amino acids
    Molecular mass:
    14198 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IGFL3 Gene

Proteomics data for IGFL3 Gene at MOPED

Post-translational modifications for IGFL3 Gene

No Post-translational modifications

Other Protein References for IGFL3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for IGFL3 Gene

Domains for IGFL3 Gene

Protein Domains for IGFL3 Gene

ProtoNet:

UniProtKB/Swiss-Prot:

IGFL3_HUMAN
Family:
  • Belongs to the IGFL family.:
    • Q6UXB1
genes like me logo Genes that share domains with IGFL3: view

No data available for Gene Families for IGFL3 Gene

Function for IGFL3 Gene

Molecular function for IGFL3 Gene

UniProtKB/Swiss-Prot Function: Potential ligand of the IGFLR1 cell membrane receptor.

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for IGFL3 Gene

Localization for IGFL3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for IGFL3 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for IGFL3 Gene COMPARTMENTS Subcellular localization image for IGFL3 gene
Compartment Confidence
extracellular 4

Gene Ontology (GO) - Cellular Components for IGFL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with IGFL3: view

Pathways for IGFL3 Gene

SuperPathways for IGFL3 Gene

No Data Available

Interacting Proteins for IGFL3 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000344860%0d%0a9606.ENSP00000246532%0d%0a
Selected Interacting proteins: ENSP00000344860 for IGFL3 Gene via STRING

Symbol External ID(s) Details
IGFLR1

Gene Ontology (GO) - Biological Process for IGFL3 Gene

None

No data available for Pathways by source for IGFL3 Gene

Compounds for IGFL3 Gene

(2) Novoseek inferred chemical compound relationships for IGFL3 Gene

Compound -log(P) Hits PubMed IDs
testosterone 70.9 10
phthalate 54.3 1
genes like me logo Genes that share compounds with IGFL3: view

Transcripts for IGFL3 Gene

mRNA/cDNA for IGFL3 Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IGFL3 Gene

IGF-like family member 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IGFL3 Gene

No ASD Table

Relevant External Links for IGFL3 Gene

GeneLoc Exon Structure for
IGFL3
ECgene alternative splicing isoforms for
IGFL3

Expression for IGFL3 Gene

mRNA expression in normal human tissues for IGFL3 Gene

mRNA differential expression in normal tissues according to GTEx for IGFL3 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (26.5) and Skin - Not Sun Exposed (Suprapubic) (25.1).

SOURCE GeneReport for Unigene cluster for IGFL3 Gene Hs.365496

mRNA Expression by UniProt/SwissProt for IGFL3 Gene

Q6UXB1-IGFL3_HUMAN
Tissue specificity: Detected in the cerebellum.
genes like me logo Genes that share expressions with IGFL3: view

Orthologs for IGFL3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for IGFL3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia IGFL3 36
  • 99.47 (n)
  • 99.2 (a)
IGFL3 37
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia IGFL3 36
  • 75.99 (n)
  • 67.8 (a)
IGFL3 37
  • 60 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Igfl3 36
  • 64.22 (n)
  • 47.71 (a)
Igfl3 16
Igfl3 37
  • 37 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia LOC100362729 36
  • 66.67 (n)
  • 53.77 (a)
Species with no ortholog for IGFL3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IGFL3 Gene

ENSEMBL:
Gene Tree for IGFL3 (if available)
TreeFam:
Gene Tree for IGFL3 (if available)

Paralogs for IGFL3 Gene

Paralogs for IGFL3 Gene

Selected SIMAP similar genes for IGFL3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with IGFL3: view

Variants for IGFL3 Gene

Sequence variations from dbSNP and Humsavar for IGFL3 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs2098470 -- 46,120,751(+) attgc(A/G)tagca intron-variant
rs2287307 -- 46,124,335(+) GAAAG(A/G)AAAAA intron-variant
rs4803898 -- 46,125,138(+) GGACC(C/G)TTTAT upstream-variant-2KB
rs7359969 -- 46,125,856(+) TAAAA(C/T)ACAAA upstream-variant-2KB
rs7359973 -- 46,126,084(+) AAAGA(C/T)ACACT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for IGFL3 Gene

Variant ID Type Subtype PubMed ID
nsv912176 CNV Gain 21882294
nsv528826 CNV Gain 19592680
nsv828567 CNV Loss 20364138
esv28290 CNV Loss 19812545
esv2664945 CNV Deletion 23128226
nsv498902 CNV Loss 21111241
esv2718646 CNV Deletion 23290073
dgv591n67 CNV Loss 20364138

Relevant External Links for IGFL3 Gene

HapMap Linkage Disequilibrium report
IGFL3

Disorders for IGFL3 Gene

(5) Novoseek inferred disease relationships for IGFL3 Gene

Disease -log(P) Hits PubMed IDs
testicular dysgenesis 92.8 1
cryptorchidism 88.7 5
klinefelters syndrome 76 2
testicular diseases 74.5 2
hyperandrogenism 46 1
genes like me logo Genes that share disorders with IGFL3: view

No data available for UniProtKB/Swiss-Prot for IGFL3 Gene

Publications for IGFL3 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3
  3. Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PMID: 15340161) Zhang Z. … Henzel W.J. (Protein Sci. 2004) 3 4
  4. IGFL: a secreted family with conserved cysteine residues and similarities to the IGF superfamily. (PMID: 16890402) Emtage P. … Tang Y.T. (Genomics 2006) 3 4
  5. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4

Products for IGFL3 Gene

Sources for IGFL3 Gene

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