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Aliases for IGFBP7-AS1 Gene

Subcategory (RNA class) for IGFBP7-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IGFBP7-AS1 Gene

  • IGFBP7 Antisense RNA 1 2 3 5

External Ids for IGFBP7-AS1 Gene

Previous GeneCards Identifiers for IGFBP7-AS1 Gene

  • GC04P057977

Summaries for IGFBP7-AS1 Gene

GeneCards Summary for IGFBP7-AS1 Gene

IGFBP7-AS1 (IGFBP7 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGFBP7-AS1 Gene

Genomics for IGFBP7-AS1 Gene

Regulatory Elements for IGFBP7-AS1 Gene

Enhancers for IGFBP7-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G057073 1.7 FANTOM5 Ensembl ENCODE dbSUPER 18.4 -30.7 -30675 10.9 PKNOX1 SIN3A FEZF1 ZNF2 ZNF121 GATA2 FOS ZNF263 TSHZ1 ZNF518A IGFBP7 IGFBP7-AS1 RNU6-998P UBE2CP3
GH04G057118 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.2 +9.5 9504 2.2 TBP MAX BRCA1 RAD21 POLR2A FOS NFE2L2 TCF7L2 ELK4 STAT1 IGFBP7-AS1 IGFBP7 GC04P057130
GH04G057070 0.9 Ensembl ENCODE dbSUPER 16.8 -38.6 -38584 1.4 PRDM6 CEBPB IGFBP7 IGFBP7-AS1 RNU6-998P UBE2CP3
GH04G057163 1.2 Ensembl ENCODE 11.8 +54.2 54198 1.6 ELF3 ATF1 RB1 CREB3L1 ZNF2 ZNF48 RAD21 ZEB1 CBX5 ZNF366 IGFBP7 IGFBP7-AS1 RNU6-998P ENSG00000250192 GC04P057230
GH04G057101 1.3 Ensembl ENCODE dbSUPER 9.5 -6.3 -6271 4.7 FOXA2 ARID4B THRB RARA GATA2 FOS HMG20B NR2F2 KAT8 MAFF POLR2B NOA1 IGFBP7-AS1 IGFBP7 UBE2CP3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IGFBP7-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for IGFBP7-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000168735 -161 3600 LEF1 SUZ12 ZNF223 MAX SIN3A FEZF1 RBBP5 ZIC2 HIC1 ZFHX2

Genomic Location for IGFBP7-AS1 Gene

Chromosome:
4
Start:
57,109,762 bp from pter
End:
57,205,510 bp from pter
Size:
95,749 bases
Orientation:
Plus strand

Genomic View for IGFBP7-AS1 Gene

Genes around IGFBP7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGFBP7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGFBP7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGFBP7-AS1 Gene

Proteins for IGFBP7-AS1 Gene

Post-translational modifications for IGFBP7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IGFBP7-AS1 Gene

Domains & Families for IGFBP7-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGFBP7-AS1 Gene

Function for IGFBP7-AS1 Gene

Phenotypes for IGFBP7-AS1 Gene

GenomeRNAi human phenotypes for IGFBP7-AS1:
genes like me logo Genes that share phenotypes with IGFBP7-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGFBP7-AS1 Gene

Localization for IGFBP7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for IGFBP7-AS1 Gene

Pathways & Interactions for IGFBP7-AS1 Gene

SuperPathways for IGFBP7-AS1 Gene

No Data Available

Interacting Proteins for IGFBP7-AS1 Gene

Gene Ontology (GO) - Biological Process for IGFBP7-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IGFBP7-AS1 Gene

Drugs & Compounds for IGFBP7-AS1 Gene

No Compound Related Data Available

Transcripts for IGFBP7-AS1 Gene

mRNA/cDNA for IGFBP7-AS1 Gene

(12) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IGFBP7-AS1 Gene

No ASD Table

Relevant External Links for IGFBP7-AS1 Gene

GeneLoc Exon Structure for
IGFBP7-AS1
ECgene alternative splicing isoforms for
IGFBP7-AS1

Expression for IGFBP7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IGFBP7-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IGFBP7-AS1 Gene

This gene is overexpressed in Artery - Aorta (x8.1), Artery - Coronary (x6.3), and Artery - Tibial (x5.7).
genes like me logo Genes that share expression patterns with IGFBP7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGFBP7-AS1 Gene

Orthologs for IGFBP7-AS1 Gene

Evolution for IGFBP7-AS1 Gene

ENSEMBL:
Gene Tree for IGFBP7-AS1 (if available)
TreeFam:
Gene Tree for IGFBP7-AS1 (if available)

No data available for Orthologs for IGFBP7-AS1 Gene

Paralogs for IGFBP7-AS1 Gene

No data available for Paralogs for IGFBP7-AS1 Gene

Variants for IGFBP7-AS1 Gene

Sequence variations from dbSNP and Humsavar for IGFBP7-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000007100 -- 57,191,074(+) CTAGG(A/G)GGTGC intron-variant
rs1000014816 -- 57,192,071(+) AGCCT(C/G/T)TTGTC intron-variant
rs1000044755 -- 57,147,110(+) GGGCA(A/C)TGGAT intron-variant
rs1000070023 -- 57,114,100(+) GCCTG(C/T)CTATT intron-variant
rs1000080206 -- 57,185,916(+) TAGAG(C/T)GAGGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IGFBP7-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1001e214 CNV gain 21293372
dgv1484e212 CNV gain 25503493
dgv5215n100 CNV gain 25217958
dgv5216n100 CNV gain 25217958
dgv5217n100 CNV gain 25217958
dgv652n27 CNV gain 19166990
dgv9050n54 CNV gain 21841781
esv25139 CNV gain 19812545
esv2759253 CNV gain+loss 17122850
esv2763815 CNV gain 21179565
esv3600596 CNV loss 21293372
esv3600597 CNV loss 21293372
nsv10499 CNV loss 18304495
nsv517760 CNV gain+loss 19592680
nsv594207 CNV gain 21841781
nsv594208 CNV gain 21841781
nsv999337 CNV gain 25217958

Relevant External Links for IGFBP7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGFBP7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IGFBP7-AS1 Gene

Disorders for IGFBP7-AS1 Gene

Relevant External Links for IGFBP7-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IGFBP7-AS1

No disorders were found for IGFBP7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IGFBP7-AS1 Gene

Publications for IGFBP7-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for IGFBP7-AS1 Gene

Sources for IGFBP7-AS1 Gene

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