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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

IGFBPL1 Gene

protein-coding   GIFtS: 44
GCID: GC09M038396

insulin-like growth factor binding protein-like 1

 Explore 2 diseases affiliated with
IGFBPL1 via our new
 Human Malady Compendium 
Biological research products
for IGFBPL1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Insulin-Like Growth Factor Binding Protein-Like 11 2     IGFBP-RP42
BA113O24.11     Insulin-Like Growth Factor Binding Protein Related Protein 42
Insulin-Like Growth Factor-Binding-Related Protein 42 3     Insulin-Like Growth Factor-Binding Protein-Like 12
IGFBPRP42 3     IGFBP-RP42
IGFBP-Related Protein 102 3     

External Ids:    HGNC: 200811   Entrez Gene: 3472522   Ensembl: ENSG000001371427   OMIM: 6104135   UniProtKB: Q8WX773   

Export aliases for IGFBPL1 gene to outside databases

Previous GC identifer: GC09M038399


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: IBPL1_HUMAN, Q8WX77
Function: IGF-binding proteins prolong the half-life of IGFs and have been shown to either inhibit or stimulate the
growth promoting effects of the IGFs in cell culture. They alter the interaction of IGFs with their cell surface
receptors (By similarity). May be a putative tumor suppressor protein




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000009.11  NC_018920.1  NT_008413.18  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the IGFBPL1 gene promoter:
         SRF   AhR   Egr-2   Nkx6-1   SRF (504 AA)   FOXJ2 (long isoform)   FOXJ2   Arnt   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidIGFBPL1 promoter sequence
   Search SABiosciences Chromatin IP Primers for IGFBPL1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IGFBPL1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9p13.1   Ensembl cytogenetic band:  9p13.1   HGNC cytogenetic band: 9p12

IGFBPL1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
IGFBPL1 gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09M038396:  view genomic region     (about GC identifiers)

Start:
38,408,991 bp from pter      End:
38,424,444 bp from pter
Size:
15,454 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: IBPL1_HUMAN, Q8WX77 (See protein sequence)
Recommended Name: Insulin-like growth factor-binding protein-like 1 precursor  
Size: 278 amino acids; 29005 Da
Subcellular location: Secreted

Explore the universe of human proteins at neXtProt for IGFBPL1: NX_Q8WX77

IGFBPL1 Protein expression data from MOPED and PaxDb:    About this image 

Estimated protein expression log10 (pmol).

REFSEQ proteins: NP_001007564.1  
ENSEMBL proteins: 
 ENSP00000366923  

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005576extracellular region IEA--


IGFBPL1 for ontologies           About GeneDecksing



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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

IGFBPL1 for domains           About GeneDecksing

5/7 InterPro domains/families (see all 7):
 IPR003598 Ig_sub2
 IPR002350 Prot_inh_Kazal
 IPR013098 Ig_I-set
 IPR013783 Ig-like_fold
 IPR011390 IGFBP_rP_mac25

Graphical View of Domain Structure for InterPro Entry Q8WX77

ProtoNet protein and cluster: Q8WX77

2 Blocks protein families:
IPB003598 Immunoglobulin C-2 type
IPB013098 Immunoglobulin I-set


UniProtKB/Swiss-Prot: IBPL1_HUMAN, Q8WX77
Similarity: Contains 1 Ig-like C2-type (immunoglobulin-like) domain
Similarity: Contains 1 IGFBP N-terminal domain
Similarity: Contains 1 Kazal-like domain


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

     UniProtKB/Swiss-Prot: IBPL1_HUMAN, Q8WX77
Function: IGF-binding proteins prolong the half-life of IGFs and have been shown to either inhibit or stimulate the
growth promoting effects of the IGFs in cell culture. They alter the interaction of IGFs with their cell surface
receptors (By similarity). May be a putative tumor suppressor protein
Induction: Down-regulated in multiple tumors

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Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005520insulin-like growth factor binding IEA--


IGFBPL1 for ontologies           About GeneDecksing



(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for IGFBPL1

Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0001558regulation of cell growth IEA--


IGFBPL1 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
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Browse Tocris compounds for IGFBPL1
Search CenterWatch for drugs/clinical trials and news about IGFBPL1 / IBPL1 

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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About This Section

REFSEQ mRNAs for IGFBPL1 gene: 
NM_001007563.2  

Unigene Cluster for IGFBPL1:

Insulin-like growth factor binding protein-like 1
Hs.349705  [show with all ESTs]
Unigene Representative Sequence: AK131521
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000377694(uc004aba.3)

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SwitchGear 3'UTR luciferase reporter plasmidIGFBPL1 3' UTR sequence
Inhib. RNA
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Clone
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Additional cDNA sequence: 

AK055716.1 AK131521.1 

2 DOTS entries:

DT.102823294  DT.95153867 

24/65 AceView cDNA sequences (see all 65):

AI424991 AA676754 AW089149 BE857533 CR595424 AI863108 AA598689 BQ899312 
CR607939 Z41952 Z38240 AA620528 AI364268 BU956478 BX396150 BQ425046 
BU680001 BE263253 BM674526 BM716864 AW090733 BX371609 BM701473 BQ681660 

GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for IGFBPL1    About this scheme

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b
SP1:              -     -                                 
SP2:                                      -               
SP3:                                                      


ECgene alternative splicing isoforms for IGFBPL1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

IGFBPL1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: ATGTCACGAC

Microarray
RNAseq (Illumina Body Map)
(100×FPKM)½
SAGE (Serial Analysis of Gene Expression)

About this image

IGFBPL1 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
5 LifeMap In Vivo Development Anatomical Compartments/Cells 
Tissue Anatomical Compartment CellCategory (developmental path)
BrainBlood Brain BarrierEndothelial CellsBlood Brain Barrier, Endothelium
PancreasDorsal Pancreatic BudImmature Beta Progenitor CellsPancreas
PancreasVentral Pancreatic BudImmature Beta Progenitor CellsPancreas
AdiposeVisceral White AdiposeAdipose
Head MesenchymeFrontonasal ProcessHead Mesenchyme
Expression: Positive    Negative     Selective marker
Experimental details: Curated     Microarrays     In-situ hybridization
Stem Cell Differentiation: 1 LifeMap Cell 
NameCategory
Definitive endoderm-like cells (A scalable, suspensi...)

See IGFBPL1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for IGFBPL1

SOURCE GeneReport for Unigene cluster: Hs.349705

UniProtKB/Swiss-Prot: IBPL1_HUMAN, Q8WX77
Tissue specificity: Expressed at the highest level in both brain and testis, with lower levels in the prostate, bladder
and lung

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In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for IGFBPL1 gene from 1/11 species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
lizard
(Anolis carolinensis)
Reptilia IGFBPL16
--
57(a)
1 ↔ 1
GL343201.1(3959804-4016112)


ENSEMBL Gene Tree for IGFBPL1 (if available)
TreeFam Gene Tree for IGFBPL1 (if available) 

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for IGFBPL1 gene
KAZALD12  IGFBP72  
2 SIMAP similar genes for IGFBPL1 using alignment to 1 protein entry:     IBPL1_HUMAN:
IGFBP7    KAZALD1

IGFBPL1 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/380 NCBI SNPs in IGFBPL1 are shown (see all 380    About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 9 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs48788111,2
C,F,H,--38408525(+) CCCACC/ATAAAA 1 -- ds500114Minor allele frequency- A:0.05NS EA NA 2094
rs20385891,2
C,F,O,A,H,--38408592(+) ACACGC/TTGGGG 1 -- ds500130Minor allele frequency- T:0.30NS EA NA WA CSA 2677
rs78535571,2
C,F,A,H,--38408688(+) TCTTAC/ATCTAG 1 -- ds500125Minor allele frequency- A:0.30NS EA NA WA CSA 2354
rs78692271,2
C,F,A,H,--38408783(+) AGGGAC/TCTGTT 1 -- ds500114Minor allele frequency- T:0.30NA WA CSA EA 380
rs1838809731,2
--38408789(+) CTGTTC/GAGGTC 1 -- ds50010--------
rs1881128491,2
--38408883(+) TAATAC/GGTCAT 1 -- ds50010--------
rs169351471,2
C,F,H,--38408920(+) TGACAC/TGAGCC 1 -- ds500119Minor allele frequency- T:0.06NA NS EA CSA 2112
rs78542551,2
C,F,A,H,--38408948(+) ATGCCA/GTTCTG 1 -- ds500134Minor allele frequency- G:0.30NA NS EA WA CSA 2924
rs78539441,2
C,F,A,H,--38408972(+) AGAGAG/ATAATT 1 -- ds500129Minor allele frequency- A:0.30NA NS EA WA CSA 2492
rs78570131,2
C,F,A,H,--38409037(+) CAAATC/ACGTTT 1 -- ut31 ese331Minor allele frequency- A:0.26NA NS EA WA 3332

HapMap Linkage Disequilibrium report for IGFBPL1 (38408991 - 38424444 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 2 variations for IGFBPL1
     2 CNVs: 33092 47939

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

IGFBPL1 for disorders           About GeneDecksing

OMIM gene information: 610413    OMIM disorders: --

2 diseases for IGFBPL1:    About MalaCards
breast cancer    prostatitis


Export disorders for IGFBPL1 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for IGFBPL1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with IGFBPL1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Identification of a novel insulin-like growth factor binding protein gene homologue with tumor suppressor like properties. (PubMed id 15845387)1, 2 Cai Z.... Dedera D.A. (2005)
  2. Epigenetic inactivation implies independent functions for insulin-like growth factor binding protein (IGFBP)-related protein 1 and the related IGFBPL1 in inhibiting breast cancer phenotypes. (PubMed id 17634530)1 Smith P....Crook T. (2007)
  3. Involvement of insulin-like growth factor-binding protein-related protein 1 in decidualization of human endometrial stromal cells. (PubMed id 17884839)1 Kutsukake M....Tamura K. (2007)
  4. DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)2 Humphray S.J.... Dunham I. (2004)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 347252 HGNC: 20081 AceView: IGFBPL1 Ensembl:ENSG00000137142 euGenes: HUgn347252
ECgene: IGFBPL1 H-InvDB: IGFBPL1

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for IGFBPL1 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for IGFBPL1 gene:
Search GeneIP for patents involving IGFBPL1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section

 
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 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat IGFBPL1
       
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