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IGFL3 Gene

protein-coding   GIFtS: 40
GCID: GC19M046627

IGF-Like Family Member 3

  See IGFL3-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
IGF-Like Family Member 31 2
RPRC4832
UNQ4832
Insulin Growth Factor-Like Family Member 32

External Ids:    HGNC: 329301   Entrez Gene: 3885552   Ensembl: ENSG000001886247   OMIM: 6105465   UniProtKB: Q6UXB13   

Export aliases for IGFL3 gene to outside databases

Previous GC identifers: GC19M051318 GC19M043050


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for IGFL3 Gene:
IGFL3 belongs to the insulin-like growth factor (IGF; see MIM 147440) family of signaling molecules that play
critical roles in cellular energy metabolism and in growth and development, especially prenatal growth (Emtage et
al., 2006 (PubMed 16890402)).(supplied by OMIM, Mar 2008)

GeneCards Summary for IGFL3 Gene:
IGFL3 (IGF-like family member 3) is a protein-coding gene. Diseases associated with IGFL3 include testicular disease, and type 2 diabetes mellitus. An important paralog of this gene is IGFL2.

UniProtKB/Swiss-Prot: IGFL3_HUMAN, Q6UXB1
Function: Potential ligand of the IGFLR1 cell membrane receptor




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000019.9  NC_018930.2  NT_011109.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the IGFL3 gene promoter:
         HOXA9   HOXA9B   STAT5B   Max1   USF1   STAT3   Meis-1a   c-Myc   Meis-1   RSRFC4   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidIGFL3 promoter sequence
   Search Chromatin IP Primers for IGFL3

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat IGFL3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.32   Ensembl cytogenetic band:  19q13.32   HGNC cytogenetic band: 19q13.32

IGFL3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
IGFL3 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M046627:  view genomic region     (about GC identifiers)

Start:
46,623,328 bp from pter      End:
46,627,931 bp from pter
Size:
4,604 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
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UniProtKB/Swiss-Prot: IGFL3_HUMAN, Q6UXB1 (See protein sequence)
Recommended Name: Insulin growth factor-like family member 3 precursor  
Size: 125 amino acids; 14198 Da

Explore the universe of human proteins at neXtProt for IGFL3: NX_Q6UXB1

Explore proteomics data for IGFL3 at MOPED


See IGFL3 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_997276.1  
ENSEMBL proteins: 
 ENSP00000344860  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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ProtoNet protein and cluster: Q6UXB1

UniProtKB/Swiss-Prot: IGFL3_HUMAN, Q6UXB1
Similarity: Belongs to the IGFL family


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: IGFL3_HUMAN, Q6UXB1
Function: Potential ligand of the IGFLR1 cell membrane receptor

Phenotypes:
     1 MGI phenotypic allele for Igfl3 (no phenotypes)


Find genes that share phenotypes with IGFL3           About GenesLikeMe

Animal Models:
     MGI mouse knock-out Igfl3tm1Lex for IGFL3

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
IGFL3_HUMAN, Q6UXB1: Secreted (Probable)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
extracellular4

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005576extracellular region IEA--

Find genes that share ontologies with IGFL3           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for IGFL3
Interactions:

    Search GeneGlobe Interaction Network for IGFL3

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for IGFL3 (ENSP000003448604) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
IGFLR1ENSP000002465324STRING: ENSP00000246532
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for IGFL3

2 Novoseek inferred chemical compound relationships for IGFL3 gene    About this table
Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
testosterone 70.9 13 12534932 (1), 18436703 (1), 18062862 (1), 17049842 (1) (see all 10)
phthalate 54.3 1 17258888 (1)



Find genes that share compounds with IGFL3           About GenesLikeMe



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for IGFL3 gene: 
NM_207393.1  

Unigene Cluster for IGFL3:

IGF-like family member 3
Hs.365496  [show with all ESTs]
Unigene Representative Sequence: BX090433
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000341415(uc002pea.1)
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Additional mRNA sequence: 

AY358434.1 AY672113.1 BC130593.1 BC130597.1 

1 DOTS entry:

DT.404694 

11 AceView cDNA sequences:

BX090433 AA025266 BE122850 NM_207393 BU624416 AY358434 AA024389 AY672113 
BU628572 BQ771506 AW016901 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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IGFL3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: AGGCCACGAT
IGFL3 Expression
About this image

IGFL3 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

IGFL3 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.365496

UniProtKB/Swiss-Prot: IGFL3_HUMAN, Q6UXB1
Tissue specificity: Detected in the cerebellum

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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for IGFL3 gene from Selected species (see all 4)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Igfl31 , 5 IGF-like family member 31, 5 64.22(n)1
47.71(a)1
  7 (9.15 cM)5
2329251  NM_001003393.11  NP_001003393.11 
 181764945 


ENSEMBL Gene Tree for IGFL3 (if available)
TreeFam Gene Tree for IGFL3 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for IGFL3 gene
IGFL22  IGFL12  IGFL42  
3 SIMAP similar genes for IGFL3 using alignment to 1 protein entry:     IGFL3_HUMAN:
IGFL2    IGFL4    IGFL1

Find genes that share paralogs with IGFL3           About GenesLikeMe



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for IGFL3 (see all 156)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 19 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1444146001,2
--46622963(+) AATTGG/TGATAA 1 -- ds50010--------
rs1826467831,2
--46623076(+) TTGCCA/GGCAAG 1 -- ds50010--------
rs1511886791,2
--46623097(+) AGCCCA/GGGTAG 1 -- ds50010--------
rs2008954521,2
C--46623351(+) TTTTA-/TTTGCC 1 -- ut310--------
rs1878370181,2
--46623504(+) CTCTCC/TGAAGT 1 -- ut310--------
rs790874941,2
C,F--46623540(+) TGCTTG/CGTCTC 1 -- ut311Minor allele frequency- C:0.50NA 4
rs2009021971,2
--46623547(+) TCTCTC/TCTCCC 1 -- ut310--------
rs1999137881,2
--46623562(+) TCTGCC/TGTCTG 1 -- ut310--------
rs2022199301,2
--46623581(+) GCCTGC/GGGTTT 1 -- ut310--------
rs1931784911,2
C--46623588(+) GTTTTA/TATGGG 2 * L --0--------

HapMap Linkage Disequilibrium report for IGFL3 (46623328 - 46627931 bp)

Structural Variations
     Database of Genomic Variants (DGV) 8 variations for IGFL3:    About this table    
Variant IDTypeSubtypePubMed ID
esv2664945CNV Deletion23128226
esv2718646CNV Deletion23290073
dgv591n67CNV Loss20364138
nsv498902CNV Loss21111241
nsv828567CNV Loss20364138
esv28290CNV Loss19812545
nsv528826CNV Gain19592680
nsv912176CNV Gain21882294

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 610546    OMIM disorders: --

2 diseases for IGFL3:    
About MalaCards
testicular disease    type 2 diabetes mellitus


Find genes that share disorders with IGFL3           About GenesLikeMe

5 Novoseek inferred disease relationships for IGFL3 gene    About this table

Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
testicular dysgenesis 92.8 1 16687567 (1)
cryptorchidism 88.7 5 17028442 (1), 18436703 (1), 17437853 (1), 18062862 (1) (see all 5)
klinefelters syndrome 76 2 18436703 (1), 16926256 (1)
testicular diseases 74.5 2 15755855 (2)
hyperandrogenism 46 1 17356050 (1)


Export disorders for IGFL3 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for IGFL3 gene, integrated from 10 sources (see all 51):
(articles sorted by number of sources associating them with IGFL3)
    Utopia: connect your pdf to the dynamic
world of online information

  1. IGFL: a secreted family with conserved cysteine residues and similarities to the IGF superfamily. (PubMed id 16890402)1, 2 Emtage P.... Tang Y.T. (Genomics 2006)
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 3 Ota T.... Sugano S. (Nat. Genet. 2004)
  3. Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)1, 2 Zhang Z. and Henzel W.J. (Protein Sci. 2004)
  4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (Genome Res. 2003)
  5. Murine IGFL and human IGFL1 are induced in inflammatory skin conditions and bind to a novel TNF receptor family member, IGFLR1. (PubMed id 21454693)2 Lobito A.A.... Gonzalez L.C. (J. Biol. Chem. 2011)
  6. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (Nature 2004)
  7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  8. Novel mutations involving the INSL3 gene associated with cryptorchidism. (PubMed id 17437853)9 El Houate B....McElreavey K. (J. Urol. 2007)
  9. Biology of insulin-like factor 3 in human reproduction. (PubMed id 19329805)9 Ivell R. and Anand-Ivell R. (Hum. Reprod. Update 2009)
  10. Insulin-like factor 3 as a marker of testicular function in obese men. (PubMed id 19226271)9 Foresta C....Ferlin A. (Clin. Endocrinol. (Oxf) 2009)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Disorders
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 388555 HGNC: 32930 AceView: IGFL3 Ensembl:ENSG00000188624 euGenes: HUgn388555
ECgene: IGFL3 H-InvDB: IGFL3

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for IGFL3 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for IGFL3 gene:
Search GeneIP for patents involving IGFL3

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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